HHsearch alignment for GI: 254781093 and conserved domain: pfam06057
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=99.07 E-value=3.6e-09 Score=75.22 Aligned_cols=148 Identities=22% Similarity=0.208 Sum_probs=97.4
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCC---
Q ss_conf 99999999739849998531558876778521023-89999989999862354674058887203687876450386---
Q gi|254781093|r 47 YQLFYLFQQRGFVSLRFNFRGIGRSEGEFDYGDGE-LSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMRRP--- 122 (225)
Q Consensus 47 ~~la~~l~~~G~~vl~fd~RG~G~S~G~~~~g~~E-~~D~~aa~~~l~~~~~~~~~i~l~G~S~Gg~val~~a~~~p--- 122 (225)
T Consensus 19 ~~va~~L~~~GvpVvGvdSLrYFW~~kt----P~q~a~Dl~~ii~~Y~~~w-~~~~v~LiGYSFGADvlP~~~n~LP~~~ 93 (192)
T pfam06057 19 KEVGSALQKQGVPVVGVDSLRYFWSERT----PEEVADDLDRIIDTYRKRW-KVKNVVLIGYSFGADVLPAAYNRLPPAT 93 (192)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHCCCC----HHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCHHHHHHHHCCHHH
T ss_conf 9999999977983655326888756599----8999999999999999985-8965999961787226665461099999
Q ss_pred --CHHEEEECCCCCCCCCCC-------------------CCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf --213301227574433322-------------------2343-347737761686550289999999999860779960
Q gi|254781093|r 123 --EINGFISVAPQPKSYDFS-------------------FLAP-CPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI 180 (225)
Q Consensus 123 --~i~~~v~isp~~~~~~~~-------------------~l~~-~~~p~LiIhG~~D~~vp~~~~~~~~~~l~~~~~~~~ 180 (225)
T Consensus 94 r~~v~~v~LL~~~~~a-dfeihv~~wlg~~~~~~~~~~pei~~l~~~~v~CiyG~~E~d~~----------cp~l~~~~~ 162 (192)
T pfam06057 94 KQRVRQVSLLALGKKA-DFEISVEGWLGWDGEGKADPVPDLARLPPARVQCIYGQDEKDTA----------CPSLRQRGA 162 (192)
T ss_pred HHHHHEEEEECCCCCC-EEEEEEHHHCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCC----------CCCCCCCCC
T ss_conf 8541178884468853-18998323016788775675467860998706999758878766----------856567887
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 7999787984755858999999999999731
Q gi|254781093|r 181 THKVIPDANHFFIGKVDELINECAHYLDNSL 211 (225)
Q Consensus 181 ~~~~i~ga~H~f~~~~~~l~~~i~~fl~~~L 211 (225)
T Consensus 163 ~~i~lpG-gHHFd~Dy~~la~~Il~~l~~r~ 192 (192)
T pfam06057 163 EVVALPG-GHHFDGDYEALAKRILQGLRARL 192 (192)
T ss_pred EEEECCC-CCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7996589-87778759999999999998329