RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (702 letters) >gnl|CDD|179258 PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated. Length = 682 Score = 742 bits (1918), Expect = 0.0 Identities = 270/719 (37%), Positives = 405/719 (56%), Gaps = 55/719 (7%) Query: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60 M D LLEI +EE+PA+ KAAE L+ + LKE G+ + +++ + TP RL + ++GL+ Sbjct: 1 MKDLLLEIGTEELPAKALRKAAEQLAERITKELKEAGLSFGSIKVFATPRRLAVLVEGLA 60 Query: 61 PHSPEKIEERLGPRV-------GAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVL 113 P++ EE+ GP V G KA +GF R G+ T+ D + ++ KKG+ A Sbjct: 61 EKQPDREEEKKGPAVKIAFDADGNPTKAAEGFARGQGV-TVDDLERRET-KKGEYLFARK 118 Query: 114 RKPKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKE 173 R ++L I+P A+ K+P+PKSMRW ++RP+ I+ +L + Sbjct: 119 VVKGRPTAELLPEILPEALAKLPFPKSMRWGN-----GDLRFVRPVHWIVALL-----GD 168 Query: 174 KIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAH 233 +++ ++ I G +T GHRF P PI + + D Y L EA V+ DPE R+ IL Sbjct: 169 EVVPFEILGIKSGRVTRGHRFLGPGPITIANADDYEEKLREAKVIADPEERKAIILEQIE 228 Query: 234 RLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTR 293 LA+ +G ++ D+DLLEE+ GLVEW V +GSFD+K+L LPEE++ T+K +QK F Sbjct: 229 ELAAELGGQVDIDEDLLEEVTGLVEWPVVLLGSFDEKFLELPEEVLITTMKEHQKYFPVY 288 Query: 294 TREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKES 353 +G L FI VSNI S I++GN +V+ ARL DA F++ D Sbjct: 289 DADGKLLPNFITVSNI-ESKDPENIIKGNEKVLRARLADAEFFFEEDLK----------- 336 Query: 354 ALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDR 413 KPL+ R+ +L +VVFH K+GT ++V RIR L IA+ + AD AL +R Sbjct: 337 ---------KPLEDRVEKLK--NVVFHEKLGTLYDKVERIRALAGYIAEQLGADAALAER 385 Query: 414 AIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKI 473 A +L+KADL TE+V EFPELQG +G+ YA+ E+ AIEEH PR + +P+ + Sbjct: 386 AALLAKADLVTEMVGEFPELQGIMGRYYALHDGEDEEVALAIEEHYLPRFAGDELPSTPV 445 Query: 474 SITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED-- 531 V+LADKLDTL+ + I E P+GSKDP+ALRRA LGI+RIILE +D+ L + IE Sbjct: 446 GAAVALADKLDTLVGIFGIGEIPTGSKDPFALRRAALGILRIILEKGLDLDLDELIEKAV 505 Query: 532 --------QNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSS 583 +++ FF DRLK L D IR+D+I+A+L D+L + ++ L+ F Sbjct: 506 SLYNANVLDDVLDFFLDRLKALLQDEGIRYDVIDAVLALRPDDLADLDARVEALSAFRKL 565 Query: 584 AKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMD 643 + + + KR+ IL E K +S E+ P AEK LYA + + ++ ++ Sbjct: 566 PEFKALAAANKRVSNILKKAEGK---VSGEVDPALFEEPAEKALYAALEELKPKVEPALA 622 Query: 644 HKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV 702 Y + L ++ P++ FFD V+V +D +R NRL+LL ++ + L V + K+ Sbjct: 623 AGDYQAALEALAALRPPVDAFFDNVMVMAEDEALRANRLALLASLRELFLRVADFSKLA 681 >gnl|CDD|161766 TIGR00211, glyS, glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model. Length = 691 Score = 419 bits (1078), Expect = e-117 Identities = 231/725 (31%), Positives = 372/725 (51%), Gaps = 63/725 (8%) Query: 3 DFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSPH 62 FL+EI +EE+PA+ A + L L + G+ + N+ + TP RL + +K L+ Sbjct: 5 TFLVEIGTEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAEL 64 Query: 63 SPEKIEERLGPRVGA-----GK--KAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRK 115 P++ EE+ GP V GK KA GF + G+ + D +I + K +++ + + Sbjct: 65 QPDRKEEKKGPAVKIAFDADGKPTKAALGFAKGQGI-NVEDAEIFQTDKGEWLFVRKIHE 123 Query: 116 PKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKI 175 + +D+L +V + K+P+PKSMRW +IRP+ I+ +L + + Sbjct: 124 -GQPTKDLLPPLVLEFLAKLPFPKSMRWGN-----VDVRFIRPIHWIVVLL-----GDDV 172 Query: 176 IDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRL 235 I +++ + T GHRF + ++S D Y L+E V+ DP+ R+ IL