RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781095|ref|YP_003065508.1|
UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter
asiaticus str. psy62]
(318 letters)
>gnl|CDD|184385 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 298
Score = 403 bits (1039), Expect = e-113
Identities = 128/300 (42%), Positives = 179/300 (59%), Gaps = 4/300 (1%)
Query: 9 LLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPS-DIPITIV 67
LL+E LRG+ EN PL + T FR GG A+ + +P DI DL+ FL LL +IP+T++
Sbjct: 1 LLKELLPALRGRLLENEPLARYTSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVL 60
Query: 68 GLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFH 127
G GSN+LVRD GIRGVV+RL G + IEV + + GA LA A G+ G
Sbjct: 61 GNGSNLLVRDGGIRGVVIRLGK-GLNEIEVEGNR-ITAGAGAPLIKLARFAAEAGLSGLE 118
Query: 128 FFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEI-TK 186
F GIPG++GGA +MNAGA ET+ + V +DR G + E+L + YR S + +
Sbjct: 119 FAAGIPGTVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLSNEELGFGYRHSALQEE 178
Query: 187 DLIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKS 246
LI+ + P + I A + + RE QP++ + GS FKNP GH A +LIE++
Sbjct: 179 GLIVLSATFQLEPGDKEEIKARMDELLARREATQPLEYPSAGSVFKNPPGHFAGKLIEEA 238
Query: 247 GCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGDF 306
G +G GGA++SE H NF+IN AT D+E L E V+K V + G+ LEWE++ +G+F
Sbjct: 239 GLKGYRIGGAQVSEKHANFIINTGGATAADIEDLIEHVQKTVKEKFGVELEWEVRIIGEF 298
>gnl|CDD|173115 PRK14652, PRK14652, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 302
Score = 179 bits (456), Expect = 8e-46
Identities = 109/303 (35%), Positives = 149/303 (49%), Gaps = 21/303 (6%)
Query: 11 RERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSD-IPITIVGL 69
R RG+ LR PL T R GG A+++ +P D L L + +P++I+G
Sbjct: 13 RVRGEVLRDA-----PLAPRTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGG 67
Query: 70 GSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFF 129
G+N LV DAG+RGVVLRL E + +++GA L A HG+ G F
Sbjct: 68 GANTLVADAGVRGVVLRLPQDFPG--ESTDGGRLVLGAGAPISRLPARAHAHGLVGMEFL 125
Query: 130 YGIPGSIGGAAYMNAGANNCETSQYV--VEVHGIDRKGNQHVIPREQLKYQYRSSEITKD 187
GIPG++GGA MNAG E V VE+ D G +P L Y YR+ +
Sbjct: 126 AGIPGTLGGAVAMNAGTKLGEMKDVVTAVELATADGAG---FVPAAALGYAYRTCRLPPG 182
Query: 188 LIITHVVLRGFP----ESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLI 243
+IT V +R P S+ ++ A R QP+ T GSTF NP G A +L+
Sbjct: 183 AVITRVEVRLRPGDVAASEALMRADRE----RRRRTQPLDRPTFGSTFTNPPGDYAGRLV 238
Query: 244 EKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRL 303
E G +G GGA S +H NF+ N AT D+ L R +V + GI LE E++ L
Sbjct: 239 EAVGLKGHRVGGAIWSPVHANFVTNLGGATARDVLALVRLARARVKERFGIALETEVRLL 298
Query: 304 GDF 306
G+F
Sbjct: 299 GEF 301
>gnl|CDD|161747 TIGR00179, murB, UDP-N-acetylenolpyruvoylglucosamine reductase.
This model describes MurB,
UDP-N-acetylenolpyruvoylglucosamine reductase, which is
also called UDP-N-acetylmuramate dehydrogenase. It is
part of the pathway for the biosynthesis of the
UDP-N-acetylmuramoyl-pentapeptide that is a precursor of
bacterial peptidoglycan.
