HHsearch alignment for GI: 254781093 and conserved domain: TIGR03230
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=97.92 E-value=0.00017 Score=47.04 Aligned_cols=133 Identities=14% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HHHC-CCEEEEEEECCCCCCCCCCCCCCH----HHHHHHHHHHHHHHH
Q ss_conf 8778799995789988889989999999999-9973-984999853155887677852102----389999989999862
Q gi|254781093|r 22 NPNAPIALILHPHPRFGGTMNDNIVYQLFYL-FQQR-GFVSLRFNFRGIGRSEGEFDYGDG----ELSDAAAALDWVQSL 95 (225)
Q Consensus 22 ~~~~~~vv~~Hp~p~~GG~~~~~~~~~la~~-l~~~-G~~vl~fd~RG~G~S~G~~~~g~~----E~~D~~aa~~~l~~~ 95 (225)
T Consensus 38 n~s~pT~~IIHG~~~-~g~~~~W-v~~m~~all~~~~d~NVI~VDW~~-g-a~~~Y~~A~~ntr~VG~~iA~~i~~L~~~ 113 (442)
T TIGR03230 38 NHETKTFIVIHGWTV-TGMFESW-VPKLVAALYEREPSANVIVVDWLS-R-AQQHYPTSAAYTKLVGKDVAKFVNWMQEE 113 (442)
T ss_pred CCCCCEEEEECCCCC-CCCCCHH-HHHHHHHHHHHCCCEEEEEEECHH-H-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988980999888888-8987568-999999999627981899980704-2-27235999998999999999999999985
Q ss_pred -CCCCCCEEEEEECHHHHHHHHHHHCCC-CHHEEEECCCCCCCCCCCC----CCCC-CCCEEEEECCCCC
Q ss_conf -354674058887203687876450386-2133012275744333222----3433-4773776168655
Q gi|254781093|r 96 -NPESKSCWIAGYSFGAWISMQLLMRRP-EINGFISVAPQPKSYDFSF----LAPC-PSSGLIINGSNDT 158 (225)
Q Consensus 96 -~~~~~~i~l~G~S~Gg~val~~a~~~p-~i~~~v~isp~~~~~~~~~----l~~~-~~p~LiIhG~~D~ 158 (225)
T Consensus 114 ~g~~~~~vHlIGhSLGAHvAG~aG~~~~~~lgRITGLDPA~P~F~~~~~~~RLd~sDA~FVDVIHTd~~~ 183 (442)
T TIGR03230 114 FNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRG 183 (442)
T ss_pred HCCCHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCC
T ss_conf 1998113489852242012223456406875608841687521367985544694337758688169865