HHsearch alignment for GI: 254781091 and conserved domain: cd00613
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.80 E-value=5.7e-18 Score=128.58 Aligned_cols=298 Identities=20% Similarity=0.259 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCC----CCCCCCCC
Q ss_conf 99999999999972989778988668538764455654421022456645873332122111222222----22222222
Q gi|254781091|r 45 LYIEESRRIIADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFP----SHKIHKIP 120 (383)
Q Consensus 45 ~~~e~aR~~ia~~~g~~~~ei~ft~~~T~a~~~~i~~~~~~~~~~~~~~~ii~s~~eH~s~~~~~~~~----~~~v~~v~ 120 (383)
T Consensus 64 q~~~e~Qs~i~eLtGmdv~naSl~d~a~A~aEa~~ma~~~~~---~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~~v~ 140 (398)
T cd00613 64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAY---HKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP 140 (398)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999868883563268767799999999999862---68998997787780369999998612586589942
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 222221110234553244311356532654034344433321-1235652034465334443233655444443343106
Q gi|254781091|r 121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP-IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADF 199 (383)
Q Consensus 121 ~~~~g~i~~~~l~~~i~~~t~~~~~~LVs~~~~~n~tG~i~p-i~~I~~~~~~~g~~~~vD~aqa~g~~~id~~~~~~D~ 199 (383)
T Consensus 141 ~~~~G~~d~~~l~~~~~~~~a-----~v~v~~P-n~~G~~e~~~~~i~~~~h~~gal~~~~~~~~~l~~l~~Pg~~GaDI 214 (398)
T cd00613 141 SDEGGTVDLEALKEEVSEEVA-----ALMVQYP-NTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADI 214 (398)
T ss_pred CCCCCCCCHHHHHHHCCCCEE-----EEEECCC-CCCEEEECCHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCCCCE
T ss_conf 666777465888875078859-----9995279-9962785199999999987598699974403531555710047877
Q ss_pred EEECCCCCC-----CCCCCHHHHCCCCCCCCCCC-CCCC-----------------CCCCCCCCCCCCCCCC---CCHHH
Q ss_conf 873054332-----23432011014574201221-2247-----------------7421222222211222---10012
Q gi|254781091|r 200 LIISSHKLG-----APVGAGALVFREDILLPSPL-LRGG-----------------DQEKGQRAGTENYAVI---GGFAV 253 (383)
Q Consensus 200 ~~~S~hK~~-----GP~G~G~L~~r~~~~~~~p~-~~Gg-----------------~~e~~~~~GT~~~~~i---~~~~~ 253 (383)
T Consensus 215 ~~g~~q~~g~P~~~GGP~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a 294 (398)
T cd00613 215 VVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMA 294 (398)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 98525114665666887443266799877358998565047888874215441354333677752881643278999999
Q ss_pred HH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC---CCHHHHHHHHHHCCCEEEEC
Q ss_conf 21---1001002456532101233334444432100012232211036522898579---99999999987589699871
Q gi|254781091|r 254 AA---QQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPF---LKAEVLQIALDLEGIAVSAG 327 (383)
Q Consensus 254 al---~~~~~~~~~~~~~~~~L~~~l~~~l~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~~v~~~l~~~gI~v~~G 327 (383)
T Consensus 295 ~~Y~~~lG~~GL~~va~~~~~~A~Yl~~~L~~~-~~~~~~~---~~~f~EFvi~~~~~~~~~~~~l~k~~i~~G~~~~-- 368 (398)
T cd00613 295 AMYIVYLGPEGLKEIAERAHLNANYLAKRLKEV-GGVLPFN---GPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAP-- 368 (398)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC---CCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC--
T ss_conf 999998488638899999999999999999863-8982689---9866699997687547689999973621582866--
Q ss_pred HHHCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 1338864331014676288874765999907888999999999999
Q gi|254781091|r 328 SACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNAL 373 (383)
Q Consensus 328 ~~C~~~~~~~~~vl~~~g~~~~~g~vRiS~~~~nT~~dId~l~~~L 373 (383)
T Consensus 369 ------~~----------y~~~~~~lli~~TE~~skediD~l~~aL 398 (398)
T cd00613 369 ------TM----------YLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ------CC----------CCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf ------46----------8888997999805899999999999749