RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781091|ref|YP_003065504.1| putative
pyridoxal-phosphate-dependent aminotransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
(383 letters)
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 309 bits (795), Expect = 6e-85
Identities = 143/380 (37%), Positives = 216/380 (56%), Gaps = 15/380 (3%)
Query: 5 VYLDWNATAPLLEVVRQSFVKSL-DFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPD 63
+YLD NAT + V ++ + +++GNPSS+H G + +EE+R +A GA+PD
Sbjct: 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD 60
Query: 64 HVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHF---PSHKIHKIP 120
++FTS TE+ N + K I +A+EHPAV + +K+ +P
Sbjct: 61 EIIFTSGGTESDNTAIKSALAAQPEKRHI---ITTAVEHPAVLSLCQHLEKQGYKVTYLP 117
Query: 121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD 180
V +G +D++ L + + +++VM+ NNETG I PI+EI +I KE + D
Sbjct: 118 VDEEGRLDLEELRAAITDDTA-----LVSVMWANNETGTIFPIEEIGEIAKERGALFHTD 172
Query: 181 AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA 240
AVQA G+IP+ ++E+ D L +S HKL P G GAL R+ PLLRGG QE+G+RA
Sbjct: 173 AVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTRF-RPLLRGGHQERGRRA 231
Query: 241 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT 300
GTEN I G AA+ + +++ ++RV A+RD LE L IP+ + G +R+ NT
Sbjct: 232 GTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNT 291
Query: 301 CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMG--FDTSQGAVRVSCG 358
S +++ E + + LD+EGI S+GSAC+SG ++ +HVL AMG + G++R S
Sbjct: 292 VNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLS 351
Query: 359 DSTTQEDIDIFLNALQKIIR 378
T+EDID L L II
Sbjct: 352 RYNTEEDIDYVLEVLPPIIA 371
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 231 bits (591), Expect = 3e-61
Identities = 121/380 (31%), Positives = 202/380 (53%), Gaps = 33/380 (8%)
Query: 5 VYLDWNATAPLL-EVVRQSFVKSLDFYGNPSSV-HKEGQKTRLYIEESRRIIADFCGAKP 62
+YLD AT P+ V+ ++ +GNP S H G ++ +E++R +A GA P
Sbjct: 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADP 60
Query: 63 DHVVFTSSATEAANWVL--TPHFYQGS--HKISIDSLYISAIEHPAVYAGGHFPSHKIHK 118
++FTS ATE+ N + HFY+ H I+ + EH V H +
Sbjct: 61 KEIIFTSGATESNNLAIKGVMHFYKDKKKHVIT------TQTEHKCVL--DSC-RHLQQE 111
Query: 119 ------IPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKE 172
+PV S G+VD+ L + R T +++VM VNNE GVIQP++EI ++ +E
Sbjct: 112 GFEVTYLPVKSDGLVDLDELAAAI--RPDTA---LVSVMAVNNEIGVIQPVEEIGELCRE 166
Query: 173 YQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLP-SPLLRG 231
+ + DA QA G+IP+ ++++ D + IS HK+ P G GAL R + PL+ G
Sbjct: 167 KKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSG 226
Query: 232 GDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG 291
G QE+G+R+GTEN ++ G A + +K++ + A+R+ L L+ + + + G
Sbjct: 227 GGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNG 286
Query: 292 K--DAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDT- 348
+R T S +++ E L + L+ +AVS+GSAC+S ++ ++VL A+G
Sbjct: 287 PRDPEKRYPGTLNLSFAYVEGESLLMG--LKEVAVSSGSACTSASLEPSYVLRALGVPEE 344
Query: 349 -SQGAVRVSCGDSTTQEDID 367
+ G++R+ G TT+E++D
Sbjct: 345 MAHGSLRLGVGRFTTEEEVD 364
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase.
Length = 353
Score = 226 bits (577), Expect = 1e-59
Identities = 129/367 (35%), Positives = 189/367 (51%), Gaps = 31/367 (8%)
Query: 6 YLDWNATAPLL----EVVRQSFVKSLDFYGNPSSV-HKEGQKTRLYIEESRRIIADFCGA 60
YLD NAT P+ E + L+ +GNPSS H+ G + +E +R+ +A+ GA
Sbjct: 1 YLDHNATTPIDPAVAEAMLPWL---LEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGA 57
Query: 61 KPDHVVFTSSATEAANWV---LTPHFYQGSHKISIDSLYISAIEHPAVYAGGHF---PSH 114
+ V+FTS ATE+ N L Q K + SAIEHPAV
Sbjct: 58 DTEEVIFTSGATESNNLAILGLARAGEQKGKK----HIITSAIEHPAVLEPIRALERNGF 113
Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQ 174
+ +PV G +D+ L D + R T ++++M VNNETG IQPI+EIA++++ ++
Sbjct: 114 TVTYLPVDESGRIDVDELADAI--RPDTL---LVSIMHVNNETGSIQPIREIAEVLEAHE 168
Query: 175 GILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLP---SPLLRG 231
VDA Q G+I + + + D + S HK+ P G GALV R+ P++ G
Sbjct: 169 AFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFG 228
Query: 232 GDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG 291
G QE+G R GT +I G AA+ ++ Q ++ A+R+ L L+ + + G
Sbjct: 229 GGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNG 286
Query: 292 KDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQ- 350
AE I + FSI + +E L + L AVS GSACSS K + +HVL AMG DT +
Sbjct: 287 DPAETIPHILNFSIDGVNSEALIVNLR-ADAAVSTGSACSSSKYEPSHVLQAMGLDTDRA 345
Query: 351 -GAVRVS 356
GA+R S
Sbjct: 346 RGAIRFS 352
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PubMed:11123951), so we use this
designation.