Length = 284
Score = 177 bits (450), Expect = 4e-45
Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 14/288 (4%)
Query: 27 LKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPS-DIPITIVGLGSNILVRDAGIRGVVL 85
L + T ++ GGNA + P+ I L L D P+ I+G GSN+L+ D G GV++
Sbjct: 1 LAEFTTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRGGVII 60
Query: 86 RLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAG 145
L G + + VG + L AL++G+ G F GIPG++GGA MNAG
Sbjct: 61 NLG-KGIDIEDDEGEY-VHVGGGENWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMNAG 118
Query: 146 ANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLR-------GF 198
A E S+ +V + G + EQL + YR+S + +VL+ GF
Sbjct: 119 AYGVEISEVLVYATILLATGKTEWLTNEQLGFGYRTSIFQHKYV--GLVLKAEFQLTLGF 176
Query: 199 PESQN--IISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGA 256
+ I+A R + GS FKNP+ + A +LIE+ G +G + GGA
Sbjct: 177 GTRLDPETITAQQVFNKVCRMRTSHYPDPNAGSFFKNPSPNHAGRLIEECGLKGYQIGGA 236
Query: 257 KISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLG 304
+S+ H NF++N DNA D+ L E V+ +V + GILLE E+K +G
Sbjct: 237 AVSKQHANFLVNIDNAKSEDVLDLIEHVKAEVGEKYGILLEPEVKIIG 284
>gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 307
Score = 170 bits (432), Expect = 4e-43
Identities = 96/284 (33%), Positives = 157/284 (55%), Gaps = 5/284 (1%)
Query: 24 NFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRG 82
+ PLK+ T+ +TGGNA+ P +++ + ++IP+T +G GSNI++R+ GIRG
Sbjct: 22 DEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRG 81
Query: 83 VVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142
+V+ L + +IEV + +I G+ + ++ A + + G F GIPGSIGGA YM
Sbjct: 82 IVISLLS--LDHIEVSDDA-IIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYM 138
Query: 143 NAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKD-LIITHVVLRGFPES 201
NAGA E + ++ +G+ + ++L+ YR+S I K+ L++ P
Sbjct: 139 NAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLAPGK 198
Query: 202 QNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISEL 261
I A + ++ RE+ QP++ + GS F+ P GH A +LI+ S +G GG ++S
Sbjct: 199 MTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTK 258
Query: 262 HCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGD 305
H FM+N DN T D E L V+K V + GI L E++ +G+
Sbjct: 259 HAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIGE 302
>gnl|CDD|173116 PRK14653, PRK14653, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 297
Score = 156 bits (396), Expect = 7e-39
Identities = 97/282 (34%), Positives = 146/282 (51%), Gaps = 9/282 (3%)
Query: 24 NFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRGV 83
N +K F+ GG + P + + LL I + I+G G+N+L +D + V
Sbjct: 19 NEEMKCHVSFKIGGPVPLFAIPNSTNGFIETINLLKEGIEVKILGNGTNVLPKDEPMDFV 78
Query: 84 VLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMN 143
V+ S +I V N ++I + S K L A ++G+ GF YGIPGS+GGA YMN
Sbjct: 79 VV--STERLDDIFVDND-KIICESGLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMN 135
Query: 144 AGANNCETSQYVVEVHGIDRKGNQHV-IPREQLKYQYRSS--EITKDLIITHVVLRGFPE 200
AGA ET++ +VEV D G + + + + ++K+ YR+S + KDLII V +
Sbjct: 136 AGAYGWETAENIVEVVAYD--GKKIIRLGKNEIKFSYRNSIFKEEKDLIILRVTFKLKKG 193
Query: 201 SQNIISAAIANVCHHRETVQPIKEKTGGSTFKNP-TGHSAWQLIEKSGCRGLEFGGAKIS 259
++N I + R QP++ + GS FK P IEK G +G GGA+IS
Sbjct: 194 NKNEIYNLMLETMKKRVEKQPLEFPSAGSVFKRPRKDFYVGSAIEKLGLKGFSIGGAQIS 253