L Sbjct: 173 IPIEILNVKSDRTTRGHRFLGEDEVSIESPDAYPEQLKENHVIADPKERKAMILQQIETL 232 Query: 236 ASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTR 295 A+ +G D+DLL+E++ LVE+ +G F++++L LP E++ T+K +Q+ F + Sbjct: 233 AAKLGGIADIDEDLLDEVVSLVEYPTALLGKFEEEFLSLPAEVLVTTMKEHQRYFPVYDK 292 Query: 296 EGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESAL 355 +G L FI VSN + D I+ GN +V+ ARL DA F Sbjct: 293 DGKLLPHFITVSNGNSKDP-QKIILGNEKVLRARLSDAEFF------------------- 332 Query: 356 KFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVA---LVD 412 + DL KPLD + RL+ VVF ++GT ++V RI ++ IAQ + AD V Sbjct: 333 -YKTDLKKPLDDNLPRLE--TVVFQQELGTLKDKVDRISIIAGYIAQQLGADENMLEHVK 389 Query: 413 RAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNK 472 RA +LSKADL T +V EFPELQG +G++YA E+ + A+ E PR +++P++ Sbjct: 390 RAALLSKADLVTNMVYEFPELQGIMGEKYARHDGEDEAVAVAVNEQYLPRSAGDDLPSSL 449 Query: 473 ISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIED- 531 + V++ADKLDTL + + I + P+GSKDP+ALRRA LG++RII+E ++I L + + + Sbjct: 450 VGSVVAMADKLDTLASIFGIGQIPTGSKDPFALRRAALGVLRIIVEKNLEIDLEELLTNF 509 Query: 532 --------------QNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHL 577 ++L FF R + L D I D+I+A+L + + L Sbjct: 510 VLLQGDKLTNSNVLEDLEDFFLQRFRALLQDEGIDVDVIQAVLARRETDPADFDARAQAL 569 Query: 578 NEFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTH 637 + F K E + KR+ IL K N +S EI EK L+ + + Sbjct: 570 SHFRDLPKAEALAAANKRVANILK---KGNPVLSSEIQANLFKEPKEKALFEAVLAIKMN 626 Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697 QES + Y + L + P++ FFD V+V DD E+R NRL+ L ++ + L V + Sbjct: 627 AQESFESGDYETALEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVAD 686 Query: 698 VQKIV 702 + + Sbjct: 687 ISALQ 691 >gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional. Length = 1000 Score = 379 bits (975), Expect = e-105 Identities = 209/723 (28%), Positives = 336/723 (46%), Gaps = 79/723 (10%) Query: 2 PDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLSP 61 L EI SEE+PA + L L LL + + Y+ + TP RL L ++ ++P Sbjct: 312 ETLLFEIGSEELPATFVPIGIQQLESALRELLADTRLGYEKLEVLGTPRRLALLVEDVAP 371 Query: 62 HSPEKIEERLGPRV-------GAGKKAIDGFLRSTG-----LQTIS-DCQIKKDPKKGDV 108 P+ E+ GPR+ G A +GF RS G L + D I+ G Sbjct: 372 REPDAEREKRGPRLSAAFDADGTPTPAGEGFFRSQGVDISHLSALDQDGAIEIREINGVE 431 Query: 109 YLAVLRK-PKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILV 167 YL ++R P R +L +P IQ + +PK MRW S+ RP++ ++ + Sbjct: 432 YLFLVRPEPGRDAAAILANELPELIQSLRFPKKMRWDD-----PGLSYARPIRWLVALY- 485 Query: 168 AEDAKEKIIDLDLKEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNA 227 ++I+ + + + G T GHR P P+++ S D Y+ L +A V+L P+ RR Sbjct: 486 ----GDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQACVILSPKERREI 541 Query: 228 ILNDAHRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQ 287 I+ LA+ V ++ + + L++E+ LVE V +G FD+K+L LP+EL+ + +Q Sbjct: 542 IVQGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQ 601 Query: 288 KCFVTRTREGVLANCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNL 347 + F R +G L N F++V++ D IV+GN +V+ ARL D +K D Sbjct: 602 RYFPVRDAQGTLLNHFVIVADGSPDD---EIVRGNEKVLRARLTDGAFLFKAD------- 651 Query: 348 SSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLID-A 406 L PL+ + +L V + +G+ ++V RI+ +++A L+ + Sbjct: 652 -------------LKTPLETFVEKLK--SVTYFEALGSLADKVERIKAHAEELAALLPLS 696 Query: 407 DVALVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLE 466 +DRA L K DL +++V EFPELQG +G+ YA E + A+ EH PR + Sbjct: 697 ARETLDRAAELCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGD 756 Query: 467 NVPTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPL- 525 ++P + +SLAD+LD