Length = 382
Score = 220 bits (562), Expect = 5e-58
Identities = 129/385 (33%), Positives = 206/385 (53%), Gaps = 22/385 (5%)
Query: 5 VYLDWNATA---PLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEES-RRIIADFCGA 60
VYLD NAT P ++ + F D YGNP+S+H+ G T I E+ ++
Sbjct: 1 VYLDNNATTMLDPKVKELMDPFFC--DIYGNPNSLHQFGTATHPAIAEALDKLYKGINAR 58
Query: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSH---KIH 117
D ++ TS ATE+ NWVL ++ K + + + +EHPAV A F ++
Sbjct: 59 DLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVT 118
Query: 118 KIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGIL 177
+P+ +G + + + + + ++ + +++VM+ NNETG+I PIKEI +I KE +
Sbjct: 119 YLPINEQGTITAEQVREAITEKTA-----LVSVMWANNETGMIFPIKEIGEICKERGVLF 173
Query: 178 VVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKG 237
DAVQA G+IP+ +++ DFL S+HK P G G L R+ + L +PL GG+ G
Sbjct: 174 HTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGVEL-TPLFHGGEHMGG 232
Query: 238 QRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERI 297
+R+GT N I A + + + S V +RD LE L +L P++ + G R+
Sbjct: 233 RRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL-PDVFVVGDREHRV 291
Query: 298 SNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDT--SQGAVRV 355
NT SI ++ E + L+ GIA S GSAC+S ++ N V+ A+G D + A+R+
Sbjct: 292 PNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRL 351
Query: 356 SCGDSTTQEDID----IFLNALQKI 376
S TT+E+ID +F A+Q++
Sbjct: 352 SLSRFTTEEEIDYTIEVFKKAVQRL 376
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 203 bits (519), Expect = 6e-53
Identities = 127/379 (33%), Positives = 200/379 (52%), Gaps = 32/379 (8%)
Query: 5 VYLDWNATAPL----LEVVRQSFVKSLDFYGNPSS-VHKEGQKTRLYIEESRRIIADFCG 59
+YLD++AT P+ E + F GNP+S H+ G + ++ +R IAD G
Sbjct: 5 IYLDYSATTPVDPRVAEKMMPYLTMDGTF-GNPASRSHRFGWQAEEAVDIARNQIADLIG 63
Query: 60 AKPDHVVFTSSATEAANWVL--TPHFYQ--GSHKISIDSLYISAIEHPAVY-AGGHFPSH 114
A P +VFTS ATE+ N + HFYQ G H I+ S EH AV
Sbjct: 64 ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIIT------SKTEHKAVLDTCRQLERE 117
Query: 115 --KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKE 172
++ + S GI+D++ L + R+ T ++++M VNNE GVIQ I I +I +E
Sbjct: 118 GFEVTYLDPQSNGIIDLEKLEAAM--RDDTI---LVSIMHVNNEIGVIQDIAAIGEICRE 172
Query: 173 YQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGAL-VFREDILLPSPLLRG 231
I VDA Q+ G++P+ + ++K D + S+HK+ P G GAL V R+ + + G
Sbjct: 173 RGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHG 232
Query: 232 GDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYG 291
G E+G R+GT I G AA+ +++ + R+ A+RD L +K I + + G
Sbjct: 233 GGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD-IEEVYLNG 291
Query: 292 KDAERISNTCCFSIPFLKAEVLQIAL-DLEGIAVSAGSACSSGKIKKNHVLAAMGF--DT 348
+R+ S +++ E L +AL DL AVS+GSAC+S ++ ++VL A+G +
Sbjct: 292 DLEQRVPGNLNVSFNYVEGESLIMALKDL---AVSSGSACTSASLEPSYVLRALGLNDEL 348
Query: 349 SQGAVRVSCGDSTTQEDID 367
+ ++R S G TT+E+ID
Sbjct: 349 AHSSIRFSLGRFTTEEEID 367
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors.
Length = 402
Score = 190 bits (484), Expect = 5e-49
Identities = 125/386 (32%), Positives = 207/386 (53%), Gaps = 28/386 (7%)
Query: 5 VYLDWNATAPLLEVVRQSFVKSL--DFYGNPSS-VHKEGQKTRLYIEESRRIIADFCGAK 61
+YLD+ AT P+ V + + L F GNP+S H G + +E +R +A+ GA
Sbjct: 5 IYLDYAATTPVDPRVAEKMMPYLTEKF-GNPASRSHSFGWEAEEAVENARNQVAELIGAD 63
Query: 62 PDHVVFTSSATEAANWVL--TPHFYQ--GSHKISIDSLYISAIEHPAVY-AGGHFPSH-- 114
+VFTS ATE+ N + HFY+ G+H I+ S EH AV +
Sbjct: 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIIT------SKTEHKAVLDTCRYLEREGF 117
Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQ 174
++ +P S G++D++ L + R+ T ++++M VNNE GVIQ I I +I +E +
Sbjct: 118 EVTYLPPKSNGLIDLEELKAAI--RDDTI---LVSIMHVNNEIGVIQDIAAIGEICRERK 172
Query: 175 GILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGAL-VFREDILLPSPLLRGGD 233
VDA Q+ G+IP+++ E+K D + IS HK+ P G GAL V R+ + L+ GG
Sbjct: 173 VFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGG 232
Query: 234 QEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKD 293
E+G R+GT I G A + +++ + ++ V A+RD L +K I + + G
Sbjct: 233 HERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS-IEEVYLNGDL 291
Query: 294 AERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGF--DTSQG 351
R+ S +++ E L +A L+ +AVS+GSAC+S ++ ++VL A+G + +
Sbjct: 292 EHRVPGNLNVSFNYVEGESLIMA--LKDLAVSSGSACTSASLEPSYVLRALGINDELAHS 349
Query: 352 AVRVSCGDSTTQEDIDIFLNALQKII 377
++R + G TT+E+ID + ++ I
Sbjct: 350 SIRFTIGRFTTEEEIDYAVKLVKSAI 375
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 177 bits (451), Expect = 4e-45
Identities = 109/386 (28%), Positives = 190/386 (49%), Gaps = 24/386 (6%)
Query: 5 VYLDWNATAPLLEVVRQSFVK-SLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGAKPD 63
+YLD+ AT P+ + Q++ K + ++GN SS+H G ++ R+ A+ G +
Sbjct: 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ 61
Query: 64 HVVFTSSATE----AANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHF---PSHKI 116
+ FTS TE A +L H I+ + +EH ++++ + +
Sbjct: 62 GIYFTSGGTESNYLAIQSLLNALPQNKKHIIT------TPMEHASIHSYFQSLESQGYTV 115
Query: 117 HKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGI 176
+IPV G++ + L +R T + ++ N+E G IQPI EI ++K+Y +
Sbjct: 116 TEIPVDKSGLIRLVDL-----ERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVL 170
Query: 177 LVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEK 236
D VQ G++P+ + E+ D L +S+HK+ P G GA+ + P+ G EK
Sbjct: 171 FHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQVRW-KPVFPGTTHEK 229
Query: 237 GQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAER 296
G R GT N I F AA+ ++K++Q+ S R +R Y ++++ L I + G
Sbjct: 230 GFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSC 289
Query: 297 ISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGA---V 353
+ + +I ++ + + + GIA+S GSAC GK + + + A+G T + A V
Sbjct: 290 LPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIG-KTYEEAKQFV 348
Query: 354 RVSCGDSTTQEDIDIFLNALQKIIRT 379
R S G TT++ ID ++AL+ I
Sbjct: 349 RFSFGQQTTKDQIDTTIHALETIGNQ 374
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufS subfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved.
