HHsearch alignment for GI: 254781091 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.85 E-value=1.2e-19 Score=138.72 Aligned_cols=317 Identities=18% Similarity=0.236 Sum_probs=193.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----CC--CCHHH-EEEECCHHHHHHHHHHHHHHHC
Q ss_conf 98989999999999642885236589999999999999999997----29--89778-9886685387644556544210
Q gi|254781091|r 14 PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADF----CG--AKPDH-VVFTSSATEAANWVLTPHFYQG 86 (383)
Q Consensus 14 p~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~----~g--~~~~e-i~ft~~~T~a~~~~i~~~~~~~ 86 (383)
T Consensus 42 ~~p~~i~~a~~~a~~~~~~~--~Y~~~~G----~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~--- 112 (383)
T TIGR03540 42 PTPKHIVEALCKAAENPENH--RYPSYEG----MLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV--- 112 (383)
T ss_pred CCCHHHHHHHHHHHHCCCCC--CCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHC---
T ss_conf 98999999999998288876--5499878----49999999999999868989967669984782599999999966---
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC--
Q ss_conf 22456645873332122111222222222222222222--21110234553244311356532654034344433321--
Q gi|254781091|r 87 SHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSK--GIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP-- 162 (383)
Q Consensus 87 ~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~--g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p-- 162 (383)
T Consensus 113 ---~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k-----~iil~~P~NPTG~v~s~~ 184 (383)
T TIGR03540 113 ---NPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAK-----LMFINYPNNPTGAVAPLK 184 (383)
T ss_pred ---CCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCE-----EEEECCCCCCCCCCCCCH
T ss_conf ---898989987898601699999719858996133577985799999874523774-----999899989707012102
Q ss_pred -HHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCC----CCEEEEECCCCCCCCCC--CHHHHCCCCCCCCCCCCCC
Q ss_conf -12356520344653344432336----5544444334----31068730543322343--2011014574201221224
Q gi|254781091|r 163 -IKEIAQIVKEYQGILVVDAVQAA----GRIPLSIEEI----KADFLIISSHKLGAPVG--AGALVFREDILLPSPLLRG 231 (383)
Q Consensus 163 -i~~I~~~~~~~g~~~~vD~aqa~----g~~~id~~~~----~~D~~~~S~hK~~GP~G--~G~L~~r~~~~~~~p~~~G 231 (383)
T Consensus 185 ~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~i~~~~l~~~~~~~~- 263 (383)
T TIGR03540 185 FFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVK- 263 (383)
T ss_pred HHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH-
T ss_conf 2220100124554057611025553038999977111366554257763023544788734896228999999999997-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EEEC-CCC
Q ss_conf 77421222222211222100122110010024565321012333344444321000122322110365228-9857-999
Q gi|254781091|r 232 GDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCC-FSIP-FLK 309 (383)
Q Consensus 232 g~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~-~~~~-~~~ 309 (383)
T Consensus 264 ----~~~~~~~~~~~q~a~-~~al~~~~~~~~~~~~~~~~~r~~~~~~L~~~--g~~~~~p~----g~~~~w~~~~~~~~ 332 (383)
T TIGR03540 264 ----TNVDSGVFQAIQYAA-IAALNGPQDVVKEIRKIYQRRRDLLLEALKKI--GIDVEKPK----ATFYVWVPVPEGYT 332 (383)
T ss_pred ----HHHCCCCCHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEECCC----CEEEEEEECCCCCC
T ss_conf ----551356765999999-99985919999999999999999999999876--98773578----05799898999989
Q ss_pred HHHHHH-HHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999-9875896998711338864331014676288874765999907888999999999999999
Q gi|254781091|r 310 AEVLQI-ALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKI 376 (383)
Q Consensus 310 ~~~v~~-~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~i 376 (383)
T Consensus 333 ~~~~~~~ll~~~gV~v~PG~~Fg~---------------~g~~~iRl~~~--~~~e~l~eal~RL~kl 383 (383)
T TIGR03540 333 SAEFAARLLEETGVVVTPGVGFGE---------------YGEGYIRISLT--VPDERLEEAVARIKKL 383 (383)
T ss_pred HHHHHHHHHHHCCEEEECCHHHCC---------------CCCCEEEEEEE--CCHHHHHHHHHHHHCC
T ss_conf 899999999839999988853288---------------99886999986--9999999999998449