Query gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 702
No_of_seqs 174 out of 1458
Neff 6.3
Searched_HMMs 23785
Date Wed Jun 1 00:55:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781094.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 98.2 1E-05 4.3E-10 56.8 10.1 115 582-696 482-596 (607)
2 2zue_A Arginyl-tRNA synthetase 97.9 0.0004 1.7E-08 45.9 12.4 109 583-695 501-617 (629)
3 3ccg_A HD superfamily hydrolas 97.6 0.00044 1.9E-08 45.5 9.2 95 386-485 20-134 (190)
4 1iq0_A Arginyl-tRNA synthetase 97.4 0.0028 1.2E-07 40.1 11.4 107 582-694 466-579 (592)
5 3b57_A LIN1889 protein; Q92AN1 97.4 0.0014 5.8E-08 42.2 9.7 99 386-486 26-128 (209)
6 2ogi_A Hypothetical protein SA 97.2 0.0024 1E-07 40.5 8.6 94 386-484 27-139 (196)
7 2pq7_A Predicted HD superfamil 97.1 0.0062 2.6E-07 37.7 10.5 100 384-486 32-137 (220)
8 3fnr_A Arginyl-tRNA synthetase 97.1 0.0052 2.2E-07 38.2 10.0 107 586-696 337-443 (464)
9 2pjq_A Uncharacterized protein 96.9 0.0042 1.7E-07 38.9 8.2 104 382-487 27-134 (231)
10 3dto_A BH2835 protein; all alp 96.9 0.0048 2E-07 38.5 8.0 98 386-486 26-127 (223)
11 2o08_A BH1327 protein; putativ 96.7 0.012 4.9E-07 35.8 8.7 95 385-484 18-131 (188)
12 3djb_A Hydrolase, HD family; a 96.4 0.0041 1.7E-07 38.9 4.9 100 384-486 24-127 (223)
13 3gw7_A Uncharacterized protein 96.3 0.0062 2.6E-07 37.7 5.3 172 387-563 27-231 (239)
14 2qgs_A Protein Se1688; alpha-h 95.7 0.11 4.5E-06 29.2 12.3 99 386-487 26-129 (225)
15 3hc1_A Uncharacterized HDOD do 95.6 0.12 5.2E-06 28.9 16.4 233 242-530 25-286 (305)
16 1vqr_A Hypothetical protein CJ 93.5 0.36 1.5E-05 25.6 9.5 85 434-531 200-284 (297)
17 3m1t_A Putative phosphohydrola 90.0 0.88 3.7E-05 23.0 11.9 100 384-486 104-227 (275)
18 2ztg_A Alanyl-tRNA synthetase; 88.9 1.1 4.4E-05 22.5 12.0 59 472-530 333-391 (739)
19 1ynb_A Hypothetical protein AF 84.9 1.7 7.2E-05 21.0 10.1 98 383-491 36-134 (173)
20 3ljx_A MMOQ response regulator 84.6 1.8 7.5E-05 20.9 12.1 116 385-504 108-247 (288)
21 2zze_A Alanyl-tRNA synthetase; 82.7 2.1 8.8E-05 20.4 9.9 59 472-530 334-392 (752)
22 3kfl_A Methionyl-tRNA syntheta 79.1 2.8 0.00012 19.6 10.5 65 620-684 419-486 (564)
23 1xx7_A Oxetanocin-like protein 76.4 2.3 9.8E-05 20.1 3.8 100 384-494 36-145 (184)
24 1r89_A TRNA nucleotidyltransfe 76.0 3.4 0.00014 19.0 11.8 31 6-36 8-38 (437)
25 3mem_A Putative signal transdu 70.1 4.6 0.00019 18.1 14.8 107 384-496 277-413 (457)
26 3i7a_A Putative metal-dependen 67.0 5.3 0.00022 17.7 13.0 83 429-530 184-266 (281)
27 2cqz_A 177AA long hypothetical 61.3 1.6 6.6E-05 21.3 0.3 98 384-493 31-139 (177)
28 1rqg_A Methionyl-tRNA syntheta 57.7 7.7 0.00032 16.6 11.0 78 297-391 331-408 (722)
29 2e9x_A DNA replication complex 53.7 8.9 0.00037 16.1 5.2 68 593-666 81-149 (149)
30 2kih_A Matrix protein 2; S31N, 49.7 8.4 0.00035 16.3 2.4 22 496-517 2-23 (43)
31 1yfs_A Alanyl-tRNA synthetase; 47.4 11 0.00046 15.5 9.9 51 475-525 266-316 (465)
32 3h99_A Methionyl-tRNA syntheta 38.3 15 0.00063 14.6 6.8 43 626-668 429-471 (560)
33 2paq_A 5'-deoxynucleotidase YF 34.5 17 0.00073 14.2 5.7 118 374-500 20-156 (201)
34 3hy0_A Alanyl-tRNA synthetase; 29.1 21 0.00089 13.6 4.5 50 475-524 279-328 (441)
35 3kh1_A Predicted metal-depende 26.7 23 0.00097 13.3 2.3 106 382-492 37-152 (200)
36 1hyn_P BAND 3 anion transport 22.5 28 0.0012 12.8 3.0 22 202-223 104-125 (379)
37 3bkd_A Transmembrane domain of 22.4 28 0.0012 12.8 2.5 19 499-517 1-19 (26)
38 1z2z_A Probable tRNA pseudouri 22.3 28 0.0012 12.7 4.5 85 102-197 43-127 (446)
39 2gfn_A HTH-type transcriptiona 21.5 29 0.0012 12.6 2.1 24 218-241 4-27 (209)
40 2b0t_A NADP isocitrate dehydro 20.7 18 0.00077 14.0 0.2 83 9-95 8-107 (738)
41 1h7b_A Anaerobic ribonucleotid 20.4 19 0.0008 13.9 0.2 102 388-494 418-538 (605)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=98.24 E-value=1e-05 Score=56.77 Aligned_cols=115 Identities=12% Similarity=0.175 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 19513889999999999855653124677777385683598999999999999999999850253899999998532788
Q gi|254781094|r 582 SSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPI 661 (702)
Q Consensus 582 ~~~~~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~I 661 (702)
+.+.+.=+.=++-|+.+|+.++...........|.+++.+++|++|...+......+..+.....=......|..|....
T Consensus 482 ~g~t~pYvQYahARi~SIlrka~~~~~~~~~~~d~~~L~~~~e~~L~~~L~~fp~vv~~a~~~~ePh~l~~YL~~LA~~f 561 (607)
T 1f7u_A 482 EGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQV 561 (607)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 48854769999999999998720466200145553215999999999999989999999999598489999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87510270368868999999999999999998606
Q gi|254781094|r 662 EIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVI 696 (702)
Q Consensus 662 d~FFDnVmVm~eD~~IR~NRL~LL~~i~~~f~~ia 696 (702)
+.|.++..|..+|+++++-||.|...++..+..-.
T Consensus 562 ~sfY~~~~Vl~~~~e~~~aRL~L~~a~~~vl~~gL 596 (607)
T 1f7u_A 562 SSCYDVLWVAGQTEELATARLALYGAARQVLYNGM 596 (607)
T ss_dssp HHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99870187789998999999999999999999986
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=97.87 E-value=0.0004 Score=45.87 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 951388999999999985565312467777738568--------359899999999999999999985025389999999
Q gi|254781094|r 583 SAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQY--------LLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLL 654 (702)
Q Consensus 583 ~~~~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~L--------f~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L 654 (702)
.+.+.=+.=+|-|+..|+.+.+.... .++++. ..+++|++|...+......+..+.....=......|
T Consensus 501 gnt~~YiQYa~AR~~SIlrKa~~~~~----~~~~~~~~~~~~~~~l~~~E~~L~~~l~~f~~vv~~a~~~~~Ph~l~~Yl 576 (629)
T 2zue_A 501 GESAPYIQYAHARCSSILRKAEEEGI----KVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFA 576 (629)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC----CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89831066899999999997564067----88855642243233499899999999986899999999969818999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85327888751027036886899999999999999999860
Q gi|254781094|r 655 HSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIV 695 (702)
Q Consensus 655 ~~L~~~Id~FFDnVmVm~eD~~IR~NRL~LL~~i~~~f~~i 695 (702)
.+|+...+.|..+..|..+++++++.||.|...++..+..-
T Consensus 577 ~~La~~f~~fY~~~~Vl~~~~~~~~~RL~L~~a~~~vL~~g 617 (629)
T 2zue_A 577 NELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNA 617 (629)
T ss_dssp HHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999629867899899999999999999999998
No 3
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=97.60 E-value=0.00044 Score=45.55 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHH---------------HHCCHHHHHHHHHHHHHH--C
Q ss_conf 899898999999998865299988999999974---23678889---------------840345789999999862--3
Q gi|254781094|r 386 QGERVSRIRVLGKKIAQLIDADVALVDRAIVLS---KADLCTEI---------------VREFPELQGKIGKEYAVL--Q 445 (702)
Q Consensus 386 ~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~---KaDL~t~m---------------V~EFpeLQG~mG~~YA~~--~ 445 (702)
-++-+.|+..+|..||..++.|.+.+..||.|= |.-.-..+ ......+.|..|..+++. .