Length = 403
Score = 161 bits (410), Expect = 3e-40
Identities = 104/406 (25%), Positives = 171/406 (42%), Gaps = 57/406 (14%)
Query: 5 VYLDWNATA----PLLEVVRQSFVKSLDFYGNPS-SVHKEGQKTRLYIEESRRIIADFCG 59
VYLD AT+ +++ V + + S N +H + E R +A F
Sbjct: 20 VYLDSAATSQKPQQVIDAVAEYYRNS---NANVHRGIHTLSVRATEAYEAVREKVAKFIN 76
Query: 60 AKPDH-VVFTSSATEAANWVLT----PHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSH 114
A D +VFT TE+ N V + G D + IS +EH A +
Sbjct: 77 AASDEEIVFTRGTTESINLVAYSWGDSNLKAG------DEIVISEMEHHANIVPWQLLAE 130
Query: 115 ----KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIV 170
+ IP+ G +D+ L L ++ ++A+ V+N G + P++EIA++
Sbjct: 131 RTGATLKFIPLDDDGTLDLDDLEKLLTEK-----TKLVAITHVSNVLGTVNPVEEIAKLA 185
Query: 171 KEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDIL--LPSPL 228
+ ++VD QA +P+ ++ + DF + S HK+ P G G L +E++L +P P
Sbjct: 186 HQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMP-PF 244
Query: 229 LRGGD------------QEKGQR--AGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIR 273
L GG+ E + AGT N A + G A + ++ + +
Sbjct: 245 LGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELT 304
Query: 274 DYLEQELKKLIPNIIIYG-KDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSS 332
Y + L + IP + IYG +DAE F++ + + LD EGIAV +G C+
Sbjct: 305 AYALERLGE-IPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCA- 362
Query: 333 GKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378
M R S T+EDID + AL+K+ +
Sbjct: 363 --------QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK 400
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown.
Length = 376
Score = 137 bits (346), Expect = 6e-33
Identities = 104/407 (25%), Positives = 172/407 (42%), Gaps = 66/407 (16%)
Query: 5 VYLDWNATA-PLLEVVRQSFVKSLDFYG-NPS-SVHKEGQKTRLYIEESRRIIADFCGA- 60
+Y D AT P + V ++ YG +P ++ + +EE+R+++A A
Sbjct: 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP 60
Query: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHK-- 118
HVVFT++AT A N L +G K D + + +EH +V P + +
Sbjct: 61 SSAHVVFTNNATTALNIAL-----KGLLK-EGDHVITTPMEHNSVAR----PLECLKEQI 110
Query: 119 ------IPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKE 172
+ ++G++ + + +R +I V +N TG I PI+EI ++ +E
Sbjct: 111 GVEITIVKCDNEGLISPERI-----KRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQE 165
Query: 173 YQGILVVDAVQAAGRIPLSIEEIKADFLIISSHK-LGAPVGAGALVFREDILLPSPLLRG 231
++DA Q AG IP+ + E+ D L + HK L P G G L RE I L PL G
Sbjct: 166 NGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKL-KPLKSG 224
Query: 232 G------DQEKGQ------RAGTENYAVIGGFAVAAQQM----VKDIQKRSSRVFAIRDY 275
G ++ +GT N I G + + + +I K+ + +
Sbjct: 225 GTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKE---CMLTEK 281
Query: 276 LEQELKKLIPNIIIYG-KDAERISNTCCFSIPFLKAEVLQIALDLE-GIAVSAGSACSSG 333
L L++ I + IYG D F++ + +E + LD + IA G C
Sbjct: 282 LLNGLRE-INKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHC--- 337
Query: 334 KIKKNHVLAAMGFDTSQ----GAVRVSCGDSTTQEDIDIFLNALQKI 376
A + T G +R+S G T+E+I+ L AL +I
Sbjct: 338 --------APLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSEI 376
>gnl|CDD|178446 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 100 bits (251), Expect = 6e-22
Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 60/410 (14%)
Query: 3 KRVYLDWNATA--PLLEVVRQSFVKSLDFY--GNPSSVHK-----EGQKTRLYIEESRRI 53
K VYLD AT+ P + + +L Y S+VH+ + T Y E +R+
Sbjct: 32 KLVYLDNAATSQKP------AAVLDALQDYYEEYNSNVHRGIHALSAKATDAY-ELARKK 84
Query: 54 IADFCGAKPD-HVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFP 112
+A F A +VFT +ATEA N L + + ++ D + +S EH +
Sbjct: 85 VAAFINASTSREIVFTRNATEAIN--LVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLV 142
Query: 113 SHK----IHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQ 168
+ K + + + ++D++ L + L ++ ++A V+N G I P+++I
Sbjct: 143 AQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTK-----LVATHHVSNVLGSILPVEDIVH 197
Query: 169 IVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDIL--LPS 226
++VDA Q+ +P+ ++ + ADFL+ SSHK+ P G G L + D+L +P
Sbjct: 198 WAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMP- 256
Query: 227 PLLRGGD------------QEKGQR--AGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFA 271
P L GG+ R AGT G A + + + +
Sbjct: 257 PFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVE 316
Query: 272 IRDYLEQELKKLIPNIIIYG---KDAERISNTCCFSIPFLKAEVLQIALDLE-GIAVSAG 327
+ YL ++L +P + IYG + + C F++ + L LD + G+A+ +G
Sbjct: 317 LGTYLYEKLSS-VPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSG 375
Query: 328 SACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKII 377
C+ + H +G + S R S T+E++D F++AL+ I
Sbjct: 376 HHCA----QPLH--RYLGVNAS---ARASLYFYNTKEEVDAFIHALKDTI 416
>gnl|CDD|162635 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase.
