HHsearch alignment for GI: 254781091 and conserved domain: TIGR03540

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.85  E-value=1.2e-19  Score=138.72  Aligned_cols=317  Identities=18%  Similarity=0.236  Sum_probs=193.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----CC--CCHHH-EEEECCHHHHHHHHHHHHHHHC
Q ss_conf             98989999999999642885236589999999999999999997----29--89778-9886685387644556544210
Q gi|254781091|r   14 PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADF----CG--AKPDH-VVFTSSATEAANWVLTPHFYQG   86 (383)
Q Consensus        14 p~~~~v~~a~~~~~~~~~n~~s~h~~~~~~~~~~e~aR~~ia~~----~g--~~~~e-i~ft~~~T~a~~~~i~~~~~~~   86 (383)
T Consensus        42 ~~p~~i~~a~~~a~~~~~~~--~Y~~~~G----~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~---  112 (383)
T TIGR03540        42 PTPKHIVEALCKAAENPENH--RYPSYEG----MLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV---  112 (383)
T ss_pred             CCCHHHHHHHHHHHHCCCCC--CCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHC---
T ss_conf             98999999999998288876--5499878----49999999999999868989967669984782599999999966---


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC--
Q ss_conf             22456645873332122111222222222222222222--21110234553244311356532654034344433321--
Q gi|254781091|r   87 SHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSK--GIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP--  162 (383)
Q Consensus        87 ~~~~~~~~ii~s~~eH~s~~~~~~~~~~~v~~v~~~~~--g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p--  162 (383)
T Consensus       113 ---~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k-----~iil~~P~NPTG~v~s~~  184 (383)
T TIGR03540       113 ---NPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAK-----LMFINYPNNPTGAVAPLK  184 (383)
T ss_pred             ---CCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCE-----EEEECCCCCCCCCCCCCH
T ss_conf             ---898989987898601699999719858996133577985799999874523774-----999899989707012102


Q ss_pred             -HHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCC----CCEEEEECCCCCCCCCC--CHHHHCCCCCCCCCCCCCC
Q ss_conf             -12356520344653344432336----5544444334----31068730543322343--2011014574201221224
Q gi|254781091|r  163 -IKEIAQIVKEYQGILVVDAVQAA----GRIPLSIEEI----KADFLIISSHKLGAPVG--AGALVFREDILLPSPLLRG  231 (383)
Q Consensus       163 -i~~I~~~~~~~g~~~~vD~aqa~----g~~~id~~~~----~~D~~~~S~hK~~GP~G--~G~L~~r~~~~~~~p~~~G  231 (383)
T Consensus       185 ~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~i~~~~l~~~~~~~~-  263 (383)
T TIGR03540       185 FFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVK-  263 (383)
T ss_pred             HHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHH-
T ss_conf             2220100124554057611025553038999977111366554257763023544788734896228999999999997-


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EEEC-CCC
Q ss_conf             77421222222211222100122110010024565321012333344444321000122322110365228-9857-999
Q gi|254781091|r  232 GDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCC-FSIP-FLK  309 (383)
Q Consensus       232 g~~e~~~~~GT~~~~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~-~~~~-~~~  309 (383)
T Consensus       264 ----~~~~~~~~~~~q~a~-~~al~~~~~~~~~~~~~~~~~r~~~~~~L~~~--g~~~~~p~----g~~~~w~~~~~~~~  332 (383)
T TIGR03540       264 ----TNVDSGVFQAIQYAA-IAALNGPQDVVKEIRKIYQRRRDLLLEALKKI--GIDVEKPK----ATFYVWVPVPEGYT  332 (383)
T ss_pred             ----HHHCCCCCHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEECCC----CEEEEEEECCCCCC
T ss_conf             ----551356765999999-99985919999999999999999999999876--98773578----05799898999989


Q ss_pred             HHHHHH-HHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             999999-9875896998711338864331014676288874765999907888999999999999999
Q gi|254781091|r  310 AEVLQI-ALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKI  376 (383)
Q Consensus       310 ~~~v~~-~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L~~i  376 (383)
T Consensus       333 ~~~~~~~ll~~~gV~v~PG~~Fg~---------------~g~~~iRl~~~--~~~e~l~eal~RL~kl  383 (383)
T TIGR03540       333 SAEFAARLLEETGVVVTPGVGFGE---------------YGEGYIRISLT--VPDERLEEAVARIKKL  383 (383)
T ss_pred             HHHHHHHHHHHCCEEEECCHHHCC---------------CCCCEEEEEEE--CCHHHHHHHHHHHHCC
T ss_conf             899999999839999988853288---------------99886999986--9999999999998449