T Consensus 20 r~~Hs~~Va~la~~lA~~~g~d~~~~~~agLlHDIGK~~~~~~~l~~~~~~~~~~~~~e~~~~~~~H~~~ga~il~~~~~ 99 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAKKVIG 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHCC
T ss_conf 71799999999999999919599999999999861554687999999875267744999865311269999999897747
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6998899999997344776777886358899999974998
Q gi|254781094|r 446 NENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDT 485 (702)
Q Consensus 446 ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDt 485 (702)
..+++|+.||..|.. |. -|.+..+.||.+||++|.
T Consensus 100 ~~~~~i~~aI~~H~~----g~-~~~~~~~kIv~~AD~i~~ 134 (190)
T 3ccg_A 100 IDDEDVLNAIEFHTT----GR-PNMSLLEKIIYIADYIEP 134 (190)
T ss_dssp CCCHHHHHHHHTTTT----CC-SSCCHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHCC----CC-CCCCHHHHHHHHHHHHCC
T ss_conf 986999999986298----99-998989999999988477
No 4
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.42 E-value=0.0028 Score=40.05 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 19513889999999999855653124677777385683598999999999999999999850253899999998532788
Q gi|254781094|r 582 SSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPI 661 (702)
Q Consensus 582 ~~~~~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~I 661 (702)
+.+.+.-+.=+|-|+.+|+.+..... ..+.. +.++.|++|...+..+...+..+.....-......|.+|...-
T Consensus 466 ~g~t~~YiqYa~AR~~SIlrKa~~~~-----~~~~~-~~~~~E~~L~~~l~~f~~~v~~a~~~~~P~~l~~Yl~~La~~f 539 (592)
T 1iq0_A 466 EGDTGPYVQYAHARAHSILRKAGEWG-----APDLS-QATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASW 539 (592)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCCCC-----CCCGG-GCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 28929999999999999999754327-----87655-3898999999999758999999998688589999999999999
Q ss_pred HHHHC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87510-------2703688689999999999999999986
Q gi|254781094|r 662 EIFFD-------QVLVNVDDREVRDNRLSLLQYIKNIILI 694 (702)
Q Consensus 662 d~FFD-------nVmVm~eD~~IR~NRL~LL~~i~~~f~~ 694 (702)
+.|.+ +..|..+|+++++.||.|...++..+..
T Consensus 540 ~~fY~~~~~~~~~~~v~~~~~~~~~~RL~L~~a~~~vl~~ 579 (592)
T 1iq0_A 540 NAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLAT 579 (592)
T ss_dssp HHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9886257666555862068899999999999999999999
No 5
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=97.41 E-value=0.0014 Score=42.19 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHCC
Q ss_conf 8998989999999988652999889999999742367888984034578999999986236998----899999997344
Q gi|254781094|r 386 QGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENI----SCCDAIEEHLKP 461 (702)
Q Consensus 386 ~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~----~Va~aI~ehY~P 461 (702)
=++-+.|+..+|..|+..-+.|...+.-||+|== +.-.-...=++...-+...+....|.++ .|+.+|..|=..
T Consensus 26 d~~H~~RV~~~A~~Ia~~e~~D~~vv~~AAlLHD--ig~~k~~~~~~~~~~~~~~~L~~~~~~~~~i~~I~~~I~~hs~~ 103 (209)
T 3b57_A 26 DWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHD--YSDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRIIQSVSFK 103 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTT--CCC-------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8899999999999999875998999999999832--00001477265538999999987899999999999999984226
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7767778863588999999749989
Q gi|254781094|r 462 RGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 462 ~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
.+.+..-|.|..+.||+=|||||.|
T Consensus 104 ~~~~~~~p~tlEa~Iv~DADrLDal 128 (209)
T 3b57_A 104 KGKNTFKALTIEEKIVQDADRLDAI 128 (209)
T ss_dssp -------CCCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 6888889758899999868887113
No 6
>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=97.16 E-value=0.0024 Score=40.52 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHHH--------------HHCCHHHHHHHHHHHHHHC-C-
Q ss_conf 899898999999998865299988999999974---23678889--------------8403457899999998623-6-
Q gi|254781094|r 386 QGERVSRIRVLGKKIAQLIDADVALVDRAIVLS---KADLCTEI--------------VREFPELQGKIGKEYAVLQ-N- 446 (702)
Q Consensus 386 ~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~---KaDL~t~m--------------V~EFpeLQG~mG~~YA~~~-g- 446 (702)
-++-+.|+..+|..+|..++.|.+.+..||.|= |.-.-..+ -....-..+.+|..++... |
T Consensus 27 r~~Hs~~Va~lA~~lA~~~g~d~~~~~~AgLLHDIGK~~~~~~~l~~~~~~~~~~d~~~~~~~~~H~~~g~~~l~~~~~~ 106 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQEDLAI 106 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 74999999999999999909499999999999970465685999998875489855988600123899999999866289
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99889999999734477677788635889999997499
Q gi|254781094|r 447 ENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLD 484 (702)
Q Consensus 447 e~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlD 484 (702)
.+++|+.||+.|- .|. -|.+..+.||.+||++|
T Consensus 107 ~~~~i~~aI~~H~----~g~-~~~~~~~kIv~~AD~l~ 139 (196)
T 2ogi_A 107 KDQDILAAIAKHT----VGS-AQMSTLDKIVYVADYIE 139 (196)
T ss_dssp CCHHHHHHHHTTT----TCC-SSCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHC----CCC-CCCCHHHHHHHHHHHCC
T ss_conf 8199999999748----899-99898999999897527
No 7
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=97.13 E-value=0.0062 Score=37.73 Aligned_cols=100 Identities=19% Similarity=0.120 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHCCCCH----HHHHHHHH
Q ss_conf 1389989899999999886529998899999997423678889840--34578999999986236998----89999999
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVRE--FPELQGKIGKEYAVLQNENI----SCCDAIEE 457 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~E--FpeLQG~mG~~YA~~~ge~~----~Va~aI~e 457 (702)
|-=++-+.|+..+|..|+..-+.|...+.-||+|==..-.-..+.. -.+.--.+...+....|.++ .|+.+|..
T Consensus 32 sHd~~H~~RV~~~A~~Ia~~e~~D~~vv~lAALLHDIg~~k~~~~~~~h~~~~a~~a~~~L~~~~~~~~~i~~I~~~I~~ 111 (220)
T 2pq7_A 32 AHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVDHAESGAEYASGLLPTMGFDISFVAEVSKAIRS 111 (220)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHHHCCCHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 76889999999999999988599999999999985540386426753489999999999998779999999999999998
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 73447767778863588999999749989
Q gi|254781094|r 458 HLKPRGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 458 hY~P~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
| .+++..-|.|+.+.||.-|||||.|
T Consensus 112 h---s~~~~~~~~sle~~Iv~DADrLDal 137 (220)
T 2pq7_A 112 H---RYSGGLTPTSLTGKILQDADRLDAI 137 (220)
T ss_dssp C---C-----CCCSHHHHHHHHHHHGGGS
T ss_pred C---CCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 0---7655777688599999999977122
No 8
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=97.12 E-value=0.0052 Score=38.24 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 38899999999998556531246777773856835989999999999999999998502538999999985327888751
Q gi|254781094|r 586 GEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFF 665 (702)
Q Consensus 586 ~~~l~~a~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FF 665 (702)
+.-+.=++.|+..|+.+....... ....+...+ ++.|.+|...+..+...+..+...-.=......|.+|....+.|.