Length = 397
Score = 93.7 bits (233), Expect = 8e-20
Identities = 90/398 (22%), Positives = 151/398 (37%), Gaps = 46/398 (11%)
Query: 4 RVYLDWNATAPLLEVVRQSFVKSLDFYG-NPSSVHKEGQKTRLYIEESRRIIADFCGAKP 62
RV+ D A + + V + +L N ++ ++ ++++R +AD A P
Sbjct: 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADP 77
Query: 63 DHVVFTSSATEAANWVLTPHFYQGSHKISI--DSLYISAIEHPAVYA----GGHFPSHKI 116
VVF ++AT LT + + D + ++ ++H A + K+
Sbjct: 78 PEVVFGANAT-----SLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKV 132
Query: 117 HKIPVLSK-GIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQG 175
V G + L L R ++AV +N G I + I ++V
Sbjct: 133 KWARVDEATGELHPDDLASLLSPRTR-----LVAVTAASNTLGSIVDLAAITELVHAAGA 187
Query: 176 ILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDI---LLPSPLLRGG 232
++VVDAV A + ++ ADFL S++K P G L R ++ L P L
Sbjct: 188 LVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP-HMGILWGRPELLMNLPPYKLTFSY 246
Query: 233 DQEKGQ-RAGTENYAVIGGFAVAAQQM----VKDIQKRSSRVFA-----------IRDYL 276
D + GT Y ++ G A + R R+ A + +YL
Sbjct: 247 DTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYL 306
Query: 277 EQELKKLIPNIIIYG-KDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKI 335
L L P + +YG T F++ L + + L +GI AG +
Sbjct: 307 LVGLSDL-PGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVR-- 363
Query: 336 KKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNAL 373
+L +G + G VRV T E++D L AL
Sbjct: 364 ----LLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 91.7 bits (228), Expect = 3e-19
Identities = 96/411 (23%), Positives = 159/411 (38%), Gaps = 69/411 (16%)
Query: 5 VYLDWNATAPLLEVVRQSFVKSLDFYGNP-SSVHK-----EGQKTRLYIEESRRIIADFC 58
YLD A+A V +FY + ++VH+ Q T +E R+ A F
Sbjct: 25 AYLDSAASAQKPSQVID---AEAEFYRHGYAAVHRGIHTLSAQATEK-MENVRKQAALFI 80
Query: 59 GAK-PDHVVFTSSATEAANWVLTPHFYQGSHKISI-DSLYISAIEHPA---------VYA 107
A+ + +VF TE N V G+ + D++ IS +EH A
Sbjct: 81 NARSAEELVFVRGTTEGINLVANSW---GNSNVRAGDNIIISEMEHHANIVPWQMLCARV 137
Query: 108 GGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIA 167
G + IP+ G + ++ L ++R ++A+ V+N G P+ E+
Sbjct: 138 GAE-----LRVIPLNPDGTLQLETLPALFDERTR-----LLAITHVSNVLGTENPLAEMI 187
Query: 168 QIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSP 227
+ ++ ++VD QA P+ ++ + DF + S HKL P G G L +E +L P
Sbjct: 188 ALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 228 LLRGGDQEKGQ----------------RAGTENYAVIGGFAVA----AQQMVKDIQKRSS 267
GG AGT N I G A + + +I +
Sbjct: 248 PWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQ 307
Query: 268 RVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAG 327
+ Y +L+ +P++ +YG R+ F++ A + LD GIAV G
Sbjct: 308 ---NLMHYALSQLES-VPDLTLYGP-QNRLG-VIAFNLGKHHAYDVGSFLDNYGIAVRTG 361
Query: 328 SACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378
C+ + M + R S T E++D + LQ+I R
Sbjct: 362 HHCA---------MPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems.
Length = 398
Score = 91.4 bits (227), Expect = 3e-19
Identities = 101/407 (24%), Positives = 165/407 (40%), Gaps = 69/407 (16%)
Query: 5 VYLDWNATA----PLLEVVRQSFVKSLDFYGNPS-----SVHKEGQKTRLYIEESRRIIA 55
VYLD ATA +++ +Q FY S S H++ Q E +R+ +A
Sbjct: 18 VYLDSAATALKPQAVIDATQQ-------FYRLSSGTVHRSQHQQAQSLTARYELARQQVA 70
Query: 56 DFCGA-KPDHVVFTSSATEAANWVLT----PHFYQGSHKISIDSLYISAIEHPAVYAG-- 108
F A +++V+T TE+ N V P G D + +S EH A
Sbjct: 71 RFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPG------DEIIVSEAEHHANLIPWL 124
Query: 109 --GHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEI 166
K+ K+P+ + + DI+ L + L R ++A+ ++N TG +
Sbjct: 125 MVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTR-----ILALGQMSNVTGGCPDLARA 179
Query: 167 AQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPS 226
+ +Y ++VVD Q P ++ + DF S HKL P G G L + ++L
Sbjct: 180 ITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAM 239
Query: 227 PLLRGGD-------------QEKGQR--AGTENYAVIGGFAVAAQQMVK-DIQKRSSRVF 270
P +GG Q R AGT N A + G + A + + DI +
Sbjct: 240 PPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSV 299
Query: 271 AIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIA--LDLEGIAVSAGS 328
++ D E+ L +L P + R + + F +A L GIA+ AG
Sbjct: 300 SLADLAEERLAQL-PGFRSF-----RCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQ 353
Query: 329 ACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQK 375
C+ ++AA+G G +R S TQ+D+D ++A+
Sbjct: 354 HCA------QPLMAALGVS---GTLRASFAPYNTQQDVDALVDAVGA 391
>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional.
Length = 401
Score = 88.6 bits (220), Expect = 2e-18
Identities = 107/417 (25%), Positives = 163/417 (39%), Gaps = 89/417 (21%)
Query: 5 VYLDWNATA----PLLEVVRQSFVKSLDFYGNPS-----SVHKEGQKTRLYIEESRRIIA 55
VYLD ATA ++E +Q FY + S Q+ E +R +A
Sbjct: 21 VYLDSAATALKPQAVIEATQQ-------FYSLSAGNVHRSQFAAAQRLTARYEAAREQVA 73
Query: 56 DFCGA-KPDHVVFTSSATEAANWV----LTPHFYQGSHKISIDSLYISAIEH-----P-- 103
A ++V+T TE+ N V P G D + +S EH P
Sbjct: 74 QLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPG------DEIIVSEAEHHANLVPWL 127
Query: 104 --AVYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQ 161
A G K+ K+P+ + + D+ L + + R ++A+ ++N TG
Sbjct: 128 MVAQQTGA-----KVVKLPLGADRLPDVDLLPELITPRTR-----ILALGQMSNVTGGCP 177
Query: 162 PIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFRED 221
+ + + +++VD Q A P ++ + DF S HKL P G G L + +
Sbjct: 178 DLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSE 237
Query: 222 ILLP-SPLLRGGD------------QEKGQR--AGTENYAVIGGFAVAAQQMVKDIQ--- 263
+L SP GG Q R AGT N A + G + AA + + DI
Sbjct: 238 LLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLS-AALEWLADIDINQ 296
Query: 264 -KRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEV----LQIALD 318
+ SR A E L KL P + R ++ + F A V L L
Sbjct: 297 AESWSRSLA--TLAEDALAKL-PGFRSF-----RCQDSSLLAFDF--AGVHHSDLVTLLA 346
Query: 319 LEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQK 375
GIA+ AG C+ +LAA+G G +R S TQ D+D +NA+ +
Sbjct: 347 EYGIALRAGQHCAQP------LLAALGVT---GTLRASFAPYNTQSDVDALVNAVDR 394
>gnl|CDD|132344 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level alignment
(TIGR02326). The PhnW family is apparently a branch of a
larger tree including genes (AepZ) adjacent to others
responsible for the biosynthesis of
phosphonoacetaldehyde. The identity of the transfer
partner is unknown for these enzymes and considering the
reversed flux compared to PhnW, it may very well be
different.
