HHsearch alignment for GI: 254781091 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.83 E-value=2.5e-19 Score=136.81 Aligned_cols=335 Identities=18% Similarity=0.199 Sum_probs=216.4
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHH
Q ss_conf 57888989899999999996-42--885236589999999999-999999997298977898866853876445565442
Q gi|254781091|r 9 WNATAPLLEVVRQSFVKSLD-FY--GNPSSVHKEGQKTRLYIE-ESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFY 84 (383)
Q Consensus 9 ~aattp~~~~v~~a~~~~~~-~~--~n~~s~h~~~~~~~~~~e-~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~ 84 (383)
T Consensus 25 IaSEN~~S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~~anVqp~-SGs~AN~av~~all~ 103 (402)
T cd00378 25 IASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPH-SGSQANLAVYFALLE 103 (402)
T ss_pred ECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHC
T ss_conf 5576647999999856730154768899864667662599999999999999838987475878-739999999999727
Q ss_pred HCCCCCCCCEEEECCCCCCCCC-----CCCCCCCCCCCCCC--CC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 1022456645873332122111-----22222222222222--22-2221110234553244311356532654034344
Q gi|254781091|r 85 QGSHKISIDSLYISAIEHPAVY-----AGGHFPSHKIHKIP--VL-SKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNE 156 (383)
Q Consensus 85 ~~~~~~~~~~ii~s~~eH~s~~-----~~~~~~~~~v~~v~--~~-~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~ 156 (383)
T Consensus 104 ------pGD~il~l~l~~GGHltHg~~~~v~~~g~~~~~~~Y~vd~~~~~IDyd~~~~~a~~~----kPklIi~G~-S~- 171 (402)
T cd00378 104 ------PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF----KPKLIVAGA-SA- 171 (402)
T ss_pred ------CCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHC----CCCEEEECC-CC-
T ss_conf ------999899866434777566778772021356788963245565871899999999865----996999777-15-
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEEEEECCCC-CCCCCCCHHHHCCCC-CCCC-CCC
Q ss_conf 43332112356520344653344432336554-----444433431068730543-322343201101457-4201-221
Q gi|254781091|r 157 TGVIQPIKEIAQIVKEYQGILVVDAVQAAGRI-----PLSIEEIKADFLIISSHK-LGAPVGAGALVFRED-ILLP-SPL 228 (383)
Q Consensus 157 tG~i~pi~~I~~~~~~~g~~~~vD~aqa~g~~-----~id~~~~~~D~~~~S~hK-~~GP~G~G~L~~r~~-~~~~-~p~ 228 (383)
T Consensus 172 y~r~~d~~~~reIad~vgA~l~~D~aHi~GLIA~g~~p~Pl~--~ADvvt~tTHKTlrGPrG-GiIl~~~~~~~~kId~a 248 (402)
T cd00378 172 YPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSA 248 (402)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCCCCCC--CCEEEECCCCCCCCCCCC-EEEEECCHHHHHHHHHH
T ss_conf 656558899999998709889855012344303565799768--765774464345789984-08995427899885465
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE--
Q ss_conf 22477421222222211222100122110010-024565321012333344444321000122322110365228985--
Q gi|254781091|r 229 LRGGDQEKGQRAGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSI-- 305 (383)
Q Consensus 229 ~~Gg~~e~~~~~GT~~~~~i~~~~~al~~~~~-~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~-- 305 (383)
T Consensus 249 vfPg------~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~--G~~vv~ggTd--~H~vlvd~~~ 318 (402)
T cd00378 249 VFPG------LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER--GFKVVSGGTD--NHLVLVDLRP 318 (402)
T ss_pred HCCC------CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--CCEEECCCCC--CCEEEEECCC
T ss_conf 0986------4467456678999999999868668999999999999999999858--9479748998--8779996664
Q ss_pred CCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCC----CHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999875896998711338864331014676288874765999907888----9999999999999999862
Q gi|254781091|r 306 PFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDST----TQEDIDIFLNALQKIIRTS 380 (383)
Q Consensus 306 ~~~~~~~v~~~l~~~gI~v~~G~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~n----T~~dId~l~~~L~~iv~~~ 380 (383)
T Consensus 319 ~g~~G~~a~~~Le~~gI~~Nk-------n~iP~d~~----~~~~~sGiRiGT~a~T~rG~~e~em~~ia~lI~~~l~~~ 386 (402)
T cd00378 319 KGITGKAAEDALEEAGITVNK-------NTLPWDPS----SPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDA 386 (402)
T ss_pred CCCCHHHHHHHHHHCCEEECC-------CCCCCCCC----CCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 568999999999984908754-------74889999----999997616477899858998899999999999998178