T Consensus 337 ~~YiqYa~aR~~SIlrk~~~~~~~-~~~~~~~~l-~~~e~~L~~~l~~fp~vl~~a~~~~~P~~l~~Yl~~La~~Fn~fY 414 (464)
T 3fnr_A 337 VYYINYAHARIHQVFAKAGKKIDD-VMKADLQSL-NQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFY 414 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTT-STTCCCTTC-CHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999971534331-112554218-988999999998489999999983781489999999999999887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0270368868999999999999999998606
Q gi|254781094|r 666 DQVLVNVDDREVRDNRLSLLQYIKNIILIVI 696 (702)
Q Consensus 666 DnVmVm~eD~~IR~NRL~LL~~i~~~f~~ia 696 (702)
++..|..++. ++-||.|...++..+..-.
T Consensus 415 ~~~~Vl~~~~--~~~RL~L~~~~~~vl~~gl 443 (464)
T 3fnr_A 415 NENKVVGSAN--ENDLLKLFSLVALSIKTAF 443 (464)
T ss_dssp HHCCCTTSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 1389899979--9999999999999999852
No 9
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=96.94 E-value=0.0042 Score=38.90 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHH
Q ss_conf 551389989899999999886529998899999997423678889840345789999999862369988----9999999
Q gi|254781094|r 382 KIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDAIEE 457 (702)
Q Consensus 382 ~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~aI~e 457 (702)
.-|==++-+.|+..+|..|+..-+.|...+.-||+|==+. -.-...=|+..+-+-..+....|.+++ |+.+|..
T Consensus 27 ~s~Hd~~Hv~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDi~--d~k~~~~~~~~~~~~~~~L~~~~~~~~~i~~I~~iI~~ 104 (231)
T 2pjq_A 27 HSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVI--DDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDH 104 (231)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--C---------CHHHHHHHHHTTTCCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8867879999999999999988499999999999997104--64467998889999999988289898999999999996
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 734477677788635889999997499898
Q gi|254781094|r 458 HLKPRGPLENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 458 hY~P~~~~d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
|-.-......-|.|..+.||.-|||||.|-
T Consensus 105 ~s~s~~~~~~~p~tlEa~Iv~DADrLDalG 134 (231)
T 2pjq_A 105 MSFSKSFNGPQKLSLEGQVVQDADRLDAIG 134 (231)
T ss_dssp CCTGGGGGCCCCCCSHHHHHHHHHHHTTSH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 998703678998679999999888885424
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=96.87 E-value=0.0048 Score=38.46 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHCC
Q ss_conf 89989899999999886529998899999997423678889840345789999999862369988----99999997344
Q gi|254781094|r 386 QGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENIS----CCDAIEEHLKP 461 (702)
Q Consensus 386 ~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~----Va~aI~ehY~P 461 (702)
=++-+.|+..+|..|+..-+.|...+.-||+|==+ ...=..+-|+....+..-+....|.+++ |+.+|..|-..
T Consensus 26 d~~H~~RV~~~A~~Ia~~e~~D~~vv~lAAlLHDi--g~~k~~~~~~~~~~~~~~~L~~~g~~~~~i~~V~~~I~~~s~s 103 (223)
T 3dto_A 26 DWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDL--IDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIINTISFK 103 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHST--TC-------CHHHHHHHHHHHTTTCCHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88999999999999998848889999999997310--2244577567799999999987799999999999999985023
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7767778863588999999749989
Q gi|254781094|r 462 RGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 462 ~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
.. ...-|.|+.+.||.-|||||.|
T Consensus 104 ~~-~~~~~~t~e~~Iv~DADrLDal 127 (223)
T 3dto_A 104 GG-HGQSLATREAMVVQDADRLDAL 127 (223)
T ss_dssp --------CCHHHHHHHHHHHGGGS
T ss_pred CC-CCCCCCCHHHHHHHHHHHHHHC
T ss_conf 58-8999888899999989998754
No 11
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=96.66 E-value=0.012 Score=35.84 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHH--------------HHHHCCHHHHHHHHHHHHHHC--
Q ss_conf 389989899999999886529998899999997---4236788--------------898403457899999998623--
Q gi|254781094|r 385 TQGERVSRIRVLGKKIAQLIDADVALVDRAIVL---SKADLCT--------------EIVREFPELQGKIGKEYAVLQ-- 445 (702)
Q Consensus 385 s~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L---~KaDL~t--------------~mV~EFpeLQG~mG~~YA~~~-- 445 (702)
.-++-+.|+..+|..+|..++.+.+.+.-||.| +|.-.-. .+..+..-..+.+|..++...
T Consensus 18 ~r~~Hs~~Va~~A~~lA~~~gld~~~~~~agLlHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~~~ 97 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVG 97 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 67499999999999999980939999999999987235578799999987435513788861012479999999975648
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 699889999999734477677788635889999997499
Q gi|254781094|r 446 NENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLD 484 (702)
Q Consensus 446 ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlD 484 (702)
..+++|+.||+.|= +| .-|.+..+.++.+||+++
T Consensus 98 ~~~~~v~~aI~~H~----~g-~~~~~~~~~Iv~~AD~i~ 131 (188)
T 2o08_A 98 IEDEDVLQAIRFHT----TG-RPNMSLLEKIIFLADYIE 131 (188)
T ss_dssp CCCHHHHHHHHTTT----TC-CTTCCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHC----CC-CCCCCHHHHHHHHHHHHC
T ss_conf 98799999999858----79-899887999999999814
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=96.36 E-value=0.0041 Score=38.94 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHH
Q ss_conf 138998989999999988652999889999999742367888984034578999999986236998----8999999973
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENI----SCCDAIEEHL 459 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~----~Va~aI~ehY 459 (702)
|-=++-+.|+..+|..|+...+.|...+.-||+|= |....--.+=++..-.+-.-+....|.++ .|+.+|..|=
T Consensus 24 ~Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~~AAlLH--Digd~k~~~~~~~~~~~a~~~L~~~g~~~~~i~~V~~~I~~hS 101 (223)
T 3djb_A 24 GHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLH--DVADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANMS 101 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTH--HHHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 65889999999999999988599899999999996--4154123524566799999999887989999999999999847
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 447767778863588999999749989
Q gi|254781094|r 460 KPRGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 460 ~P~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
..... ..-|.|..|.||.=|||||.|
T Consensus 102 ~s~~~-~~~~~tlE~~Iv~DADrLDal 127 (223)
T 3djb_A 102 YKGGH-GGKVESIEGKLVQDADRLDAL 127 (223)
T ss_dssp ------------HHHHHHHHHHHTTTS
T ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf 66789-999999899999989999750
No 13
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=96.27 E-value=0.0062 Score=37.74 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-H--HHHHHHCCHHHHHHHHHHHHHH--CCCC----HHHHHHHHH
Q ss_conf 99898999999998865299988999999974236-7--8889840345789999999862--3699----889999999
Q gi|254781094|r 387 GERVSRIRVLGKKIAQLIDADVALVDRAIVLSKAD-L--CTEIVREFPELQGKIGKEYAVL--QNEN----ISCCDAIEE 457 (702)
Q Consensus 387 ~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaD-L--~t~mV~EFpeLQG~mG~~YA~~--~ge~----~~Va~aI~e 457 (702)
++-+.|+..+|..|+..-+.|...+.-||+|==.. . .+.--..-....+.+....... .|.+ ..|+.+|..
