HHsearch alignment for GI: 254781093 and conserved domain: COG4287

>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only].
Probab=95.00  E-value=0.029  Score=33.61  Aligned_cols=117  Identities=17%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             HHHHHHHHHC--CCCCCEEEEEECHHHHHHHHHHHCCCCHHEEEECCCC---------------CCCCC-----------
Q ss_conf             9899998623--5467405888720368787645038621330122757---------------44333-----------
Q gi|254781093|r   87 AALDWVQSLN--PESKSCWIAGYSFGAWISMQLLMRRPEINGFISVAPQ---------------PKSYD-----------  138 (225)
Q Consensus        87 aa~~~l~~~~--~~~~~i~l~G~S~Gg~val~~a~~~p~i~~~v~isp~---------------~~~~~-----------  138 (225)
T Consensus       219 rAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi  298 (507)
T COG4287         219 RAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGI  298 (507)
T ss_pred             HHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             99998886411215424798444532188888886086301103667763160999999998627888723143676417


Q ss_pred             --------CCC----------C-----CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf             --------222----------3-----43347737761686550289999999999860779960799978798475585
Q gi|254781093|r  139 --------FSF----------L-----APCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISITHKVIPDANHFFIGK  195 (225)
Q Consensus       139 --------~~~----------l-----~~~~~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~i~ga~H~f~~~  195 (225)
T Consensus       299 ~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~k----aLrmvPN~~H~~~n-  373 (507)
T COG4287         299 DERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGEK----ALRMVPNDPHNLIN-  373 (507)
T ss_pred             HHHHCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCCCCE----EEEECCCCCCHHHH-
T ss_conf             7763488887899861678776432112125430133166885237774301110488732----25627897201457-


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             89999999999997
Q gi|254781093|r  196 VDELINECAHYLDN  209 (225)
Q Consensus       196 ~~~l~~~i~~fl~~  209 (225)
T Consensus       374 -~~i~esl~~flnr  386 (507)
T COG4287         374 -QFIKESLEPFLNR  386 (507)
T ss_pred             -HHHHHHHHHHHHH
T ss_conf             -8888889999888