RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (702 letters) >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A (A:92-112,A:499-629) Length = 152 Score = 65.8 bits (160), Expect = 2e-11 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%) Query: 581 FSSAKGE--KFLLSA-KRIFQIL--AIEEKKNR--EISLEISPQYLLLEAEKRLYAVISD 633 F S +GE ++ A R IL A EE E + + L E E+ L ++S Sbjct: 19 FGSFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSK 78 Query: 634 FGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIIL 693 F ++++ + H I + + F+ V + VR+ RL L+ ++ ++ Sbjct: 79 FPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLK 138 Query: 694 IVINVQKI 701 + + I Sbjct: 139 NALYLMGI 146 >3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens} (A:1-25,A:111-305) Length = 220 Score = 63.0 bits (152), Expect = 1e-10 Identities = 30/200 (15%), Positives = 49/200 (24%), Gaps = 32/200 (16%) Query: 375 LDVVFHAKIGTQGERVSRIRVLGKKIAQ---LIDADVA---------------------- 409 +D T + + K IA+ ++ Sbjct: 23 VDEKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEF 82 Query: 410 -LVDRAIVLSKADLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENV 468 V + K R F ++G A + N CD I H Sbjct: 83 SQVVTLVDEEKITFGQAEERLFGTSHCEVGFALAKRWSLNEFICDTILYHHDIEAV--PY 140 Query: 469 PTNKISITVSLADKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIP--LS 526 I V+ AD+ TL KP S + G+IR L + Sbjct: 141 KQAAIVAXVAFADEYCTLRRLGFEGHKPVDSVRTLLENHPSWGVIRRSLGGSDFDEKLIV 200 Query: 527 QFIED--QNLILFFHDRLKL 544 ++ + + L Sbjct: 201 AELDSSIVEIRAAVDELFLL 220 >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} (A:116-136,A:513-607) Length = 116 Score = 60.6 bits (147), Expect = 5e-10 Identities = 11/80 (13%), Positives = 28/80 (35%) Query: 613 EISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNV 672 L A K L ++ + ++ ++ + L + + +D + V Sbjct: 22 NADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAG 81 Query: 673 DDREVRDNRLSLLQYIKNII 692 E+ RL+L + ++ Sbjct: 82 QTEELATARLALYGAARQVL 101 >3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} (A:1-131) Length = 131 Score = 49.0 bits (116), Expect = 2e-06 Identities = 21/134 (15%), Positives = 37/134 (27%), Gaps = 14/134 (10%) Query: 360 DLSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIV--- 416 DL Q L H R+ +K+A D D+ ++ A Sbjct: 2 DLQHWQAQFENWLKN--HHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHD 59 Query: 417 LSKADLCTEIVREFPELQGKIGKEYA------VLQNENISCCDAIEEHLKPRGPLENVPT 470 + + L + + + + C AI H + P Sbjct: 60 IVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCHAIAAH---SFSAQIAPL 116 Query: 471 NKISITVSLADKLD 484 + V AD+L+ Sbjct: 117 TTEAKIVQDADRLE 130 >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} (A:1-24,A:332-464) Length = 157 Score = 37.9 bits (88), Expect = 0.004 Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 4/98 (4%) Query: 595 RIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLL 654 RI Q+ + + + + L + L + + ++ + + +I D L Sbjct: 39 RIHQVF--AKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYL 96 Query: 655 HSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNII 692 ++ F+++ V ++ L L + I Sbjct: 97 KNLAANFHKFYNENKVV--GSANENDLLKLFSLVALSI 132 >1ekg_A Frataxin; freidreich'S ataxia, iron transport, mitochondrial, disease, metal transport; 1.80A {Homo sapiens} (A:) Length = 127 Score = 35.5 bits (82), Expect = 0.024 