HHsearch alignment for GI: 254781093 and conserved domain: pfam03403
>pfam03403 PAF-AH_p_II isoform II. Platelet-activating factor acetylhydrolase (PAF-AH) is a subfamily of phospholipases A2, responsible for inactivation of platelet-activating factor through cleavage of an acetyl group. Three known PAF-AHs are the brain heterotrimeric PAF-AH Ib, whose catalytic beta and gamma subunits are aligned in pfam02266, the extracellular, plasma PAF-AH (pPAF-AH), and the intracellular PAF-AH isoform II (PAF-AH II). This family aligns pPAF-AH and PAF-AH II, whose similarity was previously noted.
Probab=99.46 E-value=9.3e-12 Score=90.80 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=116.1
Q ss_pred EEEEEECCC--CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC--------------CCCC-
Q ss_conf 879996688--87787999957899888899899999999999973984999853155887--------------6778-
Q gi|254781093|r 13 LEGRYQPST--NPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVSLRFNFRGIGRS--------------EGEF- 75 (225)
Q Consensus 13 l~~~~~~~~--~~~~~~vv~~Hp~p~~GG~~~~~~~~~la~~l~~~G~~vl~fd~RG~G~S--------------~G~~- 75 (225)
T Consensus 86 ~~a~~nap~~~~~~~PvvIFSH---Glgg~R~~--yS~~~eeLAS~GyVV~aidH~d~Sa~~t~~~~~~~~~~~~~~~~~ 160 (372)
T pfam03403 86 LPAIWNAPFKTGEKYPLIVFSH---GLGAFRTI--YSAICIELASHGFVVAAVEHRDRSASATYFFKDKNAAEVEEPSWI 160 (372)
T ss_pred CCCCCCCCCCCCCCCCEEEECC---CCCCCHHH--HHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 4321478777789874899889---98762567--899999987183299971567886403775477766546654212
Q ss_pred --CCCC---------H----HHHHHHHHHHHHHHH---------------------CCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf --5210---------2----389999989999862---------------------354674058887203687876450
Q gi|254781093|r 76 --DYGD---------G----ELSDAAAALDWVQSL---------------------NPESKSCWIAGYSFGAWISMQLLM 119 (225)
Q Consensus 76 --~~g~---------~----E~~D~~aa~~~l~~~---------------------~~~~~~i~l~G~S~Gg~val~~a~ 119 (225)
T Consensus 161 ~~~~~~~~~~~~~r~~qv~~R~~e~~~vl~~l~~l~~g~~~~~~~~~~~~~~~l~g~lD~~~I~~~GHSfGGATa~~~l~ 240 (372)
T pfam03403 161 YLRDVNAEEEFKIRNEQVGQRAQECSKALSIILQIDLGTPVENVLDSDFDLQQLKGNLDTSKIAVIGHSFGGATVIQSLS 240 (372)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 01355641568888899999999999999999985258853112466545677605456463579853403799999986
Q ss_pred CCCCHHEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCC----
Q ss_conf 386213301227574433322234334773776168655028999999999986077996079997879847-558----
Q gi|254781093|r 120 RRPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISITHKVIPDANHF-FIG---- 194 (225)
Q Consensus 120 ~~p~i~~~v~isp~~~~~~~~~l~~~~~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~i~ga~H~-f~~---- 194 (225)
T Consensus 241 ~D~R~~agI~LDgwm~Pl~~~~~~~~~~P~l~i~se~f~--~~~n~~~-~~~~~~~~~-~~~~~ti~gs~H~sftD~~~~ 316 (372)
T pfam03403 241 EDTRFRCGIALDAWMYPVGQDQYSQARQPLLFINSEKFQ--WNENIFK-MKKIYSPDK-ESKMITLKGSVHQNFSDFPFV 316 (372)
T ss_pred HCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCHHH-HHHHHCCCC-CCEEEEECCCCCCCCCCCHHH
T ss_conf 187713798415523657632000368877998345456--7556899-998734788-724999789746786641023
Q ss_pred --C-----------------HHHHHHHHHHHHHHHCCC
Q ss_conf --5-----------------899999999999973122
Q gi|254781093|r 195 --K-----------------VDELINECAHYLDNSLDE 213 (225)
Q Consensus 195 --~-----------------~~~l~~~i~~fl~~~L~~ 213 (225)
T Consensus 317 ~p~~~~~~~~~~g~idp~~~~~i~n~~~l~Fl~~hL~~ 354 (372)
T pfam03403 317 TGKIIGKFFKLKGEIDPYEAMDIANRASLAFLQKHLDL 354 (372)
T ss_pred CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 51878864267766699999999999999999987177