RPSBLAST alignment for GI: 254781091 and conserved domain: TIGR03403
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. Length = 382
Score = 220 bits (562), Expect = 5e-58
Identities = 129/385 (33%), Positives = 206/385 (53%), Gaps = 22/385 (5%)
Query: 5 VYLDWNATA---PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEES-RRIIADFCGA 60
VYLD NAT P ++ + F D YGNP+S+H+ G T I E+ ++
Sbjct: 1 VYLDNNATTMLDPKVKELMDPFFC--DIYGNPNSLHQFGTATHPAIAEALDKLYKGINAR 58
Query: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSH---KIH 117
D ++ TS ATE+ NWVL ++ K + + + +EHPAV A F ++
Sbjct: 59 DLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVT 118
Query: 118 KIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGIL 177
+P+ +G + + + + + ++ + +++VM+ NNETG+I PIKEI +I KE +
Sbjct: 119 YLPINEQGTITAEQVREAITEKTA-----LVSVMWANNETGMIFPIKEIGEICKERGVLF 173
Query: 178 VVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKG 237
DAVQA G+IP+ +++ DFL S+HK P G G L R+ + L +PL GG+ G
Sbjct: 174 HTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGVEL-TPLFHGGEHMGG 232
Query: 238 QRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERI 297
+R+GT N I A + + + S V +RD LE L +L P++ + G R+
Sbjct: 233 RRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL-PDVFVVGDREHRV 291
Query: 298 SNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRV 355
NT SI ++ E + L+ GIA S GSAC+S ++ N V+ A+G D + A+R+
Sbjct: 292 PNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRL 351
Query: 356 SCGDSTTQEDID----IFLNALQKI 376
S TT+E+ID +F A+Q++
Sbjct: 352 SLSRFTTEEEIDYTIEVFKKAVQRL 376