HHsearch alignment for GI: 254781093 and conserved domain: TIGR03343
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.90 E-value=3.6e-22 Score=153.48 Aligned_cols=181 Identities=17% Similarity=0.245 Sum_probs=123.2
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCCCCCCCH--HHHHHHHHHHHCCCEEEEEEECCCCCCCCCC-CC--CCHHHHHHHH
Q ss_conf 87999668887787999957899888899899--9999999999739849998531558876778-52--1023899999
Q gi|254781093|r 13 LEGRYQPSTNPNAPIALILHPHPRFGGTMNDN--IVYQLFYLFQQRGFVSLRFNFRGIGRSEGEF-DY--GDGELSDAAA 87 (225)
Q Consensus 13 l~~~~~~~~~~~~~~vv~~Hp~p~~GG~~~~~--~~~~la~~l~~~G~~vl~fd~RG~G~S~G~~-~~--g~~E~~D~~a 87 (225)
T Consensus 20 ~ri~Y~~~G-~G-~pvvllHG~---~~~~~~W~~~~~~l-~~~~~~~yrVIa~Dl~G~G~S~~~~~~~~~~~~~a~~~~~ 93 (282)
T TIGR03343 20 FRIHYNEAG-NG-EAVIMLHGG---GPGAGGWSNYYRNI-GPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKG 93 (282)
T ss_pred EEEEEEEEC-CC-CEEEEECCC---CCCHHHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 899999974-68-818988399---98742789999977-9999789859997189988899876555324799999999
Q ss_pred HHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCC-HHEEEECCCCCCCC-----------------------------
Q ss_conf 899998623546740588872036878764503862-13301227574433-----------------------------
Q gi|254781093|r 88 ALDWVQSLNPESKSCWIAGYSFGAWISMQLLMRRPE-INGFISVAPQPKSY----------------------------- 137 (225)
Q Consensus 88 a~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~~p~-i~~~v~isp~~~~~----------------------------- 137 (225)
T Consensus 94 lld---~L~--i~~~~lvG~S~GG~iA~~~A~~~P~rV~~LvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (282)
T TIGR03343 94 LMD---ALD--IEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (282)
T ss_pred HHH---HCC--CCCEEEEEECCHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999---749--983799973737999999999786862478998887666212465708899999997515789999999
Q ss_pred ------CC----------------------------------------CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf ------32----------------------------------------22343347737761686550289999999999
Q gi|254781093|r 138 ------DF----------------------------------------SFLAPCPSSGLIINGSNDTVATTSDVKDLVNK 171 (225)
Q Consensus 138 ------~~----------------------------------------~~l~~~~~p~LiIhG~~D~~vp~~~~~~~~~~ 171 (225)
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PtLvi~G~~D~~~p~~~~~~l~~~ 248 (282)
T TIGR03343 169 LNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWN 248 (282)
T ss_pred HHHHCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99853480006899999999998729788999999976401202344788721898779998378874589999999986
Q ss_pred HHHCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 8607799607999787984755-8589999999999997
Q gi|254781093|r 172 LMNQKGISITHKVIPDANHFFI-GKVDELINECAHYLDN 209 (225)
Q Consensus 172 l~~~~~~~~~~~~i~ga~H~f~-~~~~~l~~~i~~fl~~ 209 (225)
T Consensus 249 ip~a-----~l~~i~~aGH~~~~E~P~~fn~~l~~FLk~ 282 (282)
T TIGR03343 249 MPDA-----QLHVFSRCGHWAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred CCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8998-----899989999954886499999999998486