PSIBLAST alignment of GI: 254781095 and protein with PDB id: 2q85
gi|151567952|pdb|2Q85|A Chain A, Crystal Structure Of E. Coli Mur B Bound To A Naphthyl Tetronic Acid Inihibitor Length = 342
>gi|157831940|pdb|1MBB|A Chain A, Oxidoreductase Length = 342
>gi|157831953|pdb|1MBT|A Chain A, Oxidoreductase Length = 342
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/339 (19%), Positives = 106/339 (31%), Gaps = 50/339 (14%)
Query: 24 NFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRG 82
N LK F NA+ + +D L P+ I+G GSN+L RG
Sbjct: 2 NHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLF-LEDYRG 60
Query: 83 VVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142
V+ G + + + VGA + L L+ G+ G IPG +G +
Sbjct: 61 TVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQ 120
Query: 143 NAGANNCETSQYV------------------VEVHGIDRKGNQHVIPREQLKYQYRSSEI 184
N GA E + E R +++ +
Sbjct: 121 NIGAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRL 180
Query: 185 TKDLIITHVVLRGFPESQ----NIISAAIANVCHHRETVQPIKEKTGGSTFKNPT----- 235
K+ + P GS FKNP
Sbjct: 181 PKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAET 240
Query: 236 ---------------------GHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATG 274
+A LI++ +G++ GGA + +IN DNA
Sbjct: 241 AKALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKS 300
Query: 275 YDLEYLGEQVRKKVFNQSGILLEWEIKRLGDFFDHQIVD 313
D+ L VR+KV + + LE E++ +G + V+
Sbjct: 301 EDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVE 339