Query: 260 ELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIK 301
E H F+IN +NA D+ L E V+ K++ + LE EI+
Sbjct: 254 EKHAGFIINYNNAKAEDVLKLIEYVKDKIYENYNVELETEIE 295
>gnl|CDD|171497 PRK12436, PRK12436, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 305
Score = 144 bits (365), Expect = 3e-35
Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 17/309 (5%)
Query: 2 IYGRISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPS- 60
+Y +S +L E G +++ LK T + GG A+V P + +++ +
Sbjct: 6 VYEYLSTVLPE------GHVKQDEMLKNHTHIKVGGKADVFVAPTNYDEIQEVIKYANKY 59
Query: 61 DIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALR 120
+IP+T +G GSN++++D GIRG+ + L + + + V ++ + ++ AL
Sbjct: 60 NIPVTFLGNGSNVIIKDGGIRGITVSLIH--ITGVTVTG-TTIVAQCGAAIIDVSRIALD 116
Query: 121 HGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYR 180
H + G F GIPGS+GGA YMNAGA E S + E + G + +E ++ YR
Sbjct: 117 HNLTGLEFACGIPGSVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTKEAFEFGYR 176
Query: 181 SSEITKDLIITHVVLRGFPESQN----IISAAIANVCHHRETVQPIKEKTGGSTFKNPTG 236
S + +++L E + I A + ++ RE+ QP++ + GS FK P
Sbjct: 177 KSVFANN---HYIILEARFELEEGVYEEIKAKMDDLTFKRESKQPLEYPSCGSVFKRPPN 233
Query: 237 HSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILL 296
+ A +LI++SG +G GG ++S H FM+N DN T D L V+K V + G+ L
Sbjct: 234 NFAGKLIQESGLQGKRIGGVEVSLKHAGFMVNVDNGTAQDYIDLIHFVQKTVEEKFGVKL 293
Query: 297 EWEIKRLGD 305
E E++ +G+
Sbjct: 294 EREVRIIGE 302
>gnl|CDD|173112 PRK14649, PRK14649, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 295
Score = 137 bits (346), Expect = 5e-33
Identities = 86/297 (28%), Positives = 132/297 (44%), Gaps = 17/297 (5%)
Query: 21 FQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLT-LLPSDIPITIVGLGSNILVRDAG 79
+EN PL T +R GG A +P + +P+ +G GSN+LVRD G
Sbjct: 3 LRENEPLAPYTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG 62
Query: 80 IRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALR---HGIGGFHFFYGIPGSI 136
G+V R + E + E+ V A G +A +A R G G + G+PG+I
Sbjct: 63 FDGLVARYRGQRWELHEHGDTAEVWVEA---GAPMAGTARRLAAQGWAGLEWAEGLPGTI 119
Query: 137 GGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEI---------TKD 187
GGA Y NAG +T+ ++ + Y YR+S + +
Sbjct: 120 GGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSVHDFAYGYRTSVLKQLRADGITWRP 179
Query: 188 LIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSG 247
++ R + ++A + + R+ P G S FKNP G SA +LIE +G
Sbjct: 180 PLVLAARFRLHRDDPTALAARMEAIAAERKQKTPAGSSCG-SVFKNPPGDSAGRLIEAAG 238
Query: 248 CRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLG 304
+G G A+I+ H N++IN A D+ L + R +V Q GI LE E++ +G
Sbjct: 239 LKGTRIGDAEIATRHANYIINLGGARAADILRLIDLARTRVLAQFGIELELEVRIIG 295
>gnl|CDD|184781 PRK14651, PRK14651, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 273
Score = 133 bits (337), Expect = 5e-32
Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 16/278 (5%)
Query: 23 ENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRG 82
E PL + T GG AE+ + L ++ P ++G GSN+LV DAG+
Sbjct: 5 ERVPLARYTTLGVGGPAELWTV-ETHEQLAE-----ATEAPYRVLGGGSNLLVSDAGVPE 58
Query: 83 VVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142
V+RL F+ ++ VG L A R G+ G GIP +GGA M
Sbjct: 59 RVIRLGGE-FAEWDLDGW----VGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKM 113
