BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(702 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 702
Score = 1425 bits (3688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/702 (100%), Positives = 702/702 (100%)
Query: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60
MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS
Sbjct: 1 MPDFLLEIYSEEIPARMQHKAAEDLSIILIGLLKEEGVIYQNMRQYWTPHRLFLYLKGLS 60
Query: 61 PHSPEKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLI 120
PHSPEKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLI
Sbjct: 61 PHSPEKIEERLGPRVGAGKKAIDGFLRSTGLQTISDCQIKKDPKKGDVYLAVLRKPKRLI 120
Query: 121 EDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDL 180
EDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDL
Sbjct: 121 EDVLKTIVPVAIQKVPWPKSMRWSTTHSPISAFSWIRPLKSILCILVAEDAKEKIIDLDL 180
Query: 181 KEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG 240
KEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG
Sbjct: 181 KEIPCGNITYGHRFHAPHPIKVQSLDHYIRDLEEAMVLLDPECRRNAILNDAHRLASAVG 240
Query: 241 LELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLA 300
LELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLA
Sbjct: 241 LELVEDKDLLEEIIGLVEWVQVFMGSFDKKYLCLPEELIRLTIKTNQKCFVTRTREGVLA 300
Query: 301 NCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLD 360
NCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLD
Sbjct: 301 NCFILVSNIQASDGGAAIVQGNSRVVAARLEDALHFWKRDQNNLPNLSSLKESALKFNLD 360
Query: 361 LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA 420
LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA
Sbjct: 361 LSKPLDQRMARLDMLDVVFHAKIGTQGERVSRIRVLGKKIAQLIDADVALVDRAIVLSKA 420
Query: 421 DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLA 480
DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLA
Sbjct: 421 DLCTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLA 480
Query: 481 DKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHD 540
DKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHD
Sbjct: 481 DKLDTLINFWAINEKPSGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILFFHD 540
Query: 541 RLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL 600
RLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL
Sbjct: 541 RLKLYLHDRDIRHDLIEAILRPENDNLLTIVDLIKHLNEFFSSAKGEKFLLSAKRIFQIL 600
Query: 601 AIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEP 660
AIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEP
Sbjct: 601 AIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQESMDHKRYHQIGDLLHSICEP 660
Query: 661 IEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV 702
IEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV
Sbjct: 661 IEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVINVQKIV 702
>gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 173
Score = 32.3 bits (72), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 547 HDRDIRHDLIEAI-LRPENDNLLTIVDLIKHLNEFFSSAKGE--KFLLSAKRIFQILAIE 603
H IR D+ EA LR +++N+L E S + E + +L+AK +ILA E
Sbjct: 36 HADKIRDDIFEARRLREKSENILM------QYKEKHSKVEEETREIILAAKHRAKILAEE 89
Query: 604 EKKN-REIS------LEISPQYLLLEAEKRLYAVISDFGTHI 638
+N +IS LE Y+ LEA++ LYA I+DF I
Sbjct: 90 GCQNIEQISALYLKDLEQKIHYMKLEAKRLLYAKIADFSVEI 131
>gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 261
Score = 32.3 bits (72), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 438 GKEYAVLQNENISCCDAIEEHLKPRGPLENVPT------NKISITVSLADKLDTLIN 488
G E++ LQ ++ D IE + P G N P NK++IT LA K+D IN
Sbjct: 142 GNEHS-LQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQIN 197
>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 273
Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 423 CTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADK 482
C E + ++ +I E++ L+ E ISC PLE +P+ S+ + L+
Sbjct: 64 CMETKKIHRMIRAEISTEFSTLKREVISC------------PLEEIPSISQSVDLILSPL 111
Query: 483 -----LDTLINFWAINE--KPSG 498
DTL F IN KP G
Sbjct: 112 NLHIINDTLEMFSKINHMLKPGG 134
>gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62]
Length = 232
Score = 25.8 bits (55), Expect = 2.6, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 491 AINEKP--SGSKDPYALRRATLGIIRIILENKIDIPLSQFIEDQNLILF----FHDRLKL 544
A+NE P G D AL A+ ++ + + D P++ +E ++ F FH++
Sbjct: 31 ALNELPIPDGVVDFRALLAASPSTMKDVSIGQKDAPVT-MVEYASMTCFHCAEFHNKTFK 89
Query: 545 YLHDRDIRHDLIEAILR 561
YL D+ I+ + ILR
Sbjct: 90 YLEDKYIKTGKLRYILR 106
>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 343
Score = 25.4 bits (54), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 32 LLKEEGVIYQNMRQYWTPHRLFLYLKGLSPHSPEK----IEER 70
+++ +Y M++Y+ + + + GL+PH+ E IEE+
Sbjct: 188 IIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEK 230
>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 554
Score = 24.3 bits (51), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 581 FSSAKGEKFLLSAKRIFQILAIEEKKNREISLEISPQYLLLEAEKRLYAVISDFGTHIQE 640
+ +G+ ++ + + + + E ++ ++ +Y L++ + FG I+E
Sbjct: 167 YDGTQGKHYIAPMLLLSKYMLVGEGACGSLTRQLIERYSLMDGRQP-----QKFGLGIKE 221
Query: 641 SMDHK-RYHQIGDLLHSICEPIEI 663
K +YH+ G LHSI P+++
Sbjct: 222 LWKIKPQYHRRGLALHSIGWPLDM 245
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 23.9 bits (50), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 590 LLSAKRIFQIL----AIEEKKNRE--------ISLEISPQYLLLEAEKRLYAVISDFGTH 637
LL+ KRI L I+ +K RE L+ + + R +IS F
Sbjct: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
Query: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697
I + HK+ ++ D H I + +++ Q++ + E +D ++L Y K I + N
Sbjct: 580 IHGELSHKKIGKVQDNFH-IDDTCDLYKHQMIEKKE--EEKDPNIALALYFKRTIPNIRN 636
Query: 698 VQKIV 702
+I+
Sbjct: 637 HYEIL 641
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.140 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,741
Number of Sequences: 1233
Number of extensions: 19654
Number of successful extensions: 63
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 13
length of query: 702
length of database: 328,796
effective HSP length: 80
effective length of query: 622
effective length of database: 230,156
effective search space: 143157032
effective search space used: 143157032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 42 (20.8 bits)