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 635 GTHIQESMDHKRYHQIGD-LLHSICEPIEIFFDQVLVNVD-DREVRDNRLSLLQYIKNII 692 G+H+ S+D Y ++ + L S+ E E D+ D D L+ ++ ++ Sbjct: 1 GSHM-GSLDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLT-VKLGGDLG 58 Query: 693 LIVINVQ 699 VIN Q Sbjct: 59 TYVINKQ 65 >1woj_A CNP, cnpase, 2',3'-cyclic-nucleotide 3'-phosphodiesterase; hydrolase; 1.80A {Homo sapiens} PDB: 2ilx_A (A:) Length = 214 Score = 31.7 bits (72), Expect = 0.30 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 323 SRVVAARL---EDALHFWKRDQNNLPNLSSL-KESALKFNLDLSKPLDQRMARLDMLDVV 378 + AR+ E L W D + L +L + S L + ++ LD+L+++ Sbjct: 108 PKTTGARVELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEIL 167 Query: 379 FHAKIGTQGERVSRI 393 K G++GE V + Sbjct: 168 RQEKGGSRGEEVGEL 182 >3eck_A Protein (homoprotocatechuate 2,3-dioxygenase); oxidoreductase, extradiol, FEII, crystal packing; HET: XXG; 1.60A {Brevibacterium fuscum} (A:141-312) Length = 172 Score = 29.1 bits (64), Expect = 1.7 Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 3/26 (11%) Query: 193 RFHAPHPIKVQSLDH---YIRDLEEA 215 R+ ++ LDH D+ Sbjct: 1 RYDLYSAGELVRLDHFNQVTPDVPRG 26 >1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} (A:141-323) Length = 183 Score = 28.3 bits (62), Expect = 3.1 Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 3/26 (11%) Query: 193 RFHAPHPIKVQSLDH---YIRDLEEA 215 R+ ++ LDH D+ Sbjct: 1 RYDLYSAGELVRLDHFNQVTPDVPRG 26 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 28.2 bits (62), Expect = 3.3 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 12/79 (15%) Query: 607 NREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDH-KRYHQIGDLLHS--ICEPIEI 663 R++ ++L EA+ L G R QI +L S E +E Sbjct: 252 RRQLDARDIKVFVLDEADNMLD--QQGLGDQSMRIKHLLPRNTQI--VLFSATFSERVEK 307 Query: 664 FFDQVL-----VNVDDREV 677 + ++ + + E+ Sbjct: 308 YAERFAPNANEIRLKTEEL 326 >1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} (A:1-107) Length = 107 Score = 27.8 bits (61), Expect = 4.2 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 6/68 (8%) Query: 513 IRIILENKIDIPLSQFIEDQNLILFFHDRLKLYLHDRDIRHDLIEAILRPENDNLLTIVD 572 R+ + + IE + K + ++I AI+ P+ + + D Sbjct: 44 FRLTQKTDGTVMRDFLIEKAA------EYFKQPEQPKQNAIEVISAIMAPQEEQTKSKAD 97 Query: 573 LIKHLNEF 580 L K L F Sbjct: 98 LYKFLAMF 105 >2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138} (A:) Length = 299 Score = 26.8 bits (59), Expect = 8.7 Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 7/69 (10%) Query: 115 KPKRLIEDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEK 174 + + I K + + + + + L L + +K Sbjct: 58 RELEQHLNAGSRIHTNKEHKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKL-------DK 110 Query: 175 IIDLDLKEI 183 I DL +E+ Sbjct: 111 IKDLSKQEV 119 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.140 0.406 Gapped Lambda K H 0.267 0.0470 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 5,384,134 Number of extensions: 257624 Number of successful extensions: 674 Number of sequences better than 10.0: 1 Number of HSP's gapped: 673 Number of HSP's successfully gapped: 21 Length of query: 702 Length of database: 4,956,049 Length adjustment: 95 Effective length of query: 607 Effective length of database: 1,744,574 Effective search space: 1058956418 Effective search space used: 1058956418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.8 bits)