Query: 143 NAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLRGFPESQ 202
NAG E + + V I G H ++L + YR S + ++T V L+ P +
Sbjct: 114 NAGTRFGEMADALHTVE-IVHDGGFHQYSPDELGFGYRHSGLPPGHVVTRVRLKLRPSTP 172
Query: 203 NIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELH 262
+ A +A V R+ QP K+K+ G FKNP G SA +LI+++G +G G A IS H
Sbjct: 173 EAVLAKMALVDAARKG-QP-KKKSAGCAFKNPPGDSAGRLIDEAGLKGTRVGDAMISPEH 230
Query: 263 CNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEI 300
NF++N AT D+ L +VR +V + LEWE+
Sbjct: 231 GNFIVNLGGATAADVHALLRRVRARV--GLPLELEWEL 266
>gnl|CDD|184384 PRK13904, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 257
Score = 127 bits (321), Expect = 4e-30
Identities = 81/242 (33%), Positives = 112/242 (46%), Gaps = 24/242 (9%)
Query: 66 IVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGG 125
I+G +N+L+ +L F I++ C I GA SGK + N A ++ +GG
Sbjct: 36 IIGGANNLLISPNPKNLAIL---GKNFDYIKIDGECLEIGGATKSGK-IFNYAKKNNLGG 91
Query: 126 FHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEIT 185
F F +PG++GG MNAG E S + + N I +E + + YRSS I
Sbjct: 92 FEFLGKLPGTLGGLVKMNAGLKEYEISNNLESI-----CTNGGWIEKEDIGFGYRSSGI- 145
Query: 186 KDLIITHVVL---RGF-PESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQ 241
+ +I GF E + N QP K + GS FKNP G A +
Sbjct: 146 -NGVILEARFKKTHGFDEELLEAFKSMRKN--------QP-KGPSFGSCFKNPKGDYAGR 195
Query: 242 LIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIK 301
LIE G +G GGA SE H NF++N AT D L E +K+V + GI LE E+
Sbjct: 196 LIEAVGLKGYCKGGAGFSEEHANFLVNLGGATFEDALDLIELAKKRVLEEFGINLEEEVI 255
Query: 302 RL 303
L
Sbjct: 256 IL 257
>gnl|CDD|173113 PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 302
Score = 116 bits (293), Expect = 5e-27
Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 20/289 (6%)
Query: 27 LKQITWFRTGGNAEVMFQPQDIHDLKY-FLTLLPSDIPITIVGLGSNILVRDAGIRGVVL 85
L T ++ GG +++ P+ I D ++ F + I I I+G GSNIL+ D +
Sbjct: 21 LANYTTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDE--EEIDF 78
Query: 86 RLSNAGFSN-IEVRNHCEMIVGARCSG--KSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142
+ G N IE+ H IV A C + L AL++ + G F YG+PG++GGA +M
Sbjct: 79 PIIYTGHLNKIEI--HDNQIV-AECGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWM 135
Query: 143 NAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEI-TKDLIITHVVLRGFPES 201
NA E S+ + ++ ID KG ++ +++Y+ S K+ I L +
Sbjct: 136 NARCFGNEISEILDKITFIDEKGKTICKKFKKEEFKYKISPFQNKNTFILKATLNLKKGN 195
Query: 202 QNIISAAIANVCHHRETVQPIKEKTGGSTFKN------PTGHSAWQLIEKSGCRGLEFGG 255
+ I + R + GSTFKN PTG Q+IE+ +GL GG
Sbjct: 196 KKHIEEIMKQNKQIRINKGHYLFPSSGSTFKNNKAFLKPTG----QIIEECKLKGLSIGG 251
Query: 256 AKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLG 304
A +S H NF+IN +NAT D++ L E+V+ +V ++G LLE E+ +G
Sbjct: 252 ATVSHYHGNFIININNATSKDIKTLIEKVKTEVQIKTGFLLEEEVLYIG 300
>gnl|CDD|173111 PRK14648, PRK14648, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 354
Score = 97.1 bits (241), Expect = 6e-21
Identities = 89/330 (26%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 22 QENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNILVRDAGI 80
+ N PL + FR GG A+ +P+ L+ + + IP++++G GSN+L+ D G+
Sbjct: 13 RRNVPLAERCSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGV 72
Query: 81 RGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSAL-----RHGIGGFHFFYGIPGS 135
G++L L + + + ++V A G L +AL H + G F G+PGS
