HHSEARCH alignment of GI: 254781095 and SCOP domain: d1t3qc2

Alignment
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]}
Probab=97.77  E-value=7.5e-06  Score=54.36  Aligned_cols=149  Identities=13%  Similarity=0.117  Sum_probs=95.8

Q ss_pred             EEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEE--EC-CCEECCHHHHCCC-CCCCEEEECCCCCCCCCEEEHHHHHHH
Q ss_conf             9996898999999998562998999847520366--04-8840220221123-443113302665123311221567777
Q gi|254781095|r   42 MFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILV--RD-AGIRGVVLRLSNA-GFSNIEVRNHCEMIVGARCSGKSLANS  117 (318)
Q Consensus        42 ~~~p~s~~el~~~l~~~~~~~p~~iiG~GSNil~--~D-~~~~G~vI~l~~~-~~~~i~~~~~~~i~v~AG~~~~~l~~~  117 (318)
                      |+.|+|.+|+.++++..+   ...++++|+.++.  .. ...+..+|.+..- .++.++..++ .++.||++.+.++...
T Consensus         8 y~~P~sl~ea~~ll~~~~---~a~~vaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~i~~~~~-~l~IGa~vt~~~l~~~   83 (176)
T d1t3qc2           8 YRAPASLQEVIQVLADDP---DARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAG-ILSVGAMVTHFRNKTD   83 (176)
T ss_dssp             EECCSSHHHHHHHHHHCT---TCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETT-EEEEETTCBHHHHHHC
T ss_pred             EECCCCHHHHHHHHHHCC---CCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCC-CEEECCCHHHHHHHHH
T ss_conf             648899999999997689---987995478346656442038663337555302531660474-1220320036888887


Q ss_pred             HH-HHHCCCH----HCCCCHH----HHHHHHHCCCCCCCCCEEEEEE----EEEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             88-7520120----0038725----6632431157321583134566----64344112321000012334431002322
Q gi|254781095|r  118 AL-RHGIGGF----HFFYGIP----GSIGGAAYMNAGANNCETSQYV----VEVHGIDRKGNQHVIPREQLKYQYRSSEI  184 (318)
Q Consensus       118 ~~-~~gl~Gl----E~l~gIP----GTVGGAi~mNAGayG~ei~d~i----~~V~~~d~~g~~~~l~~~e~~f~YR~S~~  184 (318)
                      .. ...+..+    ...++-.    |||||.++. +-..+ ++.-.+    ..|++...+| .++++-+|+--+|+.+.+
T Consensus        84 ~~~~~~~p~l~~a~~~ias~qIRn~aTiGGNi~~-a~p~~-D~~~~Llal~A~v~l~~~~g-~R~vpl~df~~g~~~t~l  160 (176)
T d1t3qc2          84 PTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAH-ADAGA-EMPFLMATLGATMYIASSAG-VRSVSATDFMKGHYFTDL  160 (176)
T ss_dssp             HHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHH-TCTTC-HHHHHHHHTTCEEEEEETTE-EEEEEHHHHEEETTEESC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEE-CCCCC-HHHHHHHHHHHEEEEECCCC-EEEEEHHHHCCCCCCCCC
T ss_conf             6531015699999972478125878751474100-23010-24689999741278607996-699899995044021057


Q ss_pred             CCCCCEEEEECCC
Q ss_conf             4676200100235
Q gi|254781095|r  185 TKDLIITHVVLRG  197 (318)
Q Consensus       185 ~~~~iIl~a~l~l  197 (318)
                      +++.+|+++.+-.
T Consensus       161 ~~~Eii~~I~iP~  173 (176)
T d1t3qc2         161 EAGEVLVRVEIPI  173 (176)
T ss_dssp             CTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEC
T ss_conf             9995699999627


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Quinoline 2-oxidoreductase medium subunit QorM
species: Pseudomonas putida [TaxId: 303]