HHsearch alignment of GI: 254781094 and MMDB domain: 1vqr_A_
>1vqr_A (A:) Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp}
Probab=95.42 E-value=0.19 Score=28.56 Aligned_cols=140 Identities=10% Similarity=-0.045 Sum_probs=99.9
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH-------------HHHHHHHHHHC-------------C
Q ss_conf 31345513899898999999998865299-988999999974-------------23678889840-------------3
Q gi|254781094|r 378 VFHAKIGTQGERVSRIRVLGKKIAQLIDA-DVALVDRAIVLS-------------KADLCTEIVRE-------------F 430 (702)
Q Consensus 378 ~F~~~LGs~~dK~~Ri~~la~~la~~l~~-~~~~~~rAa~L~-------------KaDL~t~mV~E-------------F 430 (702)
......-.++....++..++..+|..++. +.+.+.-|+.|. |..-.+..-.+ |
T Consensus 117 ~~~~~~~~~~~hs~~~A~la~~la~~l~~~~~~~~~~agllhdiGkl~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (297)
T 1vqr_A 117 PYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAXLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFL 196 (297)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 66778999999978999999999876254268999986777530299998650587888999987457998999999996
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 45789999999862369988999999973447767778863588999999749989876510567687769688887434
Q gi|254781094|r 431 PELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATL 510 (702)
Q Consensus 431 peLQG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~ 510 (702)
-.-....|..-+..-+.+.+++++|..||-|-..++.. ...+.++++||.+|.++ +..||.-.....
T Consensus 197 ~~~h~~~g~~~l~~w~~~~~~~~~i~~hh~~~~~~~~~--~~~~~iv~iAd~~~a~~-----------~~~~~~~~~~~~ 263 (297)
T 1vqr_A 197 GVDHISFLGFLLHRWNFDDVLIESICFVRTPHAAREKV--KKSAYALAITDHLFAPH-----------DGSSPFNAKAAV 263 (297)
T ss_dssp SSCHHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTTT--HHHHHHHHHHHHHHCTT-----------TTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCH--HHHHHHHHHHHHHHHHH-----------CCCCCCCHHHHH
T ss_conf 99999999999998699999999999846985288306--78999999999999871-----------478970067888
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q ss_conf 46899983799788789630
Q gi|254781094|r 511 GIIRIILENKIDIPLSQFIE 530 (702)
Q Consensus 511 GiirIl~e~~l~l~l~~li~ 530 (702)
..++.+...+++..+.+.+.
T Consensus 264 ~~l~~l~~~~~d~~~~~~~~ 283 (297)
T 1vqr_A 264 ALLKEAKTQGINFDLNNLLS 283 (297)
T ss_dssp HHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHH
T ss_conf 87899998553787999999