T Consensus 27 ~~Hi~RV~~~A~~Ia~~e~~D~~vv~lAALLHDIg~~k~~~~~~~~~~~~~a~~a~~lL~~~~~~~~~~~i~~I~~aI~~ 106 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCHAIAA 106 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC--------CCSSHHHHHHHHHHHHHHTTSSCTTTTTSTTTGGGS
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 89999999999999987498899999999972455100268832047888999999999865138999999999999997
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-----HHHHC----CCCCCCCCCHHHHHHHHHHH---HHHHHHCCCCCCH
Q ss_conf 734477677788635889999997499898-----76510----56768776968888743446---8999837997887
Q gi|254781094|r 458 HLKPRGPLENVPTNKISITVSLADKLDTLI-----NFWAI----NEKPSGSKDPYALRRATLGI---IRIILENKIDIPL 525 (702)
Q Consensus 458 hY~P~~~~d~lP~~~~g~ilsiaDKlDtl~-----g~f~i----g~~PTGS~DPfaLRR~a~Gi---irIl~e~~l~l~l 525 (702)
| .++...-|.|+.+.||.-|||||.|= =+|.. |.......||++..|..-.. |.=.-++-+.|
T Consensus 107 H---s~~~~~~~~t~Ea~IVqDADrLDalGAiGIaR~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~Hf~eKL~~L-- 181 (239)
T 3gw7_A 107 H---SFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTKLLKL-- 181 (239)
T ss_dssp S---CTTSCCCCCSHHHHHHHHHTGGGGSHHHHHHHHHHHHHHTTCCCSGGGGGGGTSCCCCC--CHHHHHTTTGGGT--
T ss_pred H---CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH--
T ss_conf 1---58789998888999999878885310478999999811247766686420332055342788999999999967--
Q ss_pred HHHHHH-------HHHHHHHH---HHHHHHHH--HCCCCHHHHHHHHHCC
Q ss_conf 896303-------64999999---99999876--3388878998854168
Q gi|254781094|r 526 SQFIED-------QNLILFFH---DRLKLYLH--DRDIRHDLIEAILRPE 563 (702)
Q Consensus 526 ~~li~~-------~~l~~Fi~---~Rl~~~L~--e~G~~~DiI~AVl~~~ 563 (702)
.+.+.- +.=..|+. +++..-+. ..|.++.++++--+.+
T Consensus 182 ~~~m~T~tgr~iA~~R~~~m~~Fl~~~~~E~~g~~~~~~~~~~~~~~~~~ 231 (239)
T 3gw7_A 182 PQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEGVDHKVIDAFSSAG 231 (239)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCTTTHHHHSCTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf 98688989999999999999999999999978572147799998721203
No 14
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: a.211.1.1
Probab=95.71 E-value=0.11 Score=29.23 Aligned_cols=99 Identities=16% Similarity=0.045 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHC
Q ss_conf 89989899999999886529-99889999999742367888984034578999999986236998----89999999734
Q gi|254781094|r 386 QGERVSRIRVLGKKIAQLID-ADVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENI----SCCDAIEEHLK 460 (702)
Q Consensus 386 ~~dK~~Ri~~la~~la~~l~-~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~mG~~YA~~~ge~~----~Va~aI~ehY~ 460 (702)
=++-+.|+..+|..|+..-+ .+...+.-||+|==. .-. -....+..--+.+.+....|.++ .|+.+|..|=.
T Consensus 26 d~~H~~RV~~~A~~Ia~~e~~~D~~vv~~AAlLHDi--gd~-k~~~~~~~~~~a~~~L~~~g~~~~~i~~V~~~I~~hs~ 102 (225)
T 2qgs_A 26 DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDT--VDS-KLTDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHMSY 102 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTT--TCC-SSSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC--CCC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 879999999999999988498859999999998731--321-23451678999999998869999999999999997024
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 477677788635889999997499898
Q gi|254781094|r 461 PRGPLENVPTNKISITVSLADKLDTLI 487 (702)
Q Consensus 461 P~~~~d~lP~~~~g~ilsiaDKlDtl~ 487 (702)
-.+.....|.|+.+.||+=|||||.|-
T Consensus 103 ~~~~~~~~p~t~e~~Iv~DADrLDalG 129 (225)
T 2qgs_A 103 RAGKNNHVKLSIDGEIVRDADRLDAIG 129 (225)
T ss_dssp ------CCCCCHHHHHHHHHHHHTTSH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 668889998788999999888888643
No 15
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=95.55 E-value=0.12 Score=28.85 Aligned_cols=233 Identities=21% Similarity=0.161 Sum_probs=124.2
Q ss_pred EECCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCHHHHHHHHH-HHCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 2146667887887440898468883077771289899999998-400113655368861324898505776554302456
Q gi|254781094|r 242 ELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIK-TNQKCFVTRTREGVLANCFILVSNIQASDGGAAIVQ 320 (702)
Q Consensus 242 ~~~~d~~Ll~Ev~~LvE~P~~~~G~F~~~fL~lP~evl~~~m~-~hQkyf~~~~~~g~l~~~Fi~v~N~~~~~~~~~v~~ 320 (702)
.+..-+..+-++..+++-|.+=+...- +-..-.+-+-..+++ .|.=||.. .++ |.+. . ...+.-
T Consensus 25 ~LP~lP~v~~~l~~~l~~~~~~~~~la-~~I~~Dp~Lta~lLr~aNSa~y~~---~~~-------I~si--~--~Ai~~L 89 (305)
T 3hc1_A 25 ELPTVPDIVLRIAGKLNDPDVAIDEVA-DLLLQDQVLTARVVHLANSPLYSA---ARP-------ISSI--R--DAVIYL 89 (305)
T ss_dssp SCCCCCHHHHHHHHHTTCTTCCHHHHH-HHHTTCHHHHHHHHHHHHSHHHHT---TSC-------CCSH--H--HHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHH-HHHHHCHHHHHHHHHHHCCHHHCC---CCC-------CCCH--H--HHHHHH
T ss_conf 389972999999998749999999999-999989999999999966252189---999-------8989--9--999885
Q ss_pred HHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899787642259--9985030001111111111001122013788998842100230313455138998989999999
Q gi|254781094|r 321 GNSRVVAARLEDAL--HFWKRDQNNLPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGK 398 (702)
Q Consensus 321 GnerVl~ARL~DA~--FF~~~D~~~~~~~~~~~~~~~~~~~dlk~~L~~~~~~L~~~~v~F~~~LGs~~dK~~Ri~~la~ 398 (702)
|-+.|-+-=++-+. .| ..+ .-.| .+..+.........++.
T Consensus 90 G~~~v~~lv~~~~~~~~~-~~~-----------------------------------~~~~--~~~~~w~hS~~~A~~a~ 131 (305)
T 3hc1_A 90 GLDLLREAIFTCAIVDLF-KTG-----------------------------------KGPL--NRSTLWAHSLGVARIAK 131 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH-HSC-----------------------------------CCSS--CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-CCC-----------------------------------CCHH--HHHHHHHHHHHHHHHHH
T ss_conf 879999898899999986-467-----------------------------------5302--68999999999999999
Q ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHH-------------HHHHH---------C---CHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9886529-998899999997423678-------------88984---------0---34578999999986236998899
Q gi|254781094|r 399 KIAQLID-ADVALVDRAIVLSKADLC-------------TEIVR---------E---FPELQGKIGKEYAVLQNENISCC 452 (702)
Q Consensus 399 ~la~~l~-~~~~~~~rAa~L~KaDL~-------------t~mV~---------E---FpeLQG~mG~~YA~~~ge~~~Va 452 (702)
.+|..++ .+.+.+.-|+.|.-.-.+ ...+. | |---++.+|+.-+++=|.+++++
T Consensus 132 ~lA~~~~~~~~~~a~~aGLLhdiG~l~l~~~~~~~~~~i~~~~~~~~~~~~~~E~~~~g~~h~~ig~~l~~~W~lP~~i~ 211 (305)
T 3hc1_A 132 LIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHCEVGFALAKRWSLNEFIC 211 (305)
T ss_dssp HHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHHSSCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99987378999999999999814999997765798999999986579998999999968799999999999869899999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999997344776777886358899999974998987651056768776968888743446899983799788789630
Q gi|254781094|r 453 DAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE 530 (702)
Q Consensus 453 ~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~l~~li~ 530 (702)
++|+.|+.|....++ .....++|.+||.+=...|+-.-|..|...-.|..-+..+.+.++-.+. ..+++...+++
T Consensus 212 ~~i~~hh~p~~~~~~--~~~l~~iv~lA~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~~l~~ 286 (305)
T 3hc1_A 212 DTILYHHDIEAVPYK--QAAIVAMVAFADEYCTLRRLGFEGHKPVDSVRTLLENHPSWGVIRRSLG-GSDFDEKLIVA 286 (305)
T ss_dssp HHHHHTTCGGGCSSS--CCHHHHHHHHHHHHHHHTTSCCSCCCCCSCHHHHHHHCTHHHHHHHHST-TCCCCHHHHHH
T ss_pred HHHHHHCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCC-CCHHHHHHHHH
T ss_conf 999986692327856--1139699999999999808887888877203566530157999997648-52311999999
No 16
>1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=93.50 E-value=0.36 Score=25.62 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999862369988999999973447767778863588999999749989876510567687769688887434468
Q gi|254781094|r 434 QGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGII 513 (702)
Q Consensus 434 QG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~Gii 513 (702)
.+.+|++.|++=|.++.+++||..|..|..+.+.. .....+|.+||-+ ++ +.+...|++.+. +...+
T Consensus 200 h~~ig~~l~~~W~lP~~i~~ai~~hh~P~~~~~~~--~~~~~~v~lA~~l---~~-------~~~~~~~~~~~~-~~~~l 266 (297)
T 1vqr_A 200 HISFLGFLLHRWNFDDVLIESICFVRTPHAAREKV--KKSAYALAITDHL---FA-------PHDGSSPFNAKA-AVALL 266 (297)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTTT--HHHHHHHHHHHHH---HC-------TTTTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCH--HHHHHHHHHHHHH---HH-------HHCCCCCCHHHH-HHHHH
T ss_conf 99999999998699999999999858985388416--7898999999999---98-------714689800667-88878
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 999837997887896303
Q gi|254781094|r 514 RIILENKIDIPLSQFIED 531 (702)
Q Consensus 514 rIl~e~~l~l~l~~li~~ 531 (702)
.-....++++++..++++
T Consensus 267 ~~~~~~~l~~~~~~l~~~ 284 (297)
T 1vqr_A 267 KEAKTQGINFDLNNLLSK 284 (297)
T ss_dssp HHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHH
T ss_conf 999985648879999998
No 17
>3m1t_A Putative phosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE GOL; 1.62A {Shewanella amazonensis}
Probab=90.00 E-value=0.88 Score=23.01 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-------------HHHHHHCCHHH-----------HHHHHH
Q ss_conf 138998989999999988652999889999999742367-------------88898403457-----------899999
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKADL-------------CTEIVREFPEL-----------QGKIGK 439 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~KaDL-------------~t~mV~EFpeL-----------QG~mG~ 439 (702)
..+.+........+.+++...+.+.+.+.-|+.|.-.-. .+..+.+-+.+ ...+|.
