HHsearch results for GI: 254781094 and protein with PDBid: 1iq0_A

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.42  E-value=0.0028  Score=40.05  Aligned_cols=107  Identities=17%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             19513889999999999855653124677777385683598999999999999999999850253899999998532788
Q gi|254781094|r  582 SSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPI  661 (702)
Q Consensus       582 ~~~~~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~I  661 (702)
                      +.+.+.-+.=+|-|+.+|+.+.....     ..+.. +.++.|++|...+..+...+..+.....-......|.+|...-
T Consensus       466 ~g~t~~YiqYa~AR~~SIlrKa~~~~-----~~~~~-~~~~~E~~L~~~l~~f~~~v~~a~~~~~P~~l~~Yl~~La~~f  539 (592)
T 1iq0_A          466 EGDTGPYVQYAHARAHSILRKAGEWG-----APDLS-QATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASW  539 (592)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHCCCC-----CCCGG-GCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             28929999999999999999754327-----87655-3898999999999758999999998688589999999999999


Q ss_pred             HHHHC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87510-------2703688689999999999999999986
Q gi|254781094|r  662 EIFFD-------QVLVNVDDREVRDNRLSLLQYIKNIILI  694 (702)
Q Consensus       662 d~FFD-------nVmVm~eD~~IR~NRL~LL~~i~~~f~~  694 (702)
                      +.|.+       +..|..+|+++++.||.|...++..+..
T Consensus       540 ~~fY~~~~~~~~~~~v~~~~~~~~~~RL~L~~a~~~vl~~  579 (592)
T 1iq0_A          540 NAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLAT  579 (592)
T ss_dssp             HHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9886257666555862068899999999999999999999