HHsearch alignment for GI: 254781093 and conserved domain: pfam01083

Probab=96.24  E-value=0.03  Score=33.59  Aligned_cols=148  Identities=14%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHH
Q ss_conf             998999999999999739849998531558876778521023-8999998999986235467405888720368787645
Q gi|254781093|r   40 TMNDNIVYQLFYLFQQRGFVSLRFNFRGIGRSEGEFDYGDGE-LSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLL  118 (225)
Q Consensus        40 ~~~~~~~~~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g~~E-~~D~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a  118 (225)
T Consensus        22 ~~G~~~~~al~~~~g~~~v~~~~V~YpA~~~~~-~~~~s~~~G~~~~~~~~~~~~~~CP~-tkiVl~GYSQGA~Vv~~a~   99 (179)
T pfam01083        22 SVGPAVVSALESAPGSTSVAVQGVNYPADLGQN-LYAGSSAAGINDAARLVNSAASKCPN-TKIVLGGYSQGAAVMDNAI   99 (179)
T ss_pred             CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHHHHH
T ss_conf             540899999984538983257724766535666-66665789999999999999963999-7289864160689987652


Q ss_pred             HCC-------CCHHEEEECCCCCCCCCCCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             038-------621330122757443332223433-477377616865502899999999998607799607999787984
Q gi|254781093|r  119 MRR-------PEINGFISVAPQPKSYDFSFLAPC-PSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISITHKVIPDANH  190 (225)
Q Consensus       119 ~~~-------p~i~~~v~isp~~~~~~~~~l~~~-~~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~i~ga~H  190 (225)
T Consensus       100 ~~~~l~~~~~~~V~AvvlfGdP~~~~~~~~i~~~~~~k~~~~C~~GD~vC~~-------------~g~~-------~~~H  159 (179)
T pfam01083       100 CGGGLPAAVADKVKAVVLFGDPSNGQGLPGISPLYASKTISYCATGDPVCDG-------------TGNN-------LPAH  159 (179)
T ss_pred             CCCCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCEECC-------------CCCC-------CHHH
T ss_conf             2688997787236789995377666897877986277775001699984089-------------9988-------5403


Q ss_pred             CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             755858999999999999731
Q gi|254781093|r  191 FFIGKVDELINECAHYLDNSL  211 (225)
Q Consensus       191 ~f~~~~~~l~~~i~~fl~~~L  211 (225)
T Consensus       160 ~--~Y~~~~~~~Aa~Fv~~k~  178 (179)
T pfam01083       160 L--SYGSDYTTQAAAFVASKL  178 (179)
T ss_pred             H--CHHHCCHHHHHHHHHHHC
T ss_conf             2--632342558999999863