>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

Probab=99.81 E-value=2.9e-18 Score=130.35 Aligned_cols=315 Identities=15% Similarity=0.166 Sum_probs=177.3 Q ss_pred CCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHH-HEEEECCHHHHHHHHHHH Q ss_conf 9898999999999964---28852365899999999999999999972--------98977-898866853876445565 Q gi|254781091|r 14 PLLEVVRQSFVKSLDF---YGNPSSVHKEGQKTRLYIEESRRIIADFC--------GAKPD-HVVFTSSATEAANWVLTP 81 (383) Q Consensus 14 p~~~~v~~a~~~~~~~---~~n~~s~h~~~~~~~~~~e~aR~~ia~~~--------g~~~~-ei~ft~~~T~a~~~~i~~ 81 (383) T Consensus 42 ~~P~~v~ea~~~al~~~~~Y~~~~G-----------~~~LReAia~~~~~~~~~~~~~dp~~~I~vt~Ga~~al~~~~~~ 110 (394) T TIGR03538 42 ATPAFVLEALRENLHGLSTYPTTKG-----------LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQA 110 (394) T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHH T ss_conf 9779999999998438889999988-----------69999999999999739887789677699898889999999999 Q ss_pred HHHHCCCCCCCCE--EEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC Q ss_conf 4421022456645--873332122111222222222222222222--211102345532443113565326540343444 Q gi|254781091|r 82 HFYQGSHKISIDS--LYISAIEHPAVYAGGHFPSHKIHKIPVLSK--GIVDIQALTDFLEQRNSTCGIPMIAVMFVNNET 157 (383) Q Consensus 82 ~~~~~~~~~~~~~--ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~--g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~t 157 (383) T Consensus 111 l~~------pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l~~~~~~~tk-----~iil~sP~NPT 179 (394) T TIGR03538 111 VIN------PGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ-----LLFVCSPGNPT 179 (394) T ss_pred HCC------CCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCE-----EEEECCCCCCC T ss_conf 729------9981089947886645299999759989975867345888899999874523665-----99988999998 Q ss_pred CCCCC---HHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCC----CCCCC-----EEEEECCCC-CCCCCC--CHHHH Q ss_conf 33321---12356520344653344432336-----5544444----33431-----068730543-322343--20110 Q gi|254781091|r 158 GVIQP---IKEIAQIVKEYQGILVVDAVQAA-----GRIPLSI----EEIKA-----DFLIISSHK-LGAPVG--AGALV 217 (383) Q Consensus 158 G~i~p---i~~I~~~~~~~g~~~~vD~aqa~-----g~~~id~----~~~~~-----D~~~~S~hK-~~GP~G--~G~L~ 217 (383) T Consensus 180 G~v~s~~~l~~l~~~a~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RiG~~~ 258 (394) T TIGR03538 180 GAVLSLETLKKLIELADQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSKRSNLP-GLRSGFVA 258 (394) T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-CCEEEEEE T ss_conf 97778799999999973267699980683327857888973787777662544447679995565444546-75179995 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 14574201221224774212222222112221001221100100245653210123333444443210001223221103 Q gi|254781091|r 218 FREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERI 297 (383) Q Consensus 218 ~r~~~~~~~p~~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~ 297 (383) T Consensus 259 ~~~~~i~~~~~~~-----~~~~~~~~~~~q~a~-~aa~~~-~~~~~~~r~~~~~r~~~~~~~L~~~---~~~~--~P~-- 324 (394) T TIGR03538 259 GDAEILKAFLRYR-----TYHGCAMPPPTQLAS-IAAWND-EQHVRENRALYREKFAAVLEILGPV---LDLE--LPD-- 324 (394) T ss_pred CCHHHHHHHHHHC-----CCCCCCCCHHHHHHH-HHHHCC-HHHHHHHHHHHHHHHHHHHHHHHCC---CCCC--CCC-- T ss_conf 7999999999852-----237426899999999-998489-8999999999999999999986427---9625--798-- Q ss_pred CCEEEE-EECCCCHHHHH-HHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 652289-85799999999-9987589699871133886433101467628887476599990788899999999999999 Q gi|254781091|r 298 SNTCCF-SIPFLKAEVLQ-IALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQK 375 (383) Q Consensus 298 ~~i~~~-~~~~~~~~~v~-~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~ 375 (383) T Consensus 325 Gg~y~w~~~~~-~~~~f~~~ll~e~gV~v~PG~~F~~~~~---------~~~~G~g~iR~s~~--~~~e~l~ea~~Rl~~ 392 (394) T TIGR03538 325 AGFYLWPKVPG-DDEAFARALYEEENVTVLPGRYLSREAE---------GVNPGAGRVRIALV--APLEECVEAAERIRR 392 (394) T ss_pred EEEEEEEECCC-CHHHHHHHHHHHCCEEEECCHHHCCCCC---------CCCCCCCEEEEEEC--CCHHHHHHHHHHHHH T ss_conf 54899996899-9999999999868999987734165545---------78889998999975--989999999999998 Q ss_pred HH Q ss_conf 99 Q gi|254781091|r 376 II 377 (383) Q Consensus 376 iv 377 (383) T Consensus 393 fl 394 (394) T TIGR03538 393 FI 394 (394) T ss_pred HC T ss_conf 69

HHsearch alignment for GI: 254781091 and conserved domain: TIGR03538