HHsearch alignment of GI: 254781094 and MMDB domain: 1vqr_A_

>1vqr_A (A:) Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp}
Probab=95.42  E-value=0.19  Score=28.56  Aligned_cols=140  Identities=10%  Similarity=-0.045  Sum_probs=99.9

Q ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH-------------HHHHHHHHHHC-------------C
Q ss_conf             31345513899898999999998865299-988999999974-------------23678889840-------------3
Q gi|254781094|r  378 VFHAKIGTQGERVSRIRVLGKKIAQLIDA-DVALVDRAIVLS-------------KADLCTEIVRE-------------F  430 (702)
Q Consensus       378 ~F~~~LGs~~dK~~Ri~~la~~la~~l~~-~~~~~~rAa~L~-------------KaDL~t~mV~E-------------F  430 (702)
                      ......-.++....++..++..+|..++. +.+.+.-|+.|.             |..-.+..-.+             |
T Consensus       117 ~~~~~~~~~~~hs~~~A~la~~la~~l~~~~~~~~~~agllhdiGkl~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  196 (297)
T 1vqr_A          117 PYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAXLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFL  196 (297)
T ss_dssp             GGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             66778999999978999999999876254268999986777530299998650587888999987457998999999996


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             45789999999862369988999999973447767778863588999999749989876510567687769688887434
Q gi|254781094|r  431 PELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATL  510 (702)
Q Consensus       431 peLQG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~  510 (702)
                      -.-....|..-+..-+.+.+++++|..||-|-..++..  ...+.++++||.+|.++           +..||.-.....
T Consensus       197 ~~~h~~~g~~~l~~w~~~~~~~~~i~~hh~~~~~~~~~--~~~~~iv~iAd~~~a~~-----------~~~~~~~~~~~~  263 (297)
T 1vqr_A          197 GVDHISFLGFLLHRWNFDDVLIESICFVRTPHAAREKV--KKSAYALAITDHLFAPH-----------DGSSPFNAKAAV  263 (297)
T ss_dssp             SSCHHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTTT--HHHHHHHHHHHHHHCTT-----------TTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCH--HHHHHHHHHHHHHHHHH-----------CCCCCCCHHHHH
T ss_conf             99999999999998699999999999846985288306--78999999999999871-----------478970067888


Q ss_pred             HHHHHHHHCCCCCCHHHHHH
Q ss_conf             46899983799788789630
Q gi|254781094|r  511 GIIRIILENKIDIPLSQFIE  530 (702)
Q Consensus       511 GiirIl~e~~l~l~l~~li~  530 (702)
                      ..++.+...+++..+.+.+.
T Consensus       264 ~~l~~l~~~~~d~~~~~~~~  283 (297)
T 1vqr_A          264 ALLKEAKTQGINFDLNNLLS  283 (297)
T ss_dssp             HHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHH
T ss_conf             87899998553787999999