HHsearch alignment for GI: 254781093 and conserved domain: COG4287
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only].
Probab=95.00 E-value=0.029 Score=33.61 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred HHHHHHHHHC--CCCCCEEEEEECHHHHHHHHHHHCCCCHHEEEECCCC---------------CCCCC-----------
Q ss_conf 9899998623--5467405888720368787645038621330122757---------------44333-----------
Q gi|254781093|r 87 AALDWVQSLN--PESKSCWIAGYSFGAWISMQLLMRRPEINGFISVAPQ---------------PKSYD----------- 138 (225)
Q Consensus 87 aa~~~l~~~~--~~~~~i~l~G~S~Gg~val~~a~~~p~i~~~v~isp~---------------~~~~~----------- 138 (225)
T Consensus 219 rAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi 298 (507)
T COG4287 219 RAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGI 298 (507)
T ss_pred HHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99998886411215424798444532188888886086301103667763160999999998627888723143676417
Q ss_pred --------CCC----------C-----CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf --------222----------3-----43347737761686550289999999999860779960799978798475585
Q gi|254781093|r 139 --------FSF----------L-----APCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISITHKVIPDANHFFIGK 195 (225)
Q Consensus 139 --------~~~----------l-----~~~~~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~i~ga~H~f~~~ 195 (225)
T Consensus 299 ~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~k----aLrmvPN~~H~~~n- 373 (507)
T COG4287 299 DERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGEK----ALRMVPNDPHNLIN- 373 (507)
T ss_pred HHHHCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECCCCCCE----EEEECCCCCCHHHH-
T ss_conf 7763488887899861678776432112125430133166885237774301110488732----25627897201457-
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999997
Q gi|254781093|r 196 VDELINECAHYLDN 209 (225)
Q Consensus 196 ~~~l~~~i~~fl~~ 209 (225)
T Consensus 374 -~~i~esl~~flnr 386 (507)
T COG4287 374 -QFIKESLEPFLNR 386 (507)
T ss_pred -HHHHHHHHHHHHH
T ss_conf -8888889999888