T Consensus 104 ~~~w~~s~~~A~~a~~la~~~~~~~~~a~~agLLhdiG~l~l~~~~~~~~~~i~~~~~~~~~~~~~E~~~~g~~h~~ig~ 183 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELLGYDNAEIGA 183 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHH
T ss_conf 99999999999999999987023699999988887789999987667899999998727998899999997888999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99862369988999999973447767778863588999999749989
Q gi|254781094|r 440 EYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTL 486 (702)
Q Consensus 440 ~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl 486 (702)
..+++=|.+++++++|..|..|..+. |.+....+|.+||.+-..
T Consensus 184 ~l~~~W~lp~~i~~~I~~hh~p~~~~---~~~~l~~iv~lA~~la~~ 227 (275)
T 3m1t_A 184 LLAQSWKFTPHLVKGIQFQNHPKSAE---PYSKLAGMLAMAKQIAAD 227 (275)
T ss_dssp HHHHHTTCCHHHHHHHHTTTCGGGCS---SCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHHH
T ss_conf 99987089899999999865955578---887799999999999985
No 18
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=88.89 E-value=1.1 Score=22.47 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 58899999974998987651056768776968888743446899983799788789630
Q gi|254781094|r 472 KISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE 530 (702)
Q Consensus 472 ~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~l~~li~ 530 (702)
+..++-.|||-+=+++=+++=|..||...--|=|||-.-=.+|...+.++..+|.++++
T Consensus 333 ~~~~~rvIADH~Ra~~f~IaDGv~PSN~GrGYvlRrilRRa~r~~~~lg~~~~l~~lv~ 391 (739)
T 2ztg_A 333 PLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGLDLYDLVE 391 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 31001214289888898860575567677428999999999987655066522788999
No 19
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=84.91 E-value=1.7 Score=21.02 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 51389989899999999886529998899999997423-67888984034578999999986236998899999997344
Q gi|254781094|r 383 IGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA-DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKP 461 (702)
Q Consensus 383 LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~Ka-DL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~ehY~P 461 (702)
-=|+.|-+-|+.-++..++...+.+..+..|+..+|-. ||+=-.++-.|..+- .| ...+++-+.....-
T Consensus 36 ~EsVAeHs~r~A~ia~~la~~~~~~~~d~~k~~~maL~HDl~E~~~GDi~~~~k----~~---~~~~e~~~~e~~~~--- 105 (173)
T 1ynb_A 36 PESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHKIAR----RY---VSCDEEGAREEQLS--- 105 (173)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCCCCTTGG----GT---CCCCHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HC---CCCCHHHHHHHHHH---
T ss_conf 876899999999999998877388500299999999998989987389856667----40---34757878999999---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 776777886358899999974998987651
Q gi|254781094|r 462 RGPLENVPTNKISITVSLADKLDTLINFWA 491 (702)
Q Consensus 462 ~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ 491 (702)
...-+--+|+.+.++.-+||+|++.-.+-
T Consensus 106 -~~eye~~~t~Ea~~vk~~Dkle~~lqa~e 134 (173)
T 1ynb_A 106 -WMESKPDFSDVEVYVSDADKLELAFQGVE 134 (173)
T ss_dssp -TCSSCCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -98874146689999999989999999999
No 20
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A
Probab=84.55 E-value=1.8 Score=20.91 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH----------HHHHH----------HC---CHHHHHHHHHH
Q ss_conf 389989899999999886529-99889999999742367----------88898----------40---34578999999
Q gi|254781094|r 385 TQGERVSRIRVLGKKIAQLID-ADVALVDRAIVLSKADL----------CTEIV----------RE---FPELQGKIGKE 440 (702)
Q Consensus 385 s~~dK~~Ri~~la~~la~~l~-~~~~~~~rAa~L~KaDL----------~t~mV----------~E---FpeLQG~mG~~ 440 (702)
.+.........++..++...+ .+.+.+.-|+.|.-.-- ..++. .| |---.+.+|..
T Consensus 108 ~~w~hs~~~A~~a~~la~~~~~~~~~~a~~aGLLhdiG~l~l~~~~p~~~~~~~~~~~~~~~~~~E~~~~G~~h~~ig~~ 187 (288)
T 3ljx_A 108 AYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERFATDHDELTRM 187 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999999999984899999999989998727999978676999999987437774899999988899999999
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 9862369988999999973447767778863588999999749989876510567687769688
Q gi|254781094|r 441 YAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYA 504 (702)
Q Consensus 441 YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfa 504 (702)
.+++=|.+++++++|+-|..|....+. +....+.+|++|+.+ +..+..|....+.-+|+-
T Consensus 188 l~~~W~lP~~i~~~i~~hh~~~~~~~~-~~~~l~~~v~lA~~l---a~~~~~~~~~~~~~~~~~ 247 (288)
T 3ljx_A 188 LLTDWGFPQVFIDALQLSQQDEIRDEG-RTGRFARQLALAQHI---ADHRLAEEPRRAALSPLL 247 (288)
T ss_dssp HHHHTTCCHHHHHHHHHTTSSCCCCCH-HHHHHHHHHHHHHHH---HHHHTC------CCCHHH
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHH---HHHHCCCCCCHHHHCHHH
T ss_conf 999859799999999986786546653-205799999999999---986345998111014037
No 21
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=82.69 E-value=2.1 Score=20.41 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 58899999974998987651056768776968888743446899983799788789630
Q gi|254781094|r 472 KISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIE 530 (702)
Q Consensus 472 ~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~l~~li~ 530 (702)
+..++-.|||-+=+++=+++=|..||-..--|=|||-.-=.+|.....+++.++.+++.
T Consensus 334 ~~~~~~vIaDH~Ral~f~I~DGv~PSN~grGYvlRrilRRA~r~~~~lg~~~~l~~lv~ 392 (752)
T 2zze_A 334 PYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVPLSEIVA 392 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCCEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 54441374308999999986578534455327899999999999986288676899999
No 22
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=79.08 E-value=2.8 Score=19.60 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHH
Q ss_conf 5989999999999999999998502538999999985327888751027---0368868999999999
Q gi|254781094|r 620 LLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQV---LVNVDDREVRDNRLSL 684 (702)
Q Consensus 620 ~~~~Ek~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnV---mVm~eD~~IR~NRL~L 684 (702)
.++..+.+...+..+...+.+++++-+|..++..+..+..-+|.|++.. ..+.+|+.-++.=|..
