BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781093|ref|YP_003065506.1| hypothetical protein CLIBASIA_04975 [Candidatus Liberibacter asiaticus str. psy62] (225 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781093|ref|YP_003065506.1| hypothetical protein CLIBASIA_04975 [Candidatus Liberibacter asiaticus str. psy62] Length = 225 Score = 469 bits (1206), Expect = e-134, Method: Compositional matrix adjust. Identities = 225/225 (100%), Positives = 225/225 (100%) Query: 1 MPEVVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVS 60 MPEVVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVS Sbjct: 1 MPEVVFNGPSGRLEGRYQPSTNPNAPIALILHPHPRFGGTMNDNIVYQLFYLFQQRGFVS 60 Query: 61 LRFNFRGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR 120 LRFNFRGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR Sbjct: 61 LRFNFRGIGRSEGEFDYGDGELSDAAAALDWVQSLNPESKSCWIAGYSFGAWISMQLLMR 120 Query: 121 RPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI 180 RPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI Sbjct: 121 RPEINGFISVAPQPKSYDFSFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGISI 180 Query: 181 THKVIPDANHFFIGKVDELINECAHYLDNSLDEKFTLLKSIKHLR 225 THKVIPDANHFFIGKVDELINECAHYLDNSLDEKFTLLKSIKHLR Sbjct: 181 THKVIPDANHFFIGKVDELINECAHYLDNSLDEKFTLLKSIKHLR 225 >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Query: 140 SFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGI---------SITHKVIPDANH 190 S L P + G + + T +V+ VN ++ +GI S++ +V+ D Sbjct: 148 SILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK 207 Query: 191 FFIGKV 196 GKV Sbjct: 208 NLGGKV 213 >537021.9.peg.532_1 Length = 38 Score = 23.5 bits (49), Expect = 2.9, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 13/17 (76%) Query: 45 IVYQLFYLFQQRGFVSL 61 I+ Q FYL Q+ GF+S+ Sbjct: 20 IIVQSFYLQQRNGFLSI 36 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.139 0.426 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,167 Number of Sequences: 1233 Number of extensions: 6286 Number of successful extensions: 9 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 4 length of query: 225 length of database: 328,796 effective HSP length: 71 effective length of query: 154 effective length of database: 241,253 effective search space: 37152962 effective search space used: 37152962 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)