HHsearch results for GI: 254781095 and protein with PDBid: 3hrd_C
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.72 E-value=2.2e-05 Score=52.98 Aligned_cols=153 Identities=18% Similarity=0.291 Sum_probs=95.0
Q ss_pred EEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEEE--CC-CEECCHHHHCC-CCCCCEEEECCCCCCCCCEEEHHHHHHH
Q ss_conf 99968989999999985629989998475203660--48-84022022112-3443113302665123311221567777
Q gi|254781095|r 42 MFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR--DA-GIRGVVLRLSN-AGFSNIEVRNHCEMIVGARCSGKSLANS 117 (318)
Q Consensus 42 ~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~~--D~-~~~G~vI~l~~-~~~~~i~~~~~~~i~v~AG~~~~~l~~~ 117 (318)
|+.|+|.+|+.+++.-.+ +.+..++++|+.++.. .+ .-+..+|.+.. ..++.|+..++ .++.||++.+.++.+.
T Consensus 6 y~~P~sl~ea~~ll~~~~-~~~~~~laGGTdL~~~~~~~~~~p~~lIdl~~I~eL~~I~~~~~-~l~IGA~vt~~~i~~~ 83 (296)
T 3hrd_C 6 FFAPKTLEEAKGLLHQYK-DVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEEN-TIHIGALSTFTQIENH 83 (296)
T ss_dssp EECCSSHHHHHHHHHHTT-TSCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSS-EEEEETTCBHHHHHHC
T ss_pred EECCCCHHHHHHHHHHCC-CCCCEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCC-EEEEEECCHHHHHHHH
T ss_conf 668999999999998589-98976998975599998418789996998887845553685164-3897231001143322
Q ss_pred H-HHHHCCCH----HCCCCHH----HHHHHHHCCCCCCCCCEEEEEE----EEEEEECCCCCEEEECCCCCCCC---CCC
Q ss_conf 8-87520120----0038725----6632431157321583134566----64344112321000012334431---002
Q gi|254781095|r 118 A-LRHGIGGF----HFFYGIP----GSIGGAAYMNAGANNCETSQYV----VEVHGIDRKGNQHVIPREQLKYQ---YRS 181 (318)
Q Consensus 118 ~-~~~gl~Gl----E~l~gIP----GTVGGAi~mNAGayG~ei~d~i----~~V~~~d~~g~~~~l~~~e~~f~---YR~ 181 (318)
. ....+..| ...++.+ |||||.+++.. .++. +.-.+ ..|++...+| .++++-+|+--+ ||.
T Consensus 84 ~~~~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~-p~~D-~~~~Llal~A~v~l~s~~G-~R~i~~~df~~g~~~~~~ 160 (296)
T 3hrd_C 84 PFIRSHVRALYKAASQVGSPQIRNLGTIGGNLSTSS-VAGD-GVSAMTTLDATVVLESVRG-TRQMKLTDFFDGEGFKRR 160 (296)
T ss_dssp HHHHHHCHHHHHHHHTSSCHHHHHHCBHHHHHHHTC-TTCH-HHHHHHHTTCEEEEEETTE-EEEEEHHHHHHCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCC-CCHHHHHHHHHEEEEECCC-CEEEEEHHHCCCCCCCCC
T ss_conf 455545589999997408822698888347554468-6433-4569998533158983699-489850340146763334
Q ss_pred CCCCCCCCEEEEECCCCC
Q ss_conf 322467620010023545
Q gi|254781095|r 182 SEITKDLIITHVVLRGFP 199 (318)
Q Consensus 182 S~~~~~~iIl~a~l~l~~ 199 (318)
+.++.+.+++++.+...+
T Consensus 161 t~l~~~Eii~~I~iP~~~ 178 (296)
T 3hrd_C 161 NALEADEIMTEVIIDRPD 178 (296)
T ss_dssp SSCCTTCEEEEEEEECCC
T ss_pred CCCCCCCEEEEEEECCCC
T ss_conf 545788578999964654