T Consensus 419 ~~~~d~~il~~~~~~~~~v~~~~e~~~f~~a~~~i~~~~~~~N~yi~~~~pw~l~k~d~~~~~~vl~~ 486 (564)
T 3kfl_A 419 YSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYV 486 (564)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHH
T ss_conf 11578877888998999999999867999999999999999999999769864426899999999999
No 23
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=76.44 E-value=2.3 Score=20.09 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 1389989899999999886529-----99889999999742-36788898403457899999998623699889999999
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLID-----ADVALVDRAIVLSK-ADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEE 457 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~-----~~~~~~~rAa~L~K-aDL~t~mV~EFpeLQG~mG~~YA~~~ge~~~Va~aI~e 457 (702)
=|+.+-+-|+.-+|..++..++ .|... +..+|- -||+--.++..|.- +..|... ...+...-+
T Consensus 36 EsVAeHs~~vA~ia~~la~~~~~~g~~vd~~k---~~~maL~HDl~E~~~GDip~~----~~~~~~~----~~~e~~~~~ 104 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEK---ALKIAIIHDLGEAIITDLPLS----AQKYLNK----EEAEAKALK 104 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH---HHHHHHHTTTTHHHHCCCCHH----HHTTSCH----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHCCCCCCC----HHHHHHH----HHHHHHHHH
T ss_conf 75999999999999999999865455769999---999999986499881799850----2442359----999999998
Q ss_pred HHCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 73447767----77886358899999974998987651056
Q gi|254781094|r 458 HLKPRGPL----ENVPTNKISITVSLADKLDTLINFWAINE 494 (702)
Q Consensus 458 hY~P~~~~----d~lP~~~~g~ilsiaDKlDtl~g~f~ig~ 494 (702)
..+|.+.. -+--+|+.+.+|..+||+|+++-++--..
T Consensus 105 ~l~~e~~~l~~Eye~~~t~Ea~~vk~~Dkle~~lqa~~y~~ 145 (184)
T 1xx7_A 105 DVLPEYTELFEEYSKALTLEGQLVKIADKLDMIIQAYEYEL 145 (184)
T ss_dssp HHCGGGHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75366898899988468889999999998999999999988
No 24
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=76.02 E-value=3.4 Score=19.02 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=20.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6400201698999999999999999999976
Q gi|254781094|r 6 LEIYSEEIPARMQHKAAEDLSIILIGLLKEE 36 (702)
Q Consensus 6 lEIgtEElPa~~~~~~~~~l~~~~~~~l~~~ 36 (702)
-|+.-+=.|...-....+++.+.+...+++.
T Consensus 8 ~evl~~i~Ps~eE~~~~~~~~~~l~~~l~~~ 38 (437)
T 1r89_A 8 EKALELVIPDEEEVRKGREAEEELRRRLDEL 38 (437)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999753989999999999999999999961
No 25
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=70.09 E-value=4.6 Score=18.09 Aligned_cols=107 Identities=11% Similarity=-0.060 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHH-------------HHHHHH----------H---CCHHH
Q ss_conf 1389989899999999886529----9988999999974236-------------788898----------4---03457
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLID----ADVALVDRAIVLSKAD-------------LCTEIV----------R---EFPEL 433 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~----~~~~~~~rAa~L~KaD-------------L~t~mV----------~---EFpeL 433 (702)
-.+.....+...++..++.+++ .+.+.+.-|+.|.-.- ...... . -|---
T Consensus 277 ~~~w~~s~~~A~~a~~la~~~~~~~~~~~~~aylaGLLhdiG~l~l~~~~p~~~~~i~~~~~~~~~~~~~~~E~~~lG~~ 356 (457)
T 3mem_A 277 VDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIEHYLLGIT 356 (457)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHHHHSHHHHHHHHHHHHHCTTSCHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999999620344478899885059888999999874799999999987279999999999986689
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999998623699889999999734477677788635889999997499898765105676
Q gi|254781094|r 434 QGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKP 496 (702)
Q Consensus 434 QG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~P 496 (702)
+..+|...+++=|.+++++++|+.|..|...++ .+....++.+|+.+ +...+.|..+
T Consensus 357 h~~iga~l~~~W~lP~~i~~ai~~hh~p~~~~~---~~~l~~lv~lA~~l---~~~~~~~~~~ 413 (457)
T 3mem_A 357 REQIAAQLMENWGMPDEVTLAIRYQKNPAYDGP---HNVYARLLWLGRQL---LTERGVALGA 413 (457)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTCTTCCST---THHHHHHHHHHHHH---HHHTTCSSSC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHH---HHHCCCCCCC
T ss_conf 999999999986999999999997479233888---74899999999999---9841878777
No 26
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=67.03 E-value=5.3 Score=17.68 Aligned_cols=83 Identities=8% Similarity=0.030 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 03457899999998623699889999999734477677788635889999997499898765105676877696888874
Q gi|254781094|r 429 EFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRA 508 (702)
Q Consensus 429 EFpeLQG~mG~~YA~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~ 508 (702)
.|...++.+|..-+++=|.+++++++|..|-.|...++. .....++.+|+.+- +.... | +.+ +
T Consensus 184 ~~g~~h~~ig~~l~~~W~lp~~i~~~i~~hh~~~~~~~~---~~l~~iv~lA~~~~---~~~~~-----g--~~~--~-- 246 (281)
T 3i7a_A 184 LVRKMQGPIGRAVLKSWDFAPEVMEVVERWADLPYLGDH---VSYLDFIRAAAFYT---GELRA-----G--NEL--E-- 246 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTCTTCCCSS---CCHHHHHHHHHHHH---TSSCC-----G--GGH--H--
T ss_pred HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHH---HHCCC-----C--CCC--C--
T ss_conf 974347889999999759899999999987484436764---25999999999998---66278-----8--775--4--
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 3446899983799788789630
Q gi|254781094|r 509 TLGIIRIILENKIDIPLSQFIE 530 (702)
Q Consensus 509 a~GiirIl~e~~l~l~l~~li~ 530 (702)
+.+......+++++-.++..
T Consensus 247 --~~~~~~~~~~l~~~~~~l~~ 266 (281)
T 3i7a_A 247 --QRLDVFVKRGLPVSPEDLGS 266 (281)
T ss_dssp --HHHHHHHTTTCSCSHHHHTS
T ss_pred --CCCHHHHHHCCCCCHHHHHH
T ss_conf --14059998479999788736
No 27
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3}
Probab=61.34 E-value=1.6 Score=21.27 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHH--------CCCCHHHH
Q ss_conf 1389989899999999886529--998899999997423-678889840345789999999862--------36998899
Q gi|254781094|r 384 GTQGERVSRIRVLGKKIAQLID--ADVALVDRAIVLSKA-DLCTEIVREFPELQGKIGKEYAVL--------QNENISCC 452 (702)
Q Consensus 384 Gs~~dK~~Ri~~la~~la~~l~--~~~~~~~rAa~L~Ka-DL~t~mV~EFpeLQG~mG~~YA~~--------~ge~~~Va 452 (702)
=|+.+-+-|+.-++..++.... ...-+..|++.+|-. ||+=-.++-.|.-. .+|+.. ....++..
T Consensus 31 EsVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~E~~~GDi~~~~----k~~~~~~~~e~~~~~~l~~e~~ 106 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAIITDIPLSA----QEFVDKDKAEALVFKKVFPEFY 106 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCTTT----TTTSCHHHHHHHHHHHTCGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHHCCHHHH
T ss_conf 649999999999999999898773567699999999998348999807899752----2045899999998887027589
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999734477677788635889999997499898765105
Q gi|254781094|r 453 DAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAIN 493 (702)
Q Consensus 453 ~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig 493 (702)
....| | +-.+|+.+.++..+||+|+++-+..-.
T Consensus 107 ~l~~e-y-------e~~~t~Ea~~vk~~Dkl~~~lqa~~y~ 139 (177)
T 2cqz_A 107 ELYRE-Y-------QECSSPEAQLVRIADKLDMILQAYQYE 139 (177)
T ss_dssp HHHHH-H-------HHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-H-------HCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999-8-------758978999999999999999999999
No 28
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=57.71 E-value=7.7 Score=16.57 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=34.9
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 86132489850577655430245678899787642259998503000111111111100112201378899884210023
Q gi|254781094|r 297 GVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLDLSKPLDQRMARLDMLD 376 (702)
Q Consensus 297 g~l~~~Fi~v~N~~~~~~~~~v~~GnerVl~ARL~DA~FF~~~D~~~~~~~~~~~~~~~~~~~dlk~~L~~~~~~L~~~~ 376 (702)
.-+.+.|+..-+...+-...+|+...+ ++.--=+||.=||=-= ..-...|..-+.++...+..
