HHsearch alignment for GI: 254781093 and conserved domain: TIGR03611
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.89 E-value=1.6e-21 Score=149.65 Aligned_cols=178 Identities=21% Similarity=0.322 Sum_probs=126.6
Q ss_pred EEECCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--H-HHHHHHHHHHHH
Q ss_conf 9966888778799995789988889989999999999997398499985315588767785210--2-389999989999
Q gi|254781093|r 16 RYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVSLRFNFRGIGRSEGEFDYGD--G-ELSDAAAALDWV 92 (225)
Q Consensus 16 ~~~~~~~~~~~~vv~~Hp~p~~GG~~~~~~~~~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g~--~-E~~D~~aa~~~l 92 (225)
T Consensus 4 ~~~g~~~~~~P~lvllH---G~~~~~--~~w~~~~~~L~~~-~rvi~~Dl~G~G~S~~~~~~~ys~~~~a~dl~~~l~~- 76 (257)
T TIGR03611 4 ELHGPPDADAPTVVLSS---GLGGSG--SYWAPQLDVLTQR-FHVVTYDHRGTGRSPEELPPGYSIAHMADDVLQLLDA- 76 (257)
T ss_pred EEECCCCCCCCEEEEEC---CCCCCH--HHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-
T ss_conf 99589999999599979---986688--8999999998269-8699978999999999999999999999999999997-
Q ss_pred HHHCCCCCCEEEEEECHHHHHHHHHHHCCCC-HHEEEECCCCCCCCC-------------------------------C-
Q ss_conf 8623546740588872036878764503862-133012275744333-------------------------------2-
Q gi|254781093|r 93 QSLNPESKSCWIAGYSFGAWISMQLLMRRPE-INGFISVAPQPKSYD-------------------------------F- 139 (225)
Q Consensus 93 ~~~~~~~~~i~l~G~S~Gg~val~~a~~~p~-i~~~v~isp~~~~~~-------------------------------~- 139 (225)
T Consensus 77 --l~--~~~~~lvG~S~Gg~va~~~a~~~P~~V~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T TIGR03611 77 --LG--IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPAD 152 (257)
T ss_pred --CC--CCCCEEEEECCCHHHHHHHHHHCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHH
T ss_conf --69--98726998477289999999969565408889888666883566678999999983277889987677516745
Q ss_pred ---------------------------------------CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf ---------------------------------------22343347737761686550289999999999860779960
Q gi|254781093|r 140 ---------------------------------------SFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI 180 (225)
Q Consensus 140 ---------------------------------------~~l~~~~~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~~ 180 (225)
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~ip~-----~ 227 (257)
T TIGR03611 153 WISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN-----A 227 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCC-----C
T ss_conf 44230467768999998737768899999998862584888854899779996268876899999999987899-----8
Q ss_pred EEEEECCCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 799978798475-58589999999999997
Q gi|254781093|r 181 THKVIPDANHFF-IGKVDELINECAHYLDN 209 (225)
Q Consensus 181 ~~~~i~ga~H~f-~~~~~~l~~~i~~fl~~ 209 (225)
T Consensus 228 ~~~~i~~~GH~~~~e~P~~~~~~l~~FLks 257 (257)
T TIGR03611 228 QLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred EEEEECCCCCCHHHHCHHHHHHHHHHHHCC
T ss_conf 899989999710786999999999999675