BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781091|ref|YP_003065504.1| putative
pyridoxal-phosphate-dependent aminotransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
(383 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 383
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/383 (100%), Positives = 383/383 (100%)
Query: 1 MFKRVYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGA 60
MFKRVYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGA
Sbjct: 1 MFKRVYLDWNATAPLLEVVRQSFVKSLDFYGNPSSVHKEGQKTRLYIEESRRIIADFCGA 60
Query: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIP 120
KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIP
Sbjct: 61 KPDHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVYAGGHFPSHKIHKIP 120
Query: 121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD 180
VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD
Sbjct: 121 VLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVD 180
Query: 181 AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA 240
AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA
Sbjct: 181 AVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDILLPSPLLRGGDQEKGQRA 240
Query: 241 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT 300
GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT
Sbjct: 241 GTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDYLEQELKKLIPNIIIYGKDAERISNT 300
Query: 301 CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDS 360
CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDS
Sbjct: 301 CCFSIPFLKAEVLQIALDLEGIAVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDS 360
Query: 361 TTQEDIDIFLNALQKIIRTSTVR 383
TTQEDIDIFLNALQKIIRTSTVR
Sbjct: 361 TTQEDIDIFLNALQKIIRTSTVR 383
>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
biogenesis [Candidatus Liberibacter asiaticus str.
psy62]
Length = 406
Score = 80.9 bits (198), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 158/356 (44%), Gaps = 47/356 (13%)
Query: 48 EESRRIIADFCGAKP-DHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVY 106
E++R + F A ++FT SATE+ N L + + H + D + +S +EH +
Sbjct: 70 EKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDEIVLSVMEHHSNI 127
Query: 107 AGGHFPSHK----IHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP 162
+F + + +P+ ++G I + L +R +IA+ ++N G + P
Sbjct: 128 IPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTK-----LIAITHMSNVLGTVIP 182
Query: 163 IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDI 222
IKEI +I E ++VD Q + + +++I D+ II+ HKL P G G L +E
Sbjct: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESR 242
Query: 223 LLP-SPLLRGGDQEKGQRAGTENYAVIG----------GFAVA---AQQMVKDIQKRSSR 268
L P + G + YA + A+A A V+ I ++S
Sbjct: 243 LNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS-- 300
Query: 269 VFAIRDYLEQELKKLIPNIIIYGKDAERISNTC------CFSIPFLKAEVLQIALDLEGI 322
+F+ E+EL + + + + + + ++ + F + + L + LD EGI
Sbjct: 301 IFS----YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGI 356
Query: 323 AVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378
A+ AG+ C+ N +L +G D+ R S T E+ D F+ L+K I+
Sbjct: 357 AIRAGTHCA------NPLLKFLGIDS---LCRASLAMYNTYEEADKFIETLKKSIQ 403
>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 381
Score = 31.6 bits (70), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 144 GIPMIAVMFVNNETGVIQPIKEIAQIVKEYQGILVVDAVQAAG 186
G P I V + + G P+ ++ +I +Y G +VVD A G
Sbjct: 163 GFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATG 205
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 189 PLSIEEIKADFLIISSHKLGAPVGAGALVFRE 220
P+ IEE S H + PVG G VFR+
Sbjct: 334 PIMIEE--------SPHAVNLPVGKGTTVFRD 357
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 163 IKEIAQIVKEYQGILVVDAVQA----AGRI-PLSIEEIKADFLIISSHKLGAPVGAGALV 217
+KE +I K+Y +L+ D V G+I + +I D L +S G + A +
Sbjct: 218 LKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAATL 277
Query: 218 FREDIL 223
E+I
Sbjct: 278 CSEEIF 283
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Query: 288 IIYGKDAERISNTCCFSIP----------FLKAEVLQIALDLEGIAVSAGSACSSGKIKK 337
+I+G D ERIS C I F+ AE+ ++ L L I CS +I
Sbjct: 1 MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYI-------CSDERILI 53
Query: 338 N 338
N
Sbjct: 54 N 54
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 29/198 (14%)
Query: 121 VLSKGIVDI-QALTDFLEQRNSTCGIPMI---AVMFVNNETGVIQPIKEIAQIVKEYQGI 176
+LSK DI Q LTD + R G+ + + V +E+G ++ I + +IVK Q I
Sbjct: 203 ILSKFDSDIRQGLTDVMISR----GMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVI 258
Query: 177 LVVDAVQAAGRIPLSIEEIKAD---FLI-----------------ISSHKLGAPVGA-GA 215
L V I L +K D F+I IS H PV A
Sbjct: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318
Query: 216 LVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDY 275
F E + +P + D A +G A Q ++ ++ F ++ +
Sbjct: 319 ACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCF 378
Query: 276 LEQELKKLIPNIIIYGKD 293
L + + I II++ +
Sbjct: 379 LSKRFEHTIMKIIVHADN 396
>gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 300
Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 115 KIHKIPVLSKGIVDIQALTDFLEQRN--STCGIPMIAVMFVNNETGVIQPIKEIAQIVKE 172
++ +IP GI+ D + + S+CG+P+ + VN T Q + ++K
Sbjct: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
Query: 173 YQG 175
+G
Sbjct: 133 LKG 135
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,493
Number of Sequences: 1233
Number of extensions: 10023
Number of successful extensions: 37
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 10
length of query: 383
length of database: 328,796
effective HSP length: 76
effective length of query: 307
effective length of database: 235,088
effective search space: 72172016
effective search space used: 72172016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)