Length = 355
Score = 58.5 bits (142), Expect = 3e-09
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 150 VMFVNNET--GVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKL 207
V V++ET G++ P++ IA++ + + +L+VDA+ + G IP+ IEE+ D LI S++K
Sbjct: 129 VATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC 188
Query: 208 --GAPVGAGALVFREDILLPSP 227
G P G G ++ R D+L S
Sbjct: 189 LEGVP-GFGFVIARRDLLEASA 209
>gnl|CDD|178325 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
Length = 805
Score = 58.3 bits (141), Expect = 3e-09
Identities = 113/486 (23%), Positives = 176/486 (36%), Gaps = 130/486 (26%)
Query: 2 FKR----VYLDWNATAPL-----LEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRR 52
F R VYLD +A A L LE F S + YGNP S ++ IE +R+
Sbjct: 29 FARLKGVVYLD-HAGATLYSESQLEAALADF--SSNVYGNPHSQSDSSMRSSDTIESARQ 85
Query: 53 IIADFCGAKP-DHV-VFTSSAT-------EAANWVLTPHFY------------------Q 85
+ ++ A P D+ VFTS AT E W HF +
Sbjct: 86 QVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEK 145
Query: 86 GSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGI 145
G+ I++D IE A S + + + +Q D E N
Sbjct: 146 GAAAIAVD------IEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYN----- 194
Query: 146 PMIAVMFVNNETGVIQPIKEIAQIVKEYQG---------ILVVDAVQAAGRIPLSIEEIK 196
+ A N +G P+ ++ +++K+ Q ++++DA + G P +
Sbjct: 195 -LFAFPSECNFSGAKFPL-DLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYP 252
Query: 197 ADFLIISSHKL-GAPVGAGALVFREDI--LLPSPLLRGG----------------DQEKG 237
ADF+++S +K+ G P G GAL+ R D LL GG E+
Sbjct: 253 ADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQR 312
Query: 238 QRAGTENYAVIG----GFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKL-----IPNII 288
GT ++ I GF + + + I + A+ Y+ L+ L P +
Sbjct: 313 FEDGTISFLSIAALRHGFKLLNRLTISAIAMHTW---ALTHYVANSLRNLKHGNGAPVCV 369
Query: 289 IYGKDAERISNTCCFSIPFLK-------------AEVLQIALDLEGIAVSAGSACSSGKI 335
+YG ++ P + EV ++A L GI + G C+ G
Sbjct: 370 LYGNHTFKLE--FHIQGPIVTFNLKRADGSWVGHREVEKLA-SLSGIQLRTGCFCNPGAC 426
Query: 336 KK----NHVLAAMGFDTSQ--------------GAVRVSCGDSTTQEDIDIFLNALQKII 377
K +H F+ GAVRVS G +T ED F+ I
Sbjct: 427 AKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFI----DFI 482
Query: 378 RTSTVR 383
+S V
Sbjct: 483 ISSFVS 488
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli.
Length = 363
Score = 56.7 bits (137), Expect = 1e-08
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 145 IPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISS 204
I IA++ TG++ PI+ +A++ + + +VDA+ + G IP+ I E+ D+LI S+
Sbjct: 130 ITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSA 189
Query: 205 HKL--GAPVGAGALVFREDILLPS 226
+K G P G G ++ R+ L
Sbjct: 190 NKCIQGVP-GFGFVIARQAELAAC 212
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 55.3 bits (134), Expect = 3e-08
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 127 VDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
D + L + I +A++ TG++ P+ EIA + K + L+VDA+ + G
Sbjct: 117 PDAAEVEAAL-AADPR--ITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFG 173
Query: 187 RIPLSIEEIKADFLIISSHKL--GAPVGAGALVFREDIL 223
IP+ I E+ D LI S++K G P G G ++ R L
Sbjct: 174 AIPIDIAELGIDALISSANKCIEGVP-GFGFVIARRSEL 211
>gnl|CDD|184109 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 53.4 bits (129), Expect = 1e-07
Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 56/270 (20%)
Query: 127 VDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
VD++A+ D ++ T GI IA E G + PI E+++I E L VDA A G
Sbjct: 139 VDVKAVEDLIDDN--TIGIVGIAG---TTELGQVDPIPELSKIALENGIFLHVDA--AFG 191
Query: 187 R--IPLSIEEIKADF-------LIISSHKLG-APVGAGALVFREDILL-----PSPLLRG 231
IP + DF + I HK+G AP+ AG ++FR++ L +P L
Sbjct: 192 GFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTS 251
Query: 232 GDQEK--GQRAGTENYAVIGGFAVAAQQMVKDIQKR-SSRVFAIRDYLEQELKKLIPNII 288
Q G R+G V +AV + + ++ ++ R +L +ELK+ +
Sbjct: 252 KKQATLTGTRSGA---GVAATYAV-MKYLGREGYRKVVERCMENTRWLAEELKERGFEPV 307
Query: 289 IYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDT 348
I E + N F P + ++ L G V S +
Sbjct: 308 I-----EPVLNIVAFDDP--NPDEVREKLRERGWRV---SVTRCPE-------------- 343
Query: 349 SQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378
A+R+ C T+E I+ FL L+++ +
Sbjct: 344 ---ALRIVCMPHVTREHIENFLEDLKEVKK 370
>gnl|CDD|163524 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions.
Length = 373
Score = 48.1 bits (115), Expect = 4e-06
Identities = 69/271 (25%), Positives = 100/271 (36%), Gaps = 59/271 (21%)
Query: 127 VDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
VD++ + D ++ T GI IA E G I I+E+++I E L VDA
Sbjct: 141 VDVKDVEDLIDDN--TIGIVGIAG---TTELGQIDDIEELSKIALENGIYLHVDAAFGGF 195
Query: 187 RIP-LSIEEIKADF---------LIISSHKLG-APVGAGALVFREDILLPS-----PLLR 230
IP L F + I HK+G +P+ AG ++FR L P L
Sbjct: 196 VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLT 255
Query: 231 GGDQEK--GQRAGTE---NYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIP 285
Q G R+G YAVI +K + YL +ELKK+
Sbjct: 256 VKKQATITGTRSGASAAATYAVIKYLGREGY------RKIVAECMENTRYLVEELKKIGF 309
Query: 286 NIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMG 345
+I E + N F + E ++ L G V S K
Sbjct: 310 EPVI-----EPVLNIVAFEVD--DPEEVRKKLRDRGWYV---SVTRCPK----------- 348
Query: 346 FDTSQGAVRVSCGDSTTQEDIDIFLNALQKI 376
A+R+ T+E I+ FL L++I
Sbjct: 349 ------ALRIVVMPHVTREHIEEFLEDLKEI 373
>gnl|CDD|162909 TIGR02539, SepCysS, Sep-tRNA:Cys-tRNA synthase. Aminoacylation of
tRNA(Cys) with Cys, and cysteine biosynthesis in the
process, happens in Methanocaldococcus jannaschii and
several other archaea by misacylation of tRNA(Cys) with
O-phosphoserine (Sep), followed by modification of the
phosphoserine to cysteine. In some species, direct
tRNA-cys aminoacylation also occurs but this pathway is
required for Cys biosynthesis. Members of this protein
catalyze the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 47.9 bits (114), Expect = 4e-06
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 127 VDIQALTDFLEQRNSTCGIP--MIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQA 184
VD + + +E+ G P + + V+ E G + ++A++ +E L+++
Sbjct: 127 VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186
Query: 185 AGRIPLSIEEIKADFLIISSHK-LGAPVGAGALVFRED 221
GR+P+S +EI ADF++ S HK + A G L E+
Sbjct: 187 VGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEE 224
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme,
Pyridoxal-dependent).
