HHsearch alignment for GI: 254781094 and conserved domain: smart00836
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=98.45 E-value=5.9e-06 Score=59.86 Aligned_cols=108 Identities=17% Similarity=0.299 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHCCCCC--CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999855653124677--7773856835989999999999999999998502538999999985327888751027
Q gi|254781094|r 591 LSAKRIFQILAIEEKKNREI--SLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQV 668 (702)
Q Consensus 591 ~a~KRv~NIL~~~~k~~~~~--~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnV 668 (702)
T Consensus 3 Ya~aRi~SIl~k~~~~~~~~~~~~~~~~~~l~~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~ 82 (122)
T smart00836 3 YAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKC 82 (122)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999999612237786432313353259999999999999778999999997695899999999999999998438
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 03688-6899999999999999999860684
Q gi|254781094|r 669 LVNVD-DREVRDNRLSLLQYIKNIILIVINV 698 (702)
Q Consensus 669 mVm~e-D~~IR~NRL~LL~~i~~~f~~iaDf 698 (702)
T Consensus 83 ~Il~~~~~~~~~~RL~L~~~~~~vl~~~l~l 113 (122)
T smart00836 83 RVLGEENPELRAARLALLKAVRQVLANGLRL 113 (122)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4236898999999999999999999999874