Sbjct: 73 PGLMLSLRRFRSLHTQTQRDGSVLVHA---GAGLPVAALLAFCAHHALRGLETFAGLPGS 129
Query: 136 IGGAAYMNA-----GANNCETSQYVVEVHGI---------------DRKGN--------- 166
+GGAAYMNA +C S + +H + D++G
Sbjct: 130 VGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRGECLGLDGGPF 189
Query: 167 -----QHVIPREQLKYQYRSSEITKD---------LIITHVVLRGFPESQNIISAAIANV 212
Q V R + Y+ S +I + +R P + I +
Sbjct: 190 TCSSFQTVFARAG-DWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNPAQIRKHMQEK 248
Query: 213 CHHRETVQPIKEKTGGSTFKN--PTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINAD 270
R + + + GS FKN G + LIE++G RG G A+++ H N +IN
Sbjct: 249 IADRISKGQFRFPSAGSAFKNNPAFGKPSGILIEEAGLRGTSCGAAQVAPWHGNLIINTG 308
Query: 271 NATGYDLEYLGEQVRKKVFNQSGILLEWEI 300
NAT + + L VR++VF G+ LE EI
Sbjct: 309 NATAHQVRTLLRVVRQRVFETHGVWLEREI 338
>gnl|CDD|184383 PRK13903, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 363
Score = 76.9 bits (190), Expect = 7e-15
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 23 ENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSD-IPITIVGLGSNILVRDAGIR 81
E+ PL +T R GG A + +L + L + P+ ++G GSN+++ D G
Sbjct: 17 EDVPLAPLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD 76
Query: 82 GVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAY 141
G V+R++ G + GA + + G+GG GIPGS G
Sbjct: 77 GTVVRVATRGVTVDCGGGLVRAEAGAVWD--DVVARTVEAGLGGLECLSGIPGSAGATPV 134
Query: 142 MNAGANNCETSQYVVEVHGIDRK-GNQHVIPREQLKYQYRSS 182
N GA E S + V +DR+ G +P L + YR+S
Sbjct: 135 QNVGAYGQEVSDTITRVRLLDRRTGEVRWVPAADLGFGYRTS 176
Score = 31.1 bits (71), Expect = 0.44
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 239 AWQLIEKSG-CRGLEFGG--AKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL 295
AW LIE++G +G GG A++S H + N AT DL L +VR V + G+
Sbjct: 293 AW-LIERAGFGKGYPGGGAPARLSTKHTLALTNRGGATTADLVALAREVRDGVRDAFGVT 351
Query: 296 LEWE 299
L E
Sbjct: 352 LVPE 355
>gnl|CDD|178820 PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 334
Score = 73.6 bits (182), Expect = 6e-14
Identities = 84/340 (24%), Positives = 126/340 (37%), Gaps = 71/340 (20%)
Query: 20 KFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLP-SDIPITIVGLGSNIL-VRD 77
+ Q N LK + F A + + + L L + +P+ ++G GSN+L D
Sbjct: 2 QLQMNHSLKPLNTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTED 61
Query: 78 AGIRGVVLRLSNAGFSNIEVRNHCE--MI--VGARCSGKSLANSALRHGIGGFHFFYGIP 133
G VL G IEV + + VGA + L L+ G+ G IP
Sbjct: 62 --FDGTVLLNRIKG---IEVLSEDDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIP 116
Query: 134 GSIGGAAYMNAGANNCETSQYVVEVHGIDRK-GNQHVIPREQLKYQYRSSEITKD----- 187
G++G A N GA E V +D G + + ++ YR S I K
Sbjct: 117 GTVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSAAECRFGYRDS-IFKHEYPDR 175
Query: 188 LIITHVVLR-------------------GFPESQNIISAAIANVCHHRETVQPIKEKTG- 227
IT V R +Q++ A VC R + P + G
Sbjct: 176 YAITAVGFRLPKQWQPVLDYGDLARLDPDTVTAQDVFDA----VCAIRRSKLPDPKVLGN 231
Query: 228 -GSTFKNP-----------TGHS----------------AWQLIEKSGCRGLEFGGAKIS 259
GS FKNP + W LI++ G +G + GGA +
Sbjct: 232 AGSFFKNPVVSAEQFEALLAQYPDIPHYPQADGSVKLAAGW-LIDQCGLKGFQIGGAAVH 290
Query: 260 ELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWE 299
E ++N NATG D+ L +++ V + G+ LE E
Sbjct: 291 EKQALVLVNYGNATGADVLALARHIQQDVREKFGVELEPE 330
>gnl|CDD|183984 PRK13340, PRK13340, alanine racemase; Reviewed.