Length = 522
Score = 43.1 bits (102), Expect = 1e-04
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 24/118 (20%)
Query: 118 KIPVLSKGIVDIQALTDF---LEQRNSTCGIPMIAVMFV--NNETGVIQPIKEIAQIVKE 172
I + +D+ AL D L ++N I +A++ V ETG I P+ E+A I +E
Sbjct: 238 AIKTDANNRIDVDALRDKCAELAEQN----IKPLAIVGVAGTTETGNIDPLDEMADIAQE 293
Query: 173 YQGILVVDAVQAAGRIPL----------SIEEIKADFLIISSHK-LGAPVGAGALVFR 219
VDA A G L IE +AD + I +HK L P+GAG ++F+
Sbjct: 294 LGCHFHVDA--AWGGATLLSNTYRHLLKGIE--RADSVTIDAHKQLYVPMGAGMVLFK 347
>gnl|CDD|181782 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 42.2 bits (100), Expect = 2e-04
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 158 GVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHK-LGAPVGAGAL 216
G + K++A++ EY +++ GR+P+ +++ ADF++ S HK + A +G L
Sbjct: 172 GNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVL 231
Query: 217 VFRED 221
E+
Sbjct: 232 ATTEE 236
>gnl|CDD|130873 TIGR01814, kynureninase, kynureninase. This model describes
kynureninase, a pyridoxal-phosphate enzyme. Kynurinine
is a Trp breakdown product and a precursor for NAD. In
Chlamydia psittaci, an obligate intracellular pathogen,
kynureninase makes anthranilate, a Trp precursor, from
kynurenine. This counters the tryptophan hydrolysis that
occurs in the host cell in response to the pathogen.
Length = 406
Score = 41.3 bits (97), Expect = 4e-04
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 20/171 (11%)
Query: 59 GAKPDHVVFTSSATEAANWVLTPHFYQGS---HKISIDSLY----ISAIEHPAVYAGGHF 111
GAK D VV ++ T + +L FY+ + +KI +++ AIE G
Sbjct: 83 GAKEDEVVVMNTLTINLHLLLAS-FYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTV 141
Query: 112 PSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMF---VNNETGVIQPIKEIAQ 168
+ P + + ++ + D +E+ IAV+ V TG + + I +
Sbjct: 142 EESMVQIEP-REEETLRLEDILDTIEKNG-----DDIAVILLSGVQYYTGQLFDMAAITR 195
Query: 169 IVKEYQGILVV-DAVQAAGRIPLSIEEIKADFLIISSHK-LGAPVGAGALV 217
+G LV D A G +PL + + DF ++K L A GAGA V
Sbjct: 196 AAHA-KGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPGAGAFV 245
>gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase.
Length = 401
Score = 37.4 bits (87), Expect = 0.006
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 149 AVMFVNNE--TGVIQPIKEIAQIVKEYQ--GILVVDAVQAAGRIPLSIEEIKADFLIISS 204
AV V+NE TGV + + +++ Q +L+VD V + G + ++E D + S
Sbjct: 140 AVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGS 199
Query: 205 HK-LGAPVGAG 214
K L P G G
Sbjct: 200 QKALSLPTGLG 210
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 36.7 bits (85), Expect = 0.010
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 42/241 (17%)
Query: 54 IADFCGAKPDHVVFTSSATEAANWVLTPHFYQGSHKISID-SLYISAIEHPAVYAGGH-- 110
IA F GA +V + AN L H + + D ++IS + +V +G H
Sbjct: 65 IAHFHGAPEAFIVPSGYM---ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQS 121
Query: 111 FPSHKIHKIPVLSKGIVDIQALTDFLEQ-RNSTCGIPMIAVMFVNNETGVIQPIKEIAQI 169
F + D+ L LE R + G I V V + G + P+++I +
Sbjct: 122 FRHN-------------DLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIAL 168
Query: 170 VKEYQGILVVDAVQAAGRI---------PLSIEEIKADFLIISSHKLGAPVGAGALVFRE 220
K+Y L+VD A G L E A L+ S LG+ +GA L E
Sbjct: 169 SKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYA-VLVTYSKALGS-MGAALLSSSE 226
Query: 221 ---DILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLE 277
D++L SP LR G + +I VA + ++ + ++F +++Y
Sbjct: 227 VKQDLMLNSPPLR-------YSTGLPPHLLI-SIQVAYDFLSQEGELARKQLFRLKEYFA 278
Query: 278 Q 278
Q
Sbjct: 279 Q 279
>gnl|CDD|183910 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
PLP-dependent; Provisional.
Length = 460
Score = 35.2 bits (82), Expect = 0.032
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 26/121 (21%)
Query: 124 KGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP-----IKEIAQIVKEYQGILV 178
KG D++ L +E+ + +P I VM + N + QP ++ + +I K+Y +V
Sbjct: 158 KGNFDLEKLEALIEEVGAE-NVPFI-VMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVV 215
Query: 179 VDAVQAA-----------GRIPLSIEEIK------ADFLIISSHKLG-APVGAGALVFRE 220
+DA + A G SI+EI AD L +S+ K +G G L FR+
Sbjct: 216 IDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRD 274
Query: 221 D 221
+
Sbjct: 275 E 275
>gnl|CDD|177960 PLN02326, PLN02326, 3-oxoacyl-[acyl-carrier-protein] synthase III.
Length = 379
Score = 33.6 bits (77), Expect = 0.095
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 24/65 (36%)
Query: 282 KLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVL 341
K+I N+ YG NT SIP +ALD A SGK+KK V+
Sbjct: 326 KVISNLANYG-------NTSAASIP--------LALD---------EAVRSGKVKKGDVI 361
Query: 342 AAMGF 346
A GF
Sbjct: 362 ATAGF 366
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 33.1 bits (76), Expect = 0.11
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 58/184 (31%)
Query: 128 DIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAGR 187
D++AL D L++ N+ +TG PI VDA
Sbjct: 204 DVKALNDALDEYNA--------------KTGWDIPIH--------------VDAASGGFI 235
Query: 188 IPLSIEEIKADFLI-------ISSHKLG-APVGAGALVFREDILLPSPLL-----RGGDQ 234
P +++ DF + +S HK G G G +++R++ LP L+ GGD+
Sbjct: 236 APFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDE 295
Query: 235 EKGQRAGTENYAVIGGFAVAAQ--QMV-------KDIQKRSSRVFAIRDYLEQELKKLIP 285
T N++ V AQ + + I + S V YL +E+ KL P
Sbjct: 296 P----TFTLNFSR-PANQVIAQYYNFLRLGREGYRKIMQNSLDV---ARYLAEEIAKLGP 347
Query: 286 NIII 289
II
Sbjct: 348 FEII 351
>gnl|CDD|147827 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. Some archaeal members are annotated as being
pyridoxal phosphate-dependent enzymes.