L+ +A+ KP+ S DPYALRR LG++ ++ + L Sbjct: 757 SLPASTTGALLSLADRLDNLLGCFALGLKPTSSSDPYALRRQALGVLTLLRATPASLDLE 816 Query: 526 -----------SQFIEDQNLIL-----FFHDRLKLYLHDRDIRHDLIEAILRPENDNLLT 569 S + + +L F RLK L D D I A+L N Sbjct: 817 DLLARLARHFPSTTVWVKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAAVLPDACKNPAE 876 Query: 570 IVDLIKHLNEFFSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYA 629 + L E S+ + + R+ +ILA + SL + P AE L Sbjct: 877 ADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTDASLLLEP------AELNLKQ 930 Query: 630 VISDFGTHIQESMDHKR--YHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQY 687 + F + E + +L + + FFD+VLV DD +R+ RL LL Sbjct: 931 ALDAFREELTELPIDLKDYVAAAAELP----QAVNTFFDEVLVMADDEAIRNARLGLLAA 986 Query: 688 IKN 690 I++ Sbjct: 987 IRD 989 >gnl|CDD|129069 smart00836, DALR_1, DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. Length = 122 Score = 37.2 bits (87), Expect = 0.015 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 11/105 (10%) Query: 595 RIFQILAIEEKKNREISLEISPQ----YLLL--EAEKRLYAVISDFGTHIQESMDHKRYH 648 RI IL +K E L + LL E L +++ F ++ + + H Sbjct: 7 RICSIL----RKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPH 62 Query: 649 QIGDLLHSICEPIEIFFDQVLV-NVDDREVRDNRLSLLQYIKNII 692 ++ + L+ + F+++ V ++ E+R RL+LL+ ++ ++ Sbjct: 63 RLANYLYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVL 107 >gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed. Length = 507 Score = 35.9 bits (84), Expect = 0.039 Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 595 RIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLL 654 RI IL +K E +++ L E EK L +++F ++ + + H+I + L Sbjct: 399 RICSIL----RKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYL 454 Query: 655 HSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692 + + F+++VL+ ++ E+R+ RL+L++ ++ Sbjct: 455 YELAGAFHSFYNRVLLKDEEEELRNARLALVKATAQVL 492 >gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional. Length = 564 Score = 31.4 bits (72), Expect = 0.81 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 8/41 (19%) Query: 72 GPR-----VGAGKKA---IDGFLRSTGLQTISDCQIKKDPK 104 GPR +G GKKA ID FL + +I K K Sbjct: 421 GPRTVTTAIGHGKKAARNIDAFLGGEPYEHRPKREIVKFDK 461 >gnl|CDD|114800 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis. Length = 500 Score = 30.1 bits (68), Expect = 1.8 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 344 LPNLSSLKESALKFNLDLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQL 403 LP+ S+LK + L P+ + L V F GT+ E + KK A+ Sbjct: 192 LPDFSALKFTKYNQYESLVLPM---IKYLKSHGVDFE--YGTKVENIEVDISDSKKAAKK 246 Query: 404 IDADVALVDRAIVLSKADL 422 I + +I L++ DL Sbjct: 247 IAMTRNGKEESIELTEDDL 265 >gnl|CDD|162955 TIGR02630, xylose_isom_A, xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose. Length = 434 Score = 29.6 bits (67), Expect = 2.6 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Query: 547 HDRDIRHDLIEAILRPENDNLLTIVDLIK 575 HDRDI + A LR N NL IVDLIK Sbjct: 98 HDRDIAPE--GASLRETNANLDEIVDLIK 124 >gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein. Length = 453 Score = 29.3 bits (65), Expect = 3.7 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Query: 94 ISDCQIKKDPKKGDVYLAVLRKPKRLIEDVLKTIVPVAIQKVPW 137 +SDCQI P+ GD L RL+ D LK V VA ++ W Sbjct: 353 LSDCQIVLVPQLGDQVLNT-----RLLSDELKVSVEVAREETGW 391 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 29.0 bits (65), Expect = 3.9 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 567 LLTIVDL-IKHLNEFFSSAKGEKFLLSAKRIFQILAIEEKKNREIS 611 + D +K NEFFS + KF+ A + IE+K+ RE+ Sbjct: 417 IAKAADARVKATNEFFSGIRIAKFM--AWEPCFVANIEDKRARELR 460 >gnl|CDD|180531 