HHsearch alignment for GI: 254781091 and conserved domain: TIGR03588

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.85  E-value=4.7e-20  Score=141.19  Aligned_cols=333  Identities=18%  Similarity=0.153  Sum_probs=200.1

Q ss_pred             CCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             89899999999996-42885236589999999999999999997298977898866853876445565442102245664
Q gi|254781091|r   15 LLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISID   93 (383)
Q Consensus        15 ~~~~v~~a~~~~~~-~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~   93 (383)
T Consensus         8 i~~~e~~~v~~~l~s~~~------~~G~----~v~~fE~~~~~~~g~k--~~v~~~sgT~AL~lal~al-----~~~~gd   70 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSDFL------TQGP----TVPAFEEALAEYVGAK--YAVAFNSATSALHIACLAL-----GVGPGD   70 (380)
T ss_pred             CCHHHHHHHHHHHHCCCC------CCCH----HHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHHHC-----CCCCCC
T ss_conf             999999999999847986------6897----6999999999997859--4999758899999999984-----999989


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCC
Q ss_conf             58733321221112222222222222222-22211102345532443113565326540343444333211235652034
Q gi|254781091|r   94 SLYISAIEHPAVYAGGHFPSHKIHKIPVL-SKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKE  172 (383)
Q Consensus        94 ~ii~s~~eH~s~~~~~~~~~~~v~~v~~~-~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~pi~~I~~~~~~  172 (383)
T Consensus        71 eVivp~~tf~at~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~-~~ktkaIi~vh~~---G~~~d~~~i~~ia~~  146 (380)
T TIGR03588        71 EVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK-GKLPKAIVPVDFA---GKSVDMQAIAALAKK  146 (380)
T ss_pred             EEEECCCCCHHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCC-CCCCEEEEEECCC---CEECCHHHHHHHHHH
T ss_conf             999678530886799998799689984410001489888777776436-7772599994898---543489999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC----CEEEEECCC--CCCCCCCC-HHHHCCCCCC-CCCCC--CCCCCCC-------
Q ss_conf             465334443233655444443343----106873054--33223432-0110145742-01221--2247742-------
Q gi|254781091|r  173 YQGILVVDAVQAAGRIPLSIEEIK----ADFLIISSH--KLGAPVGA-GALVFREDIL-LPSPL--LRGGDQE-------  235 (383)
Q Consensus       173 ~g~~~~vD~aqa~g~~~id~~~~~----~D~~~~S~h--K~~GP~G~-G~L~~r~~~~-~~~p~--~~Gg~~e-------  235 (383)
T Consensus       147 ~~i~lIEDaA~a~Ga~-~~gk~~Gs~~~gd~~~fSF~~~K~it-tGeGG~i~tnd~~l~~~~r~lr~~G~~~~~~~~~~~  224 (380)
T TIGR03588       147 HGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIIT-TAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQ  224 (380)
T ss_pred             CCCEEEEECCCHHCCC-CCCCCCCCCCCCCEEEEECCCCCCCC-CCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHCCC
T ss_conf             6988999880011577-57876566443524677335555577-788539996999999999999976967773100146


Q ss_pred             --CCC-----CCCCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCEEEEEE
Q ss_conf             --122-----2222211-22210012211001002456532101233334444432100012232211--0365228985
Q gi|254781091|r  236 --KGQ-----RAGTENY-AVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAE--RISNTCCFSI  305 (383)
Q Consensus       236 --~~~-----~~GT~~~-~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~--~~~~i~~~~~  305 (383)
T Consensus       225 ~~~~~~y~~~~~G~-N~rmseiqAAig~~qL-~~ld~~~~~R~~ia~~Y~~~L~~~-~~~~~~~~~~~~~~~~~~y~i~~  301 (380)
T TIGR03588       225 DEGPWYYEQQELGF-NYRMTDIQAALGLSQL-KKLDRFVAKRREIAARYDRLLKDL-PYFTPLTIPLGSKSAWHLYPILL  301 (380)
T ss_pred             CCCCCEEEEECCCC-CCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             78874036634766-6543124148768888-889999999999999999964789-98356746999831568999998


Q ss_pred             CC---CCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHH-CC---CCC----CCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             79---999999999875896998711338864331014676-28---887----47659999078889999999999999
Q gi|254781091|r  306 PF---LKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAA-MG---FDT----SQGAVRVSCGDSTTQEDIDIFLNALQ  374 (383)
Q Consensus       306 ~~---~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~-~g---~~~----~~g~vRiS~~~~nT~~dId~l~~~L~  374 (383)
T Consensus       302 ~~~~~~~r~~l~~~L~~~gI~t~~~--y~Plh~~p--~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik  377 (380)
T TIGR03588       302 DQEFGCTRKEVFEALRAAGIGVQVH--YIPVHLQP--YYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLR  377 (380)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEE--CCCHHCCH--HHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             2667314999999999779985672--30442299--8882788799879999984979897999989999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254781091|r  375 KII  377 (383)
Q Consensus       375 ~iv  377 (383)
T Consensus       378 ~vL  380 (380)
T TIGR03588       378 KVL  380 (380)
T ss_pred             HHC
T ss_conf             869