HHsearch alignment for GI: 254781091 and conserved domain: TIGR03588
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.85 E-value=4.7e-20 Score=141.19 Aligned_cols=333 Identities=18% Similarity=0.153 Sum_probs=200.1
Q ss_pred CCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89899999999996-42885236589999999999999999997298977898866853876445565442102245664
Q gi|254781091|r 15 LLEVVRQSFVKSLD-FYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISID 93 (383)
Q Consensus 15 ~~~~v~~a~~~~~~-~~~n~~s~h~~~~~~~~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~ 93 (383)
T Consensus 8 i~~~e~~~v~~~l~s~~~------~~G~----~v~~fE~~~~~~~g~k--~~v~~~sgT~AL~lal~al-----~~~~gd 70 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSDFL------TQGP----TVPAFEEALAEYVGAK--YAVAFNSATSALHIACLAL-----GVGPGD 70 (380)
T ss_pred CCHHHHHHHHHHHHCCCC------CCCH----HHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHHHC-----CCCCCC
T ss_conf 999999999999847986------6897----6999999999997859--4999758899999999984-----999989
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCC
Q ss_conf 58733321221112222222222222222-22211102345532443113565326540343444333211235652034
Q gi|254781091|r 94 SLYISAIEHPAVYAGGHFPSHKIHKIPVL-SKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKE 172 (383)
Q Consensus 94 ~ii~s~~eH~s~~~~~~~~~~~v~~v~~~-~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~pi~~I~~~~~~ 172 (383)
T Consensus 71 eVivp~~tf~at~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~-~~ktkaIi~vh~~---G~~~d~~~i~~ia~~ 146 (380)
T TIGR03588 71 EVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK-GKLPKAIVPVDFA---GKSVDMQAIAALAKK 146 (380)
T ss_pred EEEECCCCCHHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCC-CCCCEEEEEECCC---CEECCHHHHHHHHHH
T ss_conf 999678530886799998799689984410001489888777776436-7772599994898---543489999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----CEEEEECCC--CCCCCCCC-HHHHCCCCCC-CCCCC--CCCCCCC-------
Q ss_conf 465334443233655444443343----106873054--33223432-0110145742-01221--2247742-------
Q gi|254781091|r 173 YQGILVVDAVQAAGRIPLSIEEIK----ADFLIISSH--KLGAPVGA-GALVFREDIL-LPSPL--LRGGDQE------- 235 (383)
Q Consensus 173 ~g~~~~vD~aqa~g~~~id~~~~~----~D~~~~S~h--K~~GP~G~-G~L~~r~~~~-~~~p~--~~Gg~~e------- 235 (383)
T Consensus 147 ~~i~lIEDaA~a~Ga~-~~gk~~Gs~~~gd~~~fSF~~~K~it-tGeGG~i~tnd~~l~~~~r~lr~~G~~~~~~~~~~~ 224 (380)
T TIGR03588 147 HGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIIT-TAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQ 224 (380)
T ss_pred CCCEEEEECCCHHCCC-CCCCCCCCCCCCCEEEEECCCCCCCC-CCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHCCC
T ss_conf 6988999880011577-57876566443524677335555577-788539996999999999999976967773100146
Q ss_pred --CCC-----CCCCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCEEEEEE
Q ss_conf --122-----2222211-22210012211001002456532101233334444432100012232211--0365228985
Q gi|254781091|r 236 --KGQ-----RAGTENY-AVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAE--RISNTCCFSI 305 (383)
Q Consensus 236 --~~~-----~~GT~~~-~~i~~~~~al~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~--~~~~i~~~~~ 305 (383)
T Consensus 225 ~~~~~~y~~~~~G~-N~rmseiqAAig~~qL-~~ld~~~~~R~~ia~~Y~~~L~~~-~~~~~~~~~~~~~~~~~~y~i~~ 301 (380)
T TIGR03588 225 DEGPWYYEQQELGF-NYRMTDIQAALGLSQL-KKLDRFVAKRREIAARYDRLLKDL-PYFTPLTIPLGSKSAWHLYPILL 301 (380)
T ss_pred CCCCCEEEEECCCC-CCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 78874036634766-6543124148768888-889999999999999999964789-98356746999831568999998
Q ss_pred CC---CCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHH-CC---CCC----CCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 79---999999999875896998711338864331014676-28---887----47659999078889999999999999
Q gi|254781091|r 306 PF---LKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAA-MG---FDT----SQGAVRVSCGDSTTQEDIDIFLNALQ 374 (383)
Q Consensus 306 ~~---~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~-~g---~~~----~~g~vRiS~~~~nT~~dId~l~~~L~ 374 (383)
T Consensus 302 ~~~~~~~r~~l~~~L~~~gI~t~~~--y~Plh~~p--~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik 377 (380)
T TIGR03588 302 DQEFGCTRKEVFEALRAAGIGVQVH--YIPVHLQP--YYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLR 377 (380)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEE--CCCHHCCH--HHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 2667314999999999779985672--30442299--8882788799879999984979897999989999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781091|r 375 KII 377 (383)
Q Consensus 375 ~iv 377 (383)
T Consensus 378 ~vL 380 (380)
T TIGR03588 378 KVL 380 (380)
T ss_pred HHC
T ss_conf 869