Length = 406
Score = 31.9 bits (73), Expect = 0.21
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 56 TLLPSDIPITIVGLGSN---ILVRDAGIRGVVLRLSNAGFSNIE--VRNHCEMIVGARCS 110
+++ +++P +G+ SN VR+ G G +LR+ +A + IE +R E ++G
Sbjct: 86 SIIKANVPC--IGIASNEEARRVRELGFTGQLLRVRSASPAEIEQALRYDLEELIGDDEQ 143
Query: 111 GKSLANSALRHG 122
K LA A ++G
Sbjct: 144 AKLLAAIAKKNG 155
>gnl|CDD|184003 PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 278
Score = 29.7 bits (67), Expect = 1.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 235 TGHSAWQLIEKSGCRGLEFG---------GAKISELHCNFMINADN-ATG 274
T +S +L+E +G +G+E G K+ E+H N+ I N A G
Sbjct: 222 TQYSNHELVELAGTQGVELLNWLAMRGALGGKVREVHRNYHIPISNTAAG 271
>gnl|CDD|161880 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases.
Length = 522
Score = 29.1 bits (65), Expect = 1.4
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 236 GHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGIL 295
GH+ KS C L FG AK CN + N D EY+ E +++ V G
Sbjct: 16 GHA------KSIC--LNFGYAKYYNGTCNLRFDDTNPVKEDPEYV-ESIKRDV-EWLGFK 65
Query: 296 LEWEIKRLGDFFD 308
E +I+ D+FD
Sbjct: 66 WEGKIRYSSDYFD 78
>gnl|CDD|162850 TIGR02421, QEGLA, conserved hypothetical protein. Members of this
family include a possible metal-binding motif HEXXXH
and, nearby, a perfectly conserved motif QEGLA. All
members belong to the Proteobacteria, including
Agrobacterium tumefaciens and several species of Vibrio
and Pseudomonas, and are found in only one copy per
chromosome (Vibrio vulnificus, with two chromosomes, has
two). The function is unknown.
Length = 366
Score = 27.7 bits (62), Expect = 3.7
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 132 IPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIIT 191
+ + M GA+ + +Y+ E +G D + R +R TKD
Sbjct: 247 LALRVVAVDMMLKGADFIQVFRYLTEQYGFDAAQAFSITQR-----VFRGGGFTKD---- 297
Query: 192 HVVLRGFPESQNIISAAI 209
+ LRGF E N I
Sbjct: 298 ALYLRGFVEVLNHIRQGG 315
>gnl|CDD|147809 pfam05853, DUF849, Prokaryotic protein of unknown function
(DUF849). This family consists of several hypothetical
prokaryotic proteins with no known function.
Length = 274
Score = 27.5 bits (62), Expect = 5.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 44 QPQDIHDLKYFLTLLPSDIPITIVGLGSNIL 74
P D +L + L LP ++ G+G N L
Sbjct: 182 MPADPENLLHMLRTLPRGATWSVAGIGRNQL 212
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 27.2 bits (61), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 267 INADNATGYDLEYLGEQVR 285
I AD ATGY +E+ GE +R
Sbjct: 193 IGADGATGYAIEFAGEAIR 211
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine transglycosylases, various
specificities. Different tRNA-guanine transglycosylases
catalyze different tRNA base modifications. Two guanine
base substitutions by different enzymes described by the
model are involved in generating queuosine at position
34 in bacterial tRNAs and archaeosine at position 15 in
archaeal tRNAs. This model is designed for fragment
searching, so the superfamily is used loosely.
Length = 367
Score = 27.0 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 37 GNAEVMFQPQDIHD-LKYFLTLLPSDIPITIVGLGSNILVRDAGIRGV 83
G V +D+ L++ LLP D P ++G+G+ L+ +A G+
Sbjct: 210 GGVSVGEPKRDMLRILEHVAPLLPKDKPRYLMGVGTPELLANAVSLGI 257
>gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 27.1 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Query: 20 KFQE---NFPLKQITWFRTGGNAEVMFQ 44
KFQ NF +Q+TWFR E ++
Sbjct: 317 KFQTASRNFAKRQMTWFRN----EPIYH 340
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.140 0.423
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,285,163
Number of extensions: 339036
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 27
Length of query: 318
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 225
Effective length of database: 3,984,929
Effective search space: 896609025
Effective search space used: 896609025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)