HHsearch alignment for GI: 254781091 and conserved domain: cd00613

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.80  E-value=5.7e-18  Score=128.58  Aligned_cols=298  Identities=20%  Similarity=0.259  Sum_probs=186.3

Q ss_pred             HHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf             99999999999972989778988668538764455654421022456645873332122111222222----22222222
Q gi|254781091|r   45 LYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFP----SHKIHKIP  120 (383)
Q Consensus        45 ~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~----~~~v~~v~  120 (383)
T Consensus        64 q~~~e~Qs~i~eLtGmdv~naSl~d~a~A~aEa~~ma~~~~~---~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~~v~  140 (398)
T cd00613          64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAY---HKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP  140 (398)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             999999999999868883563268767799999999999862---68998997787780369999998612586589942


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             222221110234553244311356532654034344433321-1235652034465334443233655444443343106
Q gi|254781091|r  121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP-IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADF  199 (383)
Q Consensus       121 ~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p-i~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~  199 (383)
T Consensus       141 ~~~~G~~d~~~l~~~~~~~~a-----~v~v~~P-n~~G~~e~~~~~i~~~~h~~gal~~~~~~~~~l~~l~~Pg~~GaDI  214 (398)
T cd00613         141 SDEGGTVDLEALKEEVSEEVA-----ALMVQYP-NTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADI  214 (398)
T ss_pred             CCCCCCCCHHHHHHHCCCCEE-----EEEECCC-CCCEEEECCHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCCCCE
T ss_conf             666777465888875078859-----9995279-9962785199999999987598699974403531555710047877


Q ss_pred             EEECCCCCC-----CCCCCHHHHCCCCCCCCCCC-CCCC-----------------CCCCCCCCCCCCCCCC---CCHHH
Q ss_conf             873054332-----23432011014574201221-2247-----------------7421222222211222---10012
Q gi|254781091|r  200 LIISSHKLG-----APVGAGALVFREDILLPSPL-LRGG-----------------DQEKGQRAGTENYAVI---GGFAV  253 (383)
Q Consensus       200 ~~~S~hK~~-----GP~G~G~L~~r~~~~~~~p~-~~Gg-----------------~~e~~~~~GT~~~~~i---~~~~~  253 (383)
T Consensus       215 ~~g~~q~~g~P~~~GGP~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a  294 (398)
T cd00613         215 VVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMA  294 (398)
T ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf             98525114665666887443266799877358998565047888874215441354333677752881643278999999


Q ss_pred             HH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHHCCCEEEEC
Q ss_conf             21---1001002456532101233334444432100012232211036522898579---99999999987589699871
Q gi|254781091|r  254 AA---QQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPF---LKAEVLQIALDLEGIAVSAG  327 (383)
Q Consensus       254 al---~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~~v~~~l~~~gI~v~~G  327 (383)
T Consensus       295 ~~Y~~~lG~~GL~~va~~~~~~A~Yl~~~L~~~-~~~~~~~---~~~f~EFvi~~~~~~~~~~~~l~k~~i~~G~~~~--  368 (398)
T cd00613         295 AMYIVYLGPEGLKEIAERAHLNANYLAKRLKEV-GGVLPFN---GPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAP--  368 (398)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC---CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC--
T ss_conf             999998488638899999999999999999863-8982689---9866699997687547689999973621582866--


Q ss_pred             HHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             1338864331014676288874765999907888999999999999
Q gi|254781091|r  328 SACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNAL  373 (383)
Q Consensus       328 ~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L  373 (383)
T Consensus       369 ------~~----------y~~~~~~lli~~TE~~skediD~l~~aL  398 (398)
T cd00613         369 ------TM----------YLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             ------CC----------CCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf             ------46----------8888997999805899999999999749