Query         gi|254781092|ref|YP_003065505.1| hypothetical protein CLIBASIA_04970 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:16:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781092.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1t6aa_ d.129.8.1 (A:) Rbstp22   3.9      46  0.0034   14.2  -1.6   17    5-21     97-113 (124)
  2 d2c0sa1 a.30.7.1 (A:1-57) Hypo   3.2 1.7E+02   0.012   11.5   1.5   17   17-33     36-52  (57)
  3 d1kf6c_ f.21.2.2 (C:) Fumarate   2.5 1.2E+02   0.009   12.1  -0.6   13    4-16     26-38  (130)
  4 d1kkha2 d.58.26.3 (A:181-317)    2.4 1.5E+02   0.011   11.7  -0.2   15    6-20      7-21  (137)
  5 d1ppjd2 f.23.11.1 (D:196-241)    2.4 2.1E+02   0.016   11.0   1.1   25    8-32     12-36  (46)
  6 d2b3ja1 c.97.1.2 (A:1-151) tRN   1.6   3E+02   0.022   10.3   1.7   20   14-33    132-151 (151)
  7 d2axth1 f.23.33.1 (H:2-65) Pho   1.6 2.2E+02   0.016   11.0  -0.6   10    9-18     37-46  (64)
  8 d3b5ha2 b.1.1.4 (A:23-102) Cer   1.5 3.1E+02   0.022   10.2   0.3    4   10-13     65-68  (80)
  9 d1e0ba_ b.34.13.2 (A:) Heteroc   1.4   2E+02   0.014   11.2  -1.1    9   13-21     53-61  (61)
 10 d1t07a_ d.279.1.1 (A:) Hypothe   1.4 2.3E+02   0.017   10.8  -0.8   10    4-13      3-12  (81)

No 1  
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.93  E-value=46  Score=14.17  Aligned_cols=17  Identities=35%  Similarity=0.511  Sum_probs=12.8

Q ss_pred             HCCHHHEEEHHHHCCHH
Q ss_conf             10001111010122079
Q gi|254781092|r    5 KREKFCVFLILFYEGEL   21 (35)
Q Consensus         5 krekfcvflilfyegel   21 (35)
                      |...||-||---++|||
T Consensus        97 KANEfckfLAKkL~geL  113 (124)
T d1t6aa_          97 KANEFSKWLAKTLGGEL  113 (124)
T ss_dssp             HHHHHHHHHHHHHCEEE
T ss_pred             HHHHHHHHHHHHHHCEE
T ss_conf             27689999999741014


No 2  
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=3.20  E-value=1.7e+02  Score=11.47  Aligned_cols=17  Identities=24%  Similarity=0.262  Sum_probs=12.3

Q ss_pred             HCCHHHHHHHHHHHHHC
Q ss_conf             22079999996345521
Q gi|254781092|r   17 YEGELLVKRFMHTKKKN   33 (35)
Q Consensus        17 yegellvkrfmhtkkkn   33 (35)
                      -|=..|+.+||+-+.+|
T Consensus        36 QELD~LIN~~m~~k~~~   52 (57)
T d2c0sa1          36 QELDRLLNLLIELKTKK   52 (57)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999884245


No 3  
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.54  E-value=1.2e+02  Score=12.14  Aligned_cols=13  Identities=38%  Similarity=0.399  Sum_probs=9.2

Q ss_pred             HHCCHHHEEEHHH
Q ss_conf             0100011110101
Q gi|254781092|r    4 MKREKFCVFLILF   16 (35)
Q Consensus         4 mkrekfcvflilf   16 (35)
                      |-||--|++++.|
T Consensus        26 MlRE~T~v~~~~f   38 (130)
T d1kf6c_          26 MLREGTAVPAVWF   38 (130)
T ss_dssp             HHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9988737999999


No 4  
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.44  E-value=1.5e+02  Score=11.70  Aligned_cols=15  Identities=40%  Similarity=0.589  Sum_probs=10.6