PRK06330, PRK06330, transcript cleavage factor/unknown domain fusion protein; Validated. Length = 718 Score = 28.9 bits (65), Expect = 4.1 Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 35/136 (25%) Query: 482 KLDTLINFWAINEKPSGSKDPYALRRATLGIIRII---LENKIDIP-----LSQFIEDQN 533 K DT I E P KDPY LR L + L D+ + F+ D Sbjct: 258 KKDTRI------ETPDSLKDPYVLRPKGLSHESQLERSLSGSTDVDKKIQTIYTFVRD-- 309 Query: 534 LILFFHDRLKLYLHDRDIRHDLIEAI----LRPENDNLLTIVDLIKHLNEFF---SSAKG 586 H LK + + R LI+ + L N LL L+ L+EF SS Sbjct: 310 ----LHSELK----NEENRKSLIKKLQDLDLEELNSALLLQRALL--LSEFLGEKSSELD 359 Query: 587 EKFL--LSAKRIFQIL 600 + + LS +I I+ Sbjct: 360 CENIASLSEDQIEDIV 375 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 28.8 bits (65), Expect = 4.4 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 212 LEEAMVLLDPECRRNAILNDAHRLASAVGLELVEDKDLLEEI 253 L+E V LDP R AI+ L GL ++ L++EI Sbjct: 156 LDEPTVGLDPASRA-AIVAHVRALCRDQGLSVLWATHLVDEI 196 >gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. Length = 455 Score = 28.6 bits (64), Expect = 5.7 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 36/164 (21%) Query: 514 RIILENKIDIPLSQFIEDQNLILFFHDRL------KLYLHDRDIRHDLIEAILRPENDNL 567 + N PLS ++ I F H + + ++A+ + E + Sbjct: 39 AVARHNYPKTPLSLYVH----IPFCHKACYFCGCNVIITRQKHKADPYLDALEK-EIALV 93 Query: 568 LTIVDLIKHLNEFFSSAKGEKFL--LSAKRIFQIL--AIEEKKNREISLEISPQYLLLEA 623 + D +H+++ +L R+ +++ + EIS+EI P+Y+ + Sbjct: 94 APLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDV 153 Query: 624 EKRLYAV--------ISDFGTHIQ-------------ESMDHKR 646 L + DF +Q E M+H R Sbjct: 154 IDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAR 197 >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional. Length = 433 Score = 28.5 bits (64), Expect = 6.2 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Query: 170 DAKEKIIDLDLKE----IPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMV 217 DA EKI+D L++ CGN R P + + +D + L+EA+ Sbjct: 377 DAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALT 428 >gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. Length = 217 Score = 28.0 bits (63), Expect = 7.8 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 221 PECRRNAILNDAHRLASAVGLELVEDKDLLEEI---IGLVE 258 P+ R +L A A G E+ +D +E++ + LVE Sbjct: 156 PQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVE 196 >gnl|CDD|181976 PRK09592, celD, cellobiose phosphotransferase system IIC component; Reviewed. Length = 449 Score = 28.1 bits (63), Expect = 8.2 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 11/46 (23%) Query: 127 IVPVAIQKVPWPKSMRWSTTHSPISAF----SWIRPLKSILCILVA 168 V I +VPWP T + AF W + +++C +VA Sbjct: 387 FVKPIIAQVPWP-------TPVGLGAFIGTADWRAAVLALVCAIVA 425 >gnl|CDD|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional. Length = 191 Score = 27.9 bits (62), Expect = 10.0 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNR-LSLLQYIK 689 I E D +R + G + E +E+ F Q L + E+RD + + LL Y++ Sbjct: 133 IAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ 185 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.140 0.406 Gapped Lambda K H 0.267 0.0738 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 11,756,365 Number of extensions: 809406 Number of successful extensions: 1607 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1579 Number of HSP's successfully gapped: 34 Length of query: 702 Length of database: 5,994,473 Length adjustment: 100 Effective length of query: 602 Effective length of database: 3,833,673 Effective search space: 2307871146 Effective search space used: 2307871146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (27.3 bits)