RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781095|ref|YP_003065508.1|
UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter
asiaticus str. psy62]
(318 letters)
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan
synthesis, cell WALL, cell division, oxidoreductase,
NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus
aureus} (A:231-304)
Length = 74
Score = 98.9 bits (247), Expect = 8e-22
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLG 281
++ + GS F+ P GH A +LI+ S +G GG ++S H FM+N DN T D E L
Sbjct: 1 LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLI 60
Query: 282 EQVRKKVFNQSGI 294
V+K V + GI
Sbjct: 61 HYVQKTVKEKFGI 73
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan
biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine,
flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus
caldophilus} PDB: 2gqu_A* (A:199-260)
Length = 62
Score = 89.6 bits (223), Expect = 4e-19
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 229 STFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKV 288
FKNP G SA +LI++ G +GL G A IS H NF++N A D+ L +V++++
Sbjct: 1 CAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQEEL 60
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase;
peptidoglycan biosynthesis, enolpyruvyl-UDP-N-
acetylglucosamine, flavin adenine dinucleotide; HET:
FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
(A:1-69,A:261-268)
Length = 77
Score = 85.9 bits (213), Expect = 6e-18
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 17 LRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR 76
+ E LK T GG AE+ + ++ P ++G GSN+LV
Sbjct: 1 MEFMRVERVLLKDYTTLGVGGPAELWTVETREELKRA------TEAPYRVLGNGSNLLVL 54
Query: 77 DAGIRGVVLRLSNA 90
D G+ V+RL+
Sbjct: 55 DEGVPERVIRLAGE 68
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, copper,
molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN
FAD; 1.09A {Oligotropha carboxidovorans OM5} (C:1-176)
Length = 176
Score = 83.0 bits (205), Expect = 4e-17
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 11/174 (6%)
Query: 37 GNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRG-VVLRLSNAGFSNI 95
+ +P+ I D LT L D G +++ ++ L + G
Sbjct: 3 PGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVG 62
Query: 96 EVRNHCEMIVGARCSGKSLANSAL---------RHGIGGFHFFYGIPGSIGGAAYMNAGA 146
++++GA + +L S + G+IGG A
Sbjct: 63 IREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPG 122
Query: 147 NNCETSQYVVEVHGIDRKGN-QHVIPREQLKYQYRSSEITKDLIITHVVLRGFP 199
N+ + ++ + I ++T + + P
Sbjct: 123 NDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPP 176
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase;
oxidoreductase, structural genomics, center for
structural genomics of infectious diseases, csgid; HET:
FAD; 2.20A {Vibrio cholerae} (A:1-82,A:334-357)
Length = 106
Score = 78.7 bits (194), Expect = 9e-16
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 15 KQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNI 73
+ + Q LK F A + + I DLK + +P I+G GSN
Sbjct: 7 PKTTXQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNX 66
Query: 74 LVRDAGIRGVVLRL 87
L G ++
Sbjct: 67 LFTC-HYTGXIVVN 79
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase;
oxidoreductase, structural genomics, center for
structural genomics of infectious diseases, csgid; HET:
FAD; 2.20A {Vibrio cholerae} (A:277-333)
Length = 57
Score = 75.8 bits (187), Expect = 7e-15
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 239 AWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGI 294
A LI+++G +G + GGAK+ ++N +A+ D+ L ++++VFN GI
Sbjct: 1 AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLXLAADIQQRVFNCYGI 56
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine
reductase; peptidoglycan synthesis, cell WALL, cell
division, oxidoreductase, NADP; HET: FAD EPU; 1.80A
{Escherichia coli} (A:1-66,A:320-340)
Length = 87
Score = 74.4 bits (183), Expect = 2e-14
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 26 PLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRGVV 84
LK F NA+ + +D L P+ I+G GSN+L + RG V
Sbjct: 2 SLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLE-DYRGTV 60
Query: 85 LRLS 88
+
Sbjct: 61 IINR 64
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan
synthesis, cell WALL, cell division, oxidoreductase,
NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus
aureus} (A:100-230)
Length = 131
Score = 71.2 bits (174), Expect = 2e-13
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162
+I G+ + ++ A + + G F GIPGSIGGA YMNAGA E + ++
Sbjct: 12 IIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVN 71
Query: 163 RKGNQHVIPREQLKYQYRSSEITKDL-IITHVVLRGFPESQNIISAAIANVCHHRETVQP 221
+G+ + ++L+ YR+S I K+ ++ P I A + ++ RE+ QP
Sbjct: 72 EQGSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQP 131