T Consensus 331 ~v~~hg~l~~~G~KMSKS~GNvIdp~d-li~~ygaD~lR~~l~~-------------~~~~~~d~df~~~~~~~~~n--- 393 (722)
T 1rqg_A 331 DIPANEYLTLEGKKFSTSRNWAIWVHE-FLDVFPADYLRYYLTT-------------IMPETRDSDFSFSDFKVRIN--- 393 (722)
T ss_dssp BCCEECCEEETTEECBTTTTBSCBHHH-HTTTSCHHHHHHHHHH-------------TCCSSSCEEECHHHHHHHHH---
T ss_pred EEEECCEEEECCCEEECCCCCCCCHHH-HHHHCCHHHHHHHHHH-------------HCCCCCCCCHHHHHHHHHHH---
T ss_conf 898641896168541103787378899-8750582789999997-------------08887775302789999988---
Q ss_pred EEHHHHHHHHHHHHH
Q ss_conf 031345513899898
Q gi|254781094|r 377 VVFHAKIGTQGERVS 391 (702)
Q Consensus 377 v~F~~~LGs~~dK~~ 391 (702)
--+-.++|+..-++.
T Consensus 394 ~~l~~~l~N~~~r~~ 408 (722)
T 1rqg_A 394 EELVNNLGNFVHRAL 408 (722)
T ss_dssp HTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 887765547999999
No 29
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=53.68 E-value=8.9 Score=16.13 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999985565312467777738568359899999999999999999985025-389999999853278887510
Q gi|254781094|r 593 AKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHK-RYHQIGDLLHSICEPIEIFFD 666 (702)
Q Consensus 593 ~KRv~NIL~~~~k~~~~~~~~vd~~Lf~~~~Ek~L~~~~~~~~~~i~~~l~~~-dy~~~L~~L~~L~~~Id~FFD 666 (702)
+.|+..|-.-..+.+...+..+... .+++|++.|+.+.++-......+..+ + ++...++.||-+-|-|
T Consensus 81 ~~R~~rI~~lrW~~g~~Lp~~~~~~--Ls~~E~eyf~~Y~~lL~~Y~~~~g~~~~----lDLt~dl~PPk~lfIe 149 (149)
T 2e9x_A 81 YDRLLRIRALRWEYGSVLPNALRFH--MAAEEMEWFNNYKRSLATYMRSLGGDEG----LDITQDMKPPKSLYIE 149 (149)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHT--SCHHHHHHHHHHHHHHHHHHHHSSSSSC----CCTTSCCSCCC-----
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHH--CCHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCC
T ss_conf 9999999999843789897899964--6999999999999999999986288768----1455789999877679
No 30
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A*
Probab=49.66 E-value=8.4 Score=16.29 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6877696888874344689998
Q gi|254781094|r 496 PSGSKDPYALRRATLGIIRIIL 517 (702)
Q Consensus 496 PTGS~DPfaLRR~a~GiirIl~ 517 (702)
-++|+||...--+-+||+.+++
T Consensus 2 c~dssdplv~aasiigilhlil 23 (43)
T 2kih_A 2 SNDSSDPLVVAANIIGILHLIL 23 (43)
T ss_dssp ----CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8888860999999999999999
No 31
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=47.36 E-value=11 Score=15.48 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 999999749989876510567687769688887434468999837997887
Q gi|254781094|r 475 ITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPL 525 (702)
Q Consensus 475 ~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~l 525 (702)
++=.|||-+=+++=+.+=|..||-....|=|||-.-=.+|....-+++-++
T Consensus 266 a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRrllRRA~r~~~~Lg~~~~f 316 (465)
T 1yfs_A 266 ALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPF 316 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred EEEEECCCCHHHEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 145650320210244227705326687448999999999998875156317
No 32
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=38.32 E-value=15 Score=14.56 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999998502538999999985327888751027
Q gi|254781094|r 626 RLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQV 668 (702)
Q Consensus 626 ~L~~~~~~~~~~i~~~l~~~dy~~~L~~L~~L~~~Id~FFDnV 668 (702)
.+...+..+...+.+++++-++..++..+.++....|.|++..
T Consensus 429 ~~~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~i~~~N~Yi~~~ 471 (560)
T 3h99_A 429 QLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQ 471 (560)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7899999999999999986699999999999999999999835
No 33
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=34.47 E-value=17 Score=14.16 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHH--
Q ss_conf 0230313455138998989999999988652------99988999999974236788898403457899----99999--
Q gi|254781094|r 374 MLDVVFHAKIGTQGERVSRIRVLGKKIAQLI------DADVALVDRAIVLSKADLCTEIVREFPELQGK----IGKEY-- 441 (702)
Q Consensus 374 ~~~v~F~~~LGs~~dK~~Ri~~la~~la~~l------~~~~~~~~rAa~L~KaDL~t~mV~EFpeLQG~----mG~~Y-- 441 (702)
|++-++...-=|+.+-+-|+.-+|..++... +.|...+-..|.+ -||+=-.+|-.|.-... ....+
T Consensus 20 Rw~~~~~~~~EsVAeHs~~va~ia~~la~~~~~~~~~~vd~~k~~~maL~--HDl~E~~~GDi~~~~k~~~~~~~~~~~~ 97 (201)
T 2paq_A 20 RWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMY--HDASEVLTGDLPTPVKYFNSQIAQEYKA 97 (201)
T ss_dssp SCTTSCCSSCCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHH--TTTTHHHHCCCCCC---------CTHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 77899999986699999999999999998888753678899999999997--1169887078875330135666899999
Q ss_pred ----H---HHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ----8---6236998899999997344776777886358899999974998987651056768776
Q gi|254781094|r 442 ----A---VLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAINEKPSGSK 500 (702)
Q Consensus 442 ----A---~~~ge~~~Va~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~ig~~PTGS~ 500 (702)
| ..++.+++....+.+-+ .. +-.+|+.+.+|-.|||++.++-+.- ..=.|..
T Consensus 98 ~E~~a~~~l~~~lp~~~~~~~~~l~----~~-e~~~s~Ea~~vk~aDkle~~lqa~e--~~~~Gn~ 156 (201)
T 2paq_A 98 IEKIAQQKLVDMVPEELRDIFAPLI----DE-HAYSDEEKSLVKQADALCAYLKCLE--ELAAGNN 156 (201)
T ss_dssp HHHHHHHHHHTTSCGGGHHHHHHHH----TT-TSCCHHHHHHHHHHHHHHHHHHHHH--HHHTTCG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHH----HH-HCCCCHHHHHHHHHHHHHHHHHHHH--HHHCCCC
T ss_conf 9999999998749798999999999----86-1267789999999989999999999--9983880
No 34
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=29.11 E-value=21 Score=13.57 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999974998987651056768776968888743446899983799788
Q gi|254781094|r 475 ITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIP 524 (702)
Q Consensus 475 ~ilsiaDKlDtl~g~f~ig~~PTGS~DPfaLRR~a~GiirIl~e~~l~l~ 524 (702)
++-.|||-+=+++=+.+=|..||-..--|=|||..-=.+|....-+++-+
T Consensus 279 a~rvIaDH~Ra~~f~i~DGv~PSN~grGYvlRrliRRa~r~~~~Lg~~~~ 328 (441)
T 3hy0_A 279 SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKET 328 (441)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 36654310033103453787678668740144999999999998289740
No 35
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=26.66 E-value=23 Score=13.28 Aligned_cols=106 Identities=9% Similarity=0.001 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHH---------HHCCCCHHH
Q ss_conf 551389989899999999886529998899999997423-6788898403457899999998---------623699889
Q gi|254781094|r 382 KIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA-DLCTEIVREFPELQGKIGKEYA---------VLQNENISC 451 (702)
Q Consensus 382 ~LGs~~dK~~Ri~~la~~la~~l~~~~~~~~rAa~L~Ka-DL~t~mV~EFpeLQG~mG~~YA---------~~~ge~~~V 451 (702)
.-=|+.+-+-|+.-++..++...+.+. +..|+..+|-. ||+=-.+|--|-..+.-..... .....++..