Length = 389
Score = 32.6 bits (74), Expect = 0.16
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 126 IVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQA- 184
I D+ + +E++ I + +KEIA+I EY +V+
Sbjct: 138 ITDVNDVETIIEEKGEEV-ILAVLSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGI 196
Query: 185 --------------AGRIPLSIEEIKADFLIISSHK 206
GR+ ++ + +F++
Sbjct: 197 QSEETIRLIAAAHECGRVDAVVQSLDKNFIVPVGGA 232
>gnl|CDD|180248 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 31.4 bits (72), Expect = 0.37
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 149 AVMF--VNNETGVIQP----IKEIAQIVKEYQGILVVDAVQAA----GRIPLSIEE--IK 196
A++ + E G + P KE+ ++ +Y +L+ D VQ G++ +IE ++
Sbjct: 224 AIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKM-FAIEHFGVE 282
Query: 197 ADFLIISSHK-LGAPVGAGALVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAA 255
D II+ K + + GA++ R +++ G A T GG VAA
Sbjct: 283 PD--IITLAKAIAGGLPLGAVIGRAELM---------FLPPGSHANT-----FGGNPVAA 326
>gnl|CDD|162223 TIGR01141, hisC, histidinol-phosphate aminotransferase.
Histidinol-phosphate aminotransferase is a
pyridoxal-phosphate dependent enzyme.
Length = 346
Score = 31.5 bits (72), Expect = 0.40
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 252 AVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAE 311
A+AA + I+K + A R+ L LKK +P + +Y DA N P
Sbjct: 249 AIAALRDDDFIEKTVEEINAERERLYDGLKK-LPGLEVYPSDA----NFVLIRFPRDADA 303
Query: 312 VLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLN 371
+ + L+ +GI V + + +R++ G T+E+ D FL
Sbjct: 304 LFEALLE-KGIIVRDLN----------------SYPGLPNCLRITVG---TREENDRFLA 343
Query: 372 AL 373
AL
Sbjct: 344 AL 345
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 31.3 bits (71), Expect = 0.40
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 19/96 (19%)
Query: 148 IAVMF---VNNETGVIQP----IKEIAQIVKEYQGILVVDAVQAA-GRIP--LSIEEIKA 197
+A +F + + G+I P K++ +I+ E+ +LVVD VQ+ GR +IE
Sbjct: 205 VAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV 264
Query: 198 DFLIISSHKLGAPVGAG----ALVFREDIL--LPSP 227
+ II+ LG P+G G A + R +I+ LP
Sbjct: 265 EPDIIT---LGKPLGGGLPISATIGRAEIMDSLPPL 297
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 30.8 bits (70), Expect = 0.55
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 47/160 (29%)
Query: 148 IAVMF--VNNETGVIQPIKEIAQ----IVKEYQGILVVDAVQAA-GR----IPLSIEEIK 196
+AVM V E GVI +E Q + K++ +L+VD VQ GR + I+
Sbjct: 181 VAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE 240
Query: 197 ADFLIISSHKLGAPVGAG----ALVFREDILLPSPLLRGGDQEKGQRAGTEN-------- 244
D + LG +G G AL+ + ++ + GDQ GT N
Sbjct: 241 PDIM-----TLGKGIGGGVPLAALLAKAEVAVFEA----GDQ-----GGTYNGNPLMTAV 286
Query: 245 -YAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKL 283
AVI + A ++ ++ R +YL+++L +L
Sbjct: 287 GVAVIS--QLLAPGFLEGVRARG-------EYLKEKLLEL 317
>gnl|CDD|179033 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 30.5 bits (70), Expect = 0.74
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 110 HFPSHKIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVN-NETGVIQPIKEIAQ 168
++ ++P G+ D++AL ++ + AV+ N GVI+ ++EIA+
Sbjct: 176 KGQGIEVVEVPYED-GVTDLEALEAAVDDDTA-------AVVVQYPNFFGVIEDLEEIAE 227
Query: 169 IVKEYQGILVV 179
I + +V
Sbjct: 228 IAHAGGALFIV 238
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 30.3 bits (69), Expect = 0.83
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 149 AVMF--VNNETGVIQPI-----KEIAQIVKEYQGILVVDAVQAA-GRI--PLSIEEIKAD 198
AVM V E GVI P +E+ + K++ +L++D VQ GR + E+ D
Sbjct: 170 AVMLEVVQGEGGVI-PADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD 228
Query: 199 FLIISSHKL---GAPVGA 213
I++ K G PVGA
Sbjct: 229 PDIVTVAKGLGNGIPVGA 246
>gnl|CDD|179558 PRK03317, PRK03317, histidinol-phosphate aminotransferase;
Provisional.
Length = 368
Score = 29.8 bits (68), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 149 AVMFV---NNETGVIQPIKEIAQIVKEYQGILVVD 180
V+F+ NN TG P+ ++ I+ GI+VVD
Sbjct: 162 DVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVD 196
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 30.0 bits (68), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 148 IAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD 180
I V V + TG I P+ +I I +E+ +LVVD
Sbjct: 185 IVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD 217
>gnl|CDD|185461 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 29.6 bits (67), Expect = 1.2
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 47/184 (25%)
Query: 128 DIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP----IKEIAQIVKEYQGILVVDAVQ 183
D++AL L+ N V + E GVI P +K++ ++ K+Y +L+VD +Q
Sbjct: 166 DVEALEKLLQDPN-VAAF---IVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQ 221
Query: 184 AA----GRIPLSI--EEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQ--- 234
G++ L+ E +K D ++ LG + G L P + D
Sbjct: 222 TGLGRTGKL-LAHDHEGVKPDIVL-----LGKALSGG--------LYPISAVLANDDVML 267
Query: 235 --EKGQRAGTENYAVIGG------FAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLI-- 284
+ G+ T GG AV A +++K+ +K + + + LK+L+
Sbjct: 268 VIKPGEHGST-----YGGNPLACAVAVEALEVLKE-EKLAENAQRLGEVFRDGLKELLKK 321
Query: 285 PNII 288
+
Sbjct: 322 SPWV 325
>gnl|CDD|180748 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 29.8 bits (67), Expect = 1.3
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 129 IQALTDFLEQRNSTCGIPMIA--VMF-VNNETGVIQP----IKEIAQIVKEYQGILVVDA 181
I+ +F S IA VM V E G I P ++E+ I E+ + V D
Sbjct: 204 IEEFKNFF---ISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADE 260
Query: 182 VQAA----GRIPLSIE--EIKADFLIISSHKLGAPVGAGALVFREDIL 223
+Q G+ +IE ++ D LI S LGA V ++ R++I+
Sbjct: 261 IQTGFARTGKY-FAIEHFDVVPD-LITVSKSLGAGVPISGVIGRKEIM 306
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 29.6 bits (67), Expect = 1.3
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIV--KE 172
+ K+P+ + G D++A+ + G +I + NN TG + P +I ++ K
Sbjct: 142 PVAKVPLRADGAHDVKAML----AADPNAG--LIYICNPNNPTGTVTPRADIEWLLANKP 195
Query: 173 YQGILVVD 180
+L+VD
Sbjct: 196 AGSVLLVD 203
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 29.4 bits (67), Expect = 1.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 155 NETGVIQPIKEIAQIVKEYQGILVVDA 181
E +I+ +KEI + VK + +LV+DA
Sbjct: 189 LEEDLIEEMKEIKEAVKPDEVLLVIDA 215
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase. This model
represents 8-amino-7-oxononanoate synthase, the BioF
protein of biotin biosynthesis. This model is based on a
careful phylogenetic analysis to separate members of
this family from 2-amino-3-ketobutyrate and other
related pyridoxal phosphate-dependent enzymes. In
several species, including Staphylococcus and Coxiella,
a candidate 8-amino-7-oxononanoate synthase is confirmed
by location in the midst of a biotin biosynthesis operon
but scores below the trusted cutoff of this model.
