BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781093|ref|YP_003065506.1| hypothetical protein
CLIBASIA_04975 [Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781093|ref|YP_003065506.1| hypothetical protein CLIBASIA_04975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 225

 Score =  469 bits (1206), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MPEVVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVS 60
           MPEVVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVS
Sbjct: 1   MPEVVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVS 60

Query: 61  LRFNFRGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR 120
           LRFNFRGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR
Sbjct: 61  LRFNFRGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR 120

Query: 121 RPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI 180
           RPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI
Sbjct: 121 RPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI 180

Query: 181 THKVIPDANHFFIGKVDELINECAHYLDNSLDEKFTLLKSIKHLR 225
           THKVIPDANHFFIGKVDELINECAHYLDNSLDEKFTLLKSIKHLR
Sbjct: 181 THKVIPDANHFFIGKVDELINECAHYLDNSLDEKFTLLKSIKHLR 225


>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 265

 Score = 24.6 bits (52), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 140 SFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGI---------SITHKVIPDANH 190
           S L P       + G +  + T  +V+  VN  ++ +GI         S++ +V+ D   
Sbjct: 148 SILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK 207

Query: 191 FFIGKV 196
              GKV
Sbjct: 208 NLGGKV 213


>537021.9.peg.532_1 
          Length = 38

 Score = 23.5 bits (49), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 45 IVYQLFYLFQQRGFVSL 61
          I+ Q FYL Q+ GF+S+
Sbjct: 20 IIVQSFYLQQRNGFLSI 36


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,167
Number of Sequences: 1233
Number of extensions: 6286
Number of successful extensions: 9
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 225
length of database: 328,796
effective HSP length: 71
effective length of query: 154
effective length of database: 241,253
effective search space: 37152962
effective search space used: 37152962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)