T Consensus 37 r~EsvAeHS~~~a~~a~~la~~~~~~v-d~~k~~~maL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~Lp~~~ 115 (200)
T 3kh1_A 37 RRENDAEHSWHIATMAFLLAEYADEAV-QIGRVARMLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLLPPDQ 115 (200)
T ss_dssp SEEEHHHHHHHHHHHHHHTGGGSCTTC-CHHHHHHHHHHTTTTHHHHCCCCTTCCC---CHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 975699999999999999887726778-9999999999967999870677676744487788999999999998588217
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999973447767778863588999999749989876510
Q gi|254781094|r 452 CDAIEEHLKPRGPLENVPTNKISITVSLADKLDTLINFWAI 492 (702)
Q Consensus 452 a~aI~ehY~P~~~~d~lP~~~~g~ilsiaDKlDtl~g~f~i 492 (702)
... |......=+--.|+.+.++-.+||++++.=++.-
T Consensus 116 ~~e----~~~Lw~Eye~~~T~EA~~vK~~Dkle~~lq~~e~ 152 (200)
T 3kh1_A 116 AAE----YSALWQEYEARETADARFADALDRLQPLLHNFET 152 (200)
T ss_dssp HHH----HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899----9999999880899899999999830199999982
No 36
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo sapiens} SCOP: d.112.1.2
Probab=22.50 E-value=28 Score=12.76 Aligned_cols=22 Identities=32% Similarity=0.227 Sum_probs=11.8
Q ss_pred EECHHHHHHHHCCCCEEECHHH
Q ss_conf 3167999986202784716999
Q gi|254781094|r 202 VQSLDHYIRDLEEAMVLLDPEC 223 (702)
Q Consensus 202 I~~a~~Y~~~L~~~~Vi~d~~~ 223 (702)
+.+--+-...|.++-|++|-+.
T Consensus 104 ~hSL~eLR~~L~~GtVLLDl~a 125 (379)
T 1hyn_P 104 FWSLLELRRVFTKGTVLLDLQE 125 (379)
T ss_dssp HHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHCCEEEECCCC
T ss_conf 8889999999862908854897
No 37
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=22.44 E-value=28 Score=12.75 Aligned_cols=19 Identities=37% Similarity=0.761 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 7696888874344689998
Q gi|254781094|r 499 SKDPYALRRATLGIIRIIL 517 (702)
Q Consensus 499 S~DPfaLRR~a~GiirIl~ 517 (702)
|+||+-.--+-+||+.+++
T Consensus 1 ssdplv~aasiigilhlil 19 (26)
T 3bkd_A 1 SSDPLVVAASIMGILHLIL 19 (26)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEHHHHHHHHHHHH
T ss_conf 9996421899999999999
No 38
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=22.32 E-value=28 Score=12.74 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=49.3
Q ss_pred ECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 06982899999915885099999999999986289851310377656767416653032056786367778723102445
Q gi|254781094|r 102 DPKKGDVYLAVLRKPKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDLK 181 (702)
Q Consensus 102 ~~~kg~~~~~~~~~~g~~~~eiL~~ii~~~i~~l~~pKsMrWg~~~~~~~~~~FvRPirwIvaLl~~~~~~~~vi~~~~~ 181 (702)
..++|+|+++...+.+..|.+.+..+-..+ +++ ++..-|...++ +.+--.+|+.+ .+.. ..++..+...
T Consensus 43 ~~~~G~y~~f~l~K~n~dT~~ai~~La~~l--~i~-~~~i~yAG~KD-----krAvT~Q~vsv-~~~~--~~~l~~~~~~ 111 (446)
T 1z2z_A 43 EGEEGKYLIVELTKRDWDTHHLTRTLSRIL--QVS-QKRISVAGTKD-----KRALTTQKISI-FDTD--ASEIEKIHLK 111 (446)
T ss_dssp CBSCSSEEEEEEEEESCCHHHHHHHHHHHH--TCC-GGGEEESSCCC-----SSSEEEEEEEE-ETCC--HHHHTSCCCT
T ss_pred CCCCCCEEEEEEEECCCCHHHHHHHHHHHC--CCC-HHHEEECCCCC-----CCCCEEEEEEC-CCCC--HHHHHHHHCC
T ss_conf 799877799999989889999999999981--998-67622534477-----75312445531-5899--7678873048
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 8221111022344577
Q gi|254781094|r 182 EIPCGNITYGHRFHAP 197 (702)
Q Consensus 182 gi~s~n~T~GHRf~~~ 197 (702)
++.-+...+.++-+..
T Consensus 112 ~~~l~~~~~~~~~L~l 127 (446)
T 1z2z_A 112 DIELKVLGRSRKSVEL 127 (446)
T ss_dssp TEEEEEEEEESSCCCT
T ss_pred CCEEEEEEEECCCCCC
T ss_conf 9589997740688776
No 39
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.45 E-value=29 Score=12.62 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=12.4
Q ss_pred EECHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 716999999999999998885398
Q gi|254781094|r 218 LLDPECRRNAILNDAHRLASAVGL 241 (702)
Q Consensus 218 i~d~~~R~~~I~~~i~~~a~~~~~ 241 (702)
++|+++||+.|++....+..+.|+
T Consensus 4 ~~d~e~rr~~Il~aa~~l~~~~G~ 27 (209)
T 2gfn_A 4 IVDHDERRRALADAVLALIAREGI 27 (209)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988899999999999999997291
No 40
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum}
Probab=20.70 E-value=18 Score=13.98 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=57.3
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCC--------------CEEEEECCCC
Q ss_conf 02016989999999999999999999769980335886307458999849542075--------------1002302789
Q gi|254781094|r 9 YSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSP--------------EKIEERLGPR 74 (702)
Q Consensus 9 gtEElPa~~~~~~~~~l~~~~~~~l~~~~l~~~~i~~~~TPRRLav~i~~l~~~q~--------------d~~~e~kGP~ 74 (702)
-|.|-|+ -|.-+|.-++....+..+|..+.-..--.-|=|+.+-+.|.+.|. .....+|-|.
T Consensus 8 ~tDEAPa----LAT~SlLPIi~aF~~~agi~vet~DISLAgRIlA~Fpe~L~~~Qrv~D~La~LGeL~~~p~ANIIKLPN 83 (738)
T 2b0t_A 8 RTDEAPL----LATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEDQKVGNALAELGELAKTPEANIIKLPN 83 (738)
T ss_dssp ECSHHHH----HHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHHTTCGGGSCTTTCCCCHHHHHHHHTTSTTCEEEECCC
T ss_pred CCCCHHH----HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCCCEEECCC
T ss_conf 3762687----777767899999642418747620045999999846443876535860899988873798877654786
Q ss_pred CCCC---CHHHHHHHHHCCCCHHH
Q ss_conf 8589---87899899977998244
Q gi|254781094|r 75 VGAG---KKAIDGFLRSTGLQTIS 95 (702)
Q Consensus 75 ~g~p---t~A~~GF~ks~gi~~~~ 95 (702)
+++- -+|+..=++++|.+..+
T Consensus 84 ISASiPQL~aAI~ELQ~qGy~iPd 107 (738)
T 2b0t_A 84 ISASVPQLKAAIKELQDQGYDIPE 107 (738)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 656669999999999966999999
No 41
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=20.38 E-value=19 Score=13.86 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHCCCC----HHHHH-HHHHHHHHHHHHHHHHCCHHHHHHH-HHHHH----HHCCCCHHH--HHHH
Q ss_conf 98989999999988652999----88999-9999742367888984034578999-99998----623699889--9999
Q gi|254781094|r 388 ERVSRIRVLGKKIAQLIDAD----VALVD-RAIVLSKADLCTEIVREFPELQGKI-GKEYA----VLQNENISC--CDAI 455 (702)
Q Consensus 388 dK~~Ri~~la~~la~~l~~~----~~~~~-rAa~L~KaDL~t~mV~EFpeLQG~m-G~~YA----~~~ge~~~V--a~aI 455 (702)
+=++.++..+..+.+..+.. .-=++ -+..+||.|. ..||+..|+- ..||- .--+++..+ +.-+
T Consensus 418 ~il~~m~~~~~~~~eetG~~~nleaTPAEsts~Rfak~D~-----k~fg~i~~~~d~~YYTNS~hlpv~~~~~~~eki~~ 492 (605)
T 1h7b_A 418 EILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLDT-----EKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISR 492 (605)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECCCCTTHHHHHHHHHH-----HHHCCCTTTTSSSSCCCTTCCCTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-----HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999999999799759997646757899999989-----97598888687886568762688999998999974
Q ss_pred HHHHCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9973447767778-------86358899999974998987651056
Q gi|254781094|r 456 EEHLKPRGPLENV-------PTNKISITVSLADKLDTLINFWAINE 494 (702)
Q Consensus 456 ~ehY~P~~~~d~l-------P~~~~g~ilsiaDKlDtl~g~f~ig~ 494 (702)
.++|.|...|..+ +.....++-++.+++-+-+++|++..
T Consensus 493 e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~~v~~~~~~i~Yf~~n~ 538 (605)
T 1h7b_A 493 EAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQHLDYFGVNM 538 (605)
T ss_dssp HGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred HCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 1543463587589998778876799999999999986798153286
Done!