HHsearch alignment for GI: 254781091 and conserved domain: TIGR03402

>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=100.00  E-value=0  Score=634.45  Aligned_cols=368  Identities=38%  Similarity=0.621  Sum_probs=345.2

Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHH
Q ss_conf             012157888989899999999996-4288523658999999999999999999729897789886685387644556544
Q gi|254781091|r    5 VYLDWNATAPLLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHF   83 (383)
Q Consensus         5 iYlD~aattp~~~~v~~a~~~~~~-~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~   83 (383)
T Consensus         1 IYlD~AAtt~~~~~V~~a~~~~~~~~~~np~~~h~~~~~a~~~~e~aR~~iA~~lga~~~eIvFt~~~T~a~n~~i~~~~   80 (379)
T TIGR03402         1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSAL   80 (379)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             94417665889999999999999965899776589999999999999999999829996739992887999999999999


Q ss_pred             HHCCCCCCCCEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf             21022456645873332122111222222---222222222222211102345532443113565326540343444333
Q gi|254781091|r   84 YQGSHKISIDSLYISAIEHPAVYAGGHFP---SHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVI  160 (383)
Q Consensus        84 ~~~~~~~~~~~ii~s~~eH~s~~~~~~~~---~~~v~~v~~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i  160 (383)
T Consensus        81 ~~---~~~~d~Ii~s~~eH~a~~~~~~~l~~~g~~v~~~~~~~~g~id~~~l~~~l~~~T-----~lvs~~~~sn~tG~i  152 (379)
T TIGR03402        81 AA---QPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDT-----ALVSVMWANNETGTI  152 (379)
T ss_pred             HH---CCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCC-----EEEEEECCCCCCCHH
T ss_conf             86---7999999980131045667999999659889997037898264266788726786-----289961257888701


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21123565203446533444323365544444334310687305433223432011014574201221224774212222
Q gi|254781091|r  161 QPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA  240 (383)
Q Consensus       161 ~pi~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~~~~S~hK~~GP~G~G~L~~r~~~~~~~p~~~Gg~~e~~~~~  240 (383)
T Consensus       153 ~pv~~I~~~~~~~g~~~~vDa~Q~~g~~pidv~~~~~D~~~~S~hK~~GP~G~G~Ly~r~~~~~-~P~~~Gg~~e~~~~~  231 (379)
T TIGR03402       153 FPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTRF-RPLLRGGHQERGRRA  231 (379)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCEECCHHHCCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCC
T ss_conf             7899999999763988994531124664640344157721202111368872599998267666-876788887777678


Q ss_pred             CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHC
Q ss_conf             22211222100122110010024565321012333344444321000122322110365228985799999999998758
Q gi|254781091|r  241 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLE  320 (383)
Q Consensus       241 GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~v~~~l~~~  320 (383)
T Consensus       232 GT~n~~~i~gl~~a~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~~~i~g~~~~r~p~~~~~~~~~~~~~~i~~~L~~~  311 (379)
T TIGR03402       232 GTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDME  311 (379)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCCCEEECCCCCCHHHHHHHHCCC
T ss_conf             97129999999999999997599999999999999999998508982754786664887303236998999999984518


Q ss_pred             CCEEEECHHHCCCCCCCCHHHHHCCCCC--CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             9699871133886433101467628887--476599990788899999999999999998623
Q gi|254781091|r  321 GIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRVSCGDSTTQEDIDIFLNALQKIIRTST  381 (383)
Q Consensus       321 gI~v~~G~~C~~~~~~~~~vl~~~g~~~--~~g~vRiS~~~~nT~~dId~l~~~L~~iv~~~~  381 (383)
T Consensus       312 gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ynT~edId~li~aL~~iv~~lr  374 (379)
T TIGR03402       312 GICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             CEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             929975032159998624999975998333395699973899999999999999999999998