Q ss_pred             CCHHHEEEHHHHCCH
Q ss_conf             000111101012207
Q gi|254781092|r    6 REKFCVFLILFYEGE   20 (35)
Q Consensus         6 rekfcvflilfyege   20 (35)
                      +.+.|-||+++++|.
T Consensus         7 ~~~~~~~Lv~~~t~~   21 (137)
T d1kkha2           7 FLKNCKFLIVYAEKR   21 (137)
T ss_dssp             HHHTCCEEEEEEECC
T ss_pred             HHCCCCEEEEECCCC
T ss_conf             760688799973683


No 5  
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.41  E-value=2.1e+02  Score=10.99  Aligned_cols=25  Identities=20%  Similarity=0.150  Sum_probs=15.4

Q ss_pred             HHHEEEHHHHCCHHHHHHHHHHHHH
Q ss_conf             0111101012207999999634552
Q gi|254781092|r    8 KFCVFLILFYEGELLVKRFMHTKKK   32 (35)
Q Consensus         8 kfcvflilfyegellvkrfmhtkkk   32 (35)
                      |.++|++++.---...||+--..-|
T Consensus        12 Kv~~~l~~l~~l~yy~KR~~Ws~lK   36 (46)
T d1ppjd2          12 KMLLMMGLLLPLVYAMKRHKWSVLK   36 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999998623013


No 6  
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=1.58  E-value=3e+02  Score=10.27  Aligned_cols=20  Identities=20%  Similarity=0.292  Sum_probs=13.7

Q ss_pred             HHHHCCHHHHHHHHHHHHHC
Q ss_conf             10122079999996345521
Q gi|254781092|r   14 ILFYEGELLVKRFMHTKKKN   33 (35)
Q Consensus        14 ilfyegellvkrfmhtkkkn   33 (35)
                      +|--|..-|.++|...|++|
T Consensus       132 vl~~e~~~L~~~Ff~~~r~~  151 (151)
T d2b3ja1         132 VLKEACSTLLTTFFKNLRAN  151 (151)
T ss_dssp             TTHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHCC
T ss_conf             18999999999999998585


No 7  
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.56  E-value=2.2e+02  Score=10.96  Aligned_cols=10  Identities=50%  Similarity=1.002  Sum_probs=0.0

Q ss_pred             HHEEEHHHHC
Q ss_conf             1111010122
Q gi|254781092|r    9 FCVFLILFYE   18 (35)
Q Consensus         9 fcvflilfye   18 (35)
                      |+|||+...|
T Consensus        37 f~vfl~iiLe   46 (64)
T d2axth1          37 FLVFLLIILE   46 (64)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 8  
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.54  E-value=3.1e+02  Score=10.23  Aligned_cols=4  Identities=100%  Similarity=2.153  Sum_probs=0.0

Q ss_pred             HEEE
Q ss_conf             1110
Q gi|254781092|r   10 CVFL   13 (35)
Q Consensus        10 cvfl   13 (35)
                      ||||
T Consensus        65 CVFl   68 (80)
T d3b5ha2          65 CVFL   68 (80)
T ss_dssp             EEEE
T ss_pred             EEEC
T ss_conf             9976


No 9  
>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
Probab=1.44  E-value=2e+02  Score=11.16  Aligned_cols=9  Identities=44%  Similarity=1.006  Sum_probs=0.0

Q ss_pred             EHHHHCCHH
Q ss_conf             010122079
Q gi|254781092|r   13 LILFYEGEL   21 (35)
Q Consensus        13 lilfyegel   21 (35)
                      ++.|||..|
T Consensus        53 mL~fYE~HL   61 (61)
T d1e0ba_          53 MLQFYESHL   61 (61)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHCC
T ss_conf             999887219


No 10 
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.42  E-value=2.3e+02  Score=10.84  Aligned_cols=10  Identities=30%  Similarity=0.504  Sum_probs=0.0

Q ss_pred             HHCCHHHEEE
Q ss_conf             0100011110
Q gi|254781092|r    4 MKREKFCVFL   13 (35)
Q Consensus         4 mkrekfcvfl   13 (35)
                      |.|.-||+.+
T Consensus         3 Msr~V~C~k~   12 (81)
T d1t07a_           3 MSRTVMCRKY   12 (81)
T ss_dssp             CCCEEEETTT
T ss_pred             CCCEEEEHHH
T ss_conf             8736620872


Done!