HHsearch alignment for GI: 254781093 and conserved domain: COG3946
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion].
Probab=98.25 E-value=0.00012 Score=48.09 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCEEEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCC---
Q ss_conf 9999999973984999853-155887677852102389999989999862354674058887203687876450386---
Q gi|254781093|r 47 YQLFYLFQQRGFVSLRFNF-RGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMRRP--- 122 (225)
Q Consensus 47 ~~la~~l~~~G~~vl~fd~-RG~G~S~G~~~~g~~E~~D~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~~p--- 122 (225)
T Consensus 277 k~v~~~l~~~gvpVvGvdsLRYfW-~~rtP---e~~a~Dl~r~i~~y~~~-w~~~~~~liGySfGADvlP~~~n~L~~~~ 351 (456)
T COG3946 277 KEVAEALQKQGVPVVGVDSLRYFW-SERTP---EQIAADLSRLIRFYARR-WGAKRVLLIGYSFGADVLPFAYNRLPPAT 351 (456)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHH-CCCCH---HHHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCHHHHHHHHHCCHHH
T ss_conf 999999997799556430023551-56897---88877799999999886-37643899960466404689987588778
Q ss_pred --CHHEEEE------------------CCCCCCCCCCCCCCCC-CCCEEEEECC--CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf --2133012------------------2757443332223433-4773776168--655028999999999986077996
Q gi|254781093|r 123 --EINGFIS------------------VAPQPKSYDFSFLAPC-PSSGLIINGS--NDTVATTSDVKDLVNKLMNQKGIS 179 (225)
Q Consensus 123 --~i~~~v~------------------isp~~~~~~~~~l~~~-~~p~LiIhG~--~D~~vp~~~~~~~~~~l~~~~~~~ 179 (225)
T Consensus 352 r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~l------------~~~~ 419 (456)
T COG3946 352 RQRVRMVSLLGLGRTADFEISVEGWLGMAGEGAGDVVPDIAKLPLARVQCIYGQEEKDTACPSL------------KAKG 419 (456)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCC------------HHHC
T ss_conf 8899999997415543279999655303776777764255507744068874576655668764------------1114
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 079997879847558589999999999997312
Q gi|254781093|r 180 ITHKVIPDANHFFIGKVDELINECAHYLDNSLD 212 (225)
Q Consensus 180 ~~~~~i~ga~H~f~~~~~~l~~~i~~fl~~~L~ 212 (225)
T Consensus 420 ~~~v~lpGgHH-Fd~dy~~la~~il~~~~~r~~ 451 (456)
T COG3946 420 VDTVKLPGGHH-FDGDYEKLAKAILQGMRLRAP 451 (456)
T ss_pred CEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 34674478766-675289999999998875168