Length = 360
Score = 28.8 bits (65), Expect = 2.5
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 128 DIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
D++ L LE+ +I V + G I P+ ++ + + Y L+VD G
Sbjct: 131 DVEHLERLLEKNRGE-RRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTG 188
>gnl|CDD|179178 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 28.7 bits (65), Expect = 2.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 154 NNETGVIQPIKEIAQIVKEYQGILVVD 180
NN TG + P ++I +I++ ++ VD
Sbjct: 168 NNPTGNLIPEEDIRKILESTDALVFVD 194
>gnl|CDD|180327 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 28.2 bits (64), Expect = 4.1
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 128 DIQALTDFLEQRNSTCGIPMIAVMFVNNET-----GVIQPIKEIAQIVKEYQGILVVD 180
D+ AL L + G +I E+ G + P+ E+ + + + L+VD
Sbjct: 154 DVDALEALLAKW--RAGRALIVT-----ESVFSMDGDLAPLAELVALARRHGAWLLVD 204
>gnl|CDD|162547 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives.
Length = 402
Score = 27.8 bits (62), Expect = 5.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 147 MIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
+IA V + G I PI+EI + +Y + +D V A G
Sbjct: 180 IIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVG 219
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase.
Length = 442
Score = 27.6 bits (61), Expect = 5.8
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 129 IQALTDFLEQRNSTCGIPMIAVM-FVNNETGV----IQPIKEIAQIVKEYQGILVVDAVQ 183
I+ +F+E S P ++ + E GV + +++I ++ +++ L++D VQ
Sbjct: 190 IEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQ 249
Query: 184 A----AGRIPLSIEE--IKADFLIISSHKLGAPVGAGALVFRE-DILLPSPLLRGGDQEK 236
A +G + + E I+ DF+++S G A L+ E D P
Sbjct: 250 AGFGRSGTM-FAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPEFDAWQP----------- 297
Query: 237 GQRAGT---ENYAVIGGFAV----AAQQMVKDIQKRSSRVFAIRDYLEQE 279
GT A++ G + ++ Q+R R+ + D + +E
Sbjct: 298 AGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKE 347
>gnl|CDD|180469 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 27.4 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 154 NNETGVIQPIKEIAQI---VKEYQGILVVD 180
NN GV+ +EIAQI + Y ++VD
Sbjct: 188 NNPAGVVYSAEEIAQIAALARRYGATVIVD 217
>gnl|CDD|179533 PRK03080, PRK03080, phosphoserine aminotransferase; Provisional.
Length = 378
Score = 27.5 bits (62), Expect = 6.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 150 VMFVNNET--GVIQPIKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEI 195
V+F N T GV P+ I + +G+ + DA AA +PL ++
Sbjct: 140 VVFTWNGTTTGVRVPVARW--IGADREGLTICDATSAAFALPLDWSKL 185
>gnl|CDD|177597 PHA03359, PHA03359, UL17 tegument protein; Provisional.
Length = 686
Score = 27.3 bits (61), Expect = 7.4
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 283 LIPNIIIYGKDAERISNTCC------FSIPFLKAEVLQIALDLE------GIAVSAGSAC 330
L+P Y D R++ C S L + A LE G +
Sbjct: 154 LVPPGTRYNADGPRLAALCRQFCAYVRSHAALPPAAKEAAAHLEACLGEDGRSNGDPVLS 213
Query: 331 SSGKIKKNHVLAAMG-FDTSQGAVRVSCGDSTTQEDIDI 368
+ I L A G FDT R+ ++D +I
Sbjct: 214 ADAYIDPEEQLTAPGGFDTPAADARI------EEDDREI 246
>gnl|CDD|179838 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated.
Length = 481
Score = 27.0 bits (61), Expect = 7.9
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 119 IPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVN-NETGVIQP-IKEIAQIVKEYQGI 176
IP G+VD++AL + + T + M N N G+ + I EIA+IV E G+
Sbjct: 188 IPSNEDGLVDLEALKAAVGED--TAAL-----MLTNPNTLGLFERNILEIAEIVHEAGGL 240
Query: 177 LVVD 180
L D
Sbjct: 241 LYYD 244
>gnl|CDD|183994 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 27.0 bits (60), Expect = 8.0
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 148 IAVMFVNNETGVIQP---IKEIAQIVKEYQGILVVD 180
I ++ NN TG + P +++I I +E+Q I+ D
Sbjct: 285 IVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSD 320
>gnl|CDD|182526 PRK10533, PRK10533, putative lipoprotein; Provisional.
Length = 171
Score = 27.0 bits (60), Expect = 8.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 237 GQRAGTENYAVIGGFAVAAQQMVK-DIQKRSSRVFAIRDYLEQELKKLI 284
G R+G V GG AQQ IQ RS+ + A+R YL +L L+
Sbjct: 30 GSRSGP---CVEGGPDSVAQQFYDYRIQHRSNDIAALRPYLSDKLATLL 75
>gnl|CDD|118329 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 26.7 bits (59), Expect = 9.4
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 274 DYLEQELKKLIPNIIIYGKDAERISNTCCFSIPFLKAEVLQI 315
D + + L LI +II+ K+ S+PFL A + Q
Sbjct: 187 DTVLEALADLIKSIIVLPKE-------LKLSVPFLVALMHQT 221
>gnl|CDD|151679 pfam11237, DUF3038, Protein of unknown function (DUF3038). This
family of proteins with unknown function appear to be
restricted to Cyanobacteria.
Length = 171
Score = 26.8 bits (60), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 183 QAAGRIPLSIEEIKADFLIISS 204
++ R PL++EE +A LII
Sbjct: 57 RSTRRGPLTVEEARALVLIICY 78
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,319,534
Number of extensions: 420987
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 77
Length of query: 383
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 288
Effective length of database: 3,941,713
Effective search space: 1135213344
Effective search space used: 1135213344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)