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan
biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine,
flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus
caldophilus} PDB: 2gqu_A* (A:70-198)
Length = 129
Score = 68.5 bits (167), Expect = 1e-12
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162
VGA L A R G+ G GIP +GGA MNAG E + + V
Sbjct: 7 GWVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNAGTRFGEMADALEAVEVFH 66
Query: 163 RKGNQHVIPREQLKYQYRSSEITKDLIITHVVLRGFPESQNIISAAIANVCHHRETVQPI 222
HV E+L + YR S + I+T V L+ + I +A V R+ QP
Sbjct: 67 DGA-FHVYCPEELGFGYRKSHLPPGGIVTRVRLKLKERPKEEILRRMAEVDRARKG-QPK 124
Query: 223 KEKTG 227
++ G
Sbjct: 125 RKSAG 129
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase;
peptidoglycan synthesis, cell WALL, cell division,
oxidoreductase, NADP, flavoprotein, FAD; HET: FAD;
2.30A {Staphylococcus aureus} (A:1-99,A:305-326)
Length = 121
Score = 63.4 bits (154), Expect = 4e-11
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 18 RGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVR 76
K + + PLK+ T+ +TGGNA+ P +++ + ++IP+T +G GSNI++R
Sbjct: 28 NEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR 87
Query: 77 DAGIRGVVLRLS 88
+ GIRG+V+ L
Sbjct: 88 EGGIRGIVISLL 99
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine
reductase; peptidoglycan synthesis, cell WALL, cell
division, oxidoreductase, NADP; HET: FAD EPU; 1.80A
{Escherichia coli} (A:273-319)
Length = 47
Score = 60.4 bits (147), Expect = 3e-10
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 249 RGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGI 294
+G++ GGA + +IN DNA D+ L VR+KV + +
Sbjct: 1 KGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNV 46
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine
reductase; peptidoglycan synthesis, cell WALL, cell
division, oxidoreductase, NADP; HET: FAD EPU; 1.80A
{Escherichia coli} (A:67-190)
Length = 124
Score = 55.3 bits (133), Expect = 9e-09
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162
+ VGA + L L+ G+ G IPG +G + N GA E + V ++
Sbjct: 13 LHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVE 72
Query: 163 RK-GNQHVIPREQLKYQYRS----SEITKDLIITHVVLRGFPESQNIIS 206
G Q + ++ ++ YR E I V LR E Q +++
Sbjct: 73 LATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLT 121
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase;
oxidoreductase, structural genomics, center for
structural genomics of infectious diseases, csgid; HET:
FAD; 2.20A {Vibrio cholerae} (A:83-206)
Length = 124
Score = 53.8 bits (129), Expect = 3e-08
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162
+ V SL + + GIGG IPG G A N GA E V +
Sbjct: 13 LHVAGGEDWPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLC 72
Query: 163 RK-GNQHVIPREQLKYQYRSSEITKDL----IITHVVLRGFPESQNIIS 206
+ G + E+ ++ YR S L ++T V L+ Q II
Sbjct: 73 LETGTVKRLTXEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQ 121
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} (C:1-176)
Length = 176
Score = 43.3 bits (102), Expect = 4e-05
Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 13/166 (7%)
Query: 43 FQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIR-GVVLRLSNAGFSNIEVRNHC 101
P+ + + L L SD + G +++ + ++ ++
Sbjct: 9 HAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGS 68
Query: 102 EMIVGARCSGKSLANSALRHGIGGF--HFFYGIPG-------SIGGAAYMNAGANNCETS 152
+++GA L +S + I +IGG N+
Sbjct: 69 TVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPAL 128
Query: 153 QYVV--EVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLR 196
V ++ + +P + + + ++ ++ + +
Sbjct: 129 SIAVEAHFV-LEGPNGRRTVPADGFFLGTYMTLLEENEVMVEIRVP 173
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum,
MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (C:1-174)
Length = 174
Score = 36.8 bits (85), Expect = 0.004
Identities = 17/167 (10%), Positives = 42/167 (25%), Gaps = 18/167 (10%)
Query: 43 FQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIR-GVVLRLSNAGFSNIEVRNHC 101
P + ++ L P D I G L+ + ++ L N ++
Sbjct: 9 RAPASLQEVIQVLADDP-DARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAG 67
Query: 102 EMIVGARCSGKSLANSALRHG-----------IGGFHFFYGIPGSIGGAAYMNAGANNCE 150
+ VGA + + G++GG+
Sbjct: 68 ILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAV--RNRGTLGGSLAHADAGAEMP 125
Query: 151 TSQYV--VEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVL 195
++ G + + +++ ++ V +
Sbjct: 126 FLMATLGATMYIASSAG-VRSVSATDFMKGHYFTDLEAGEVLVRVEI 171
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase,
flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays}
(A:1-245,A:495-534)
Length = 285
Score = 29.6 bits (65), Expect = 0.59
Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 17/184 (9%)
Query: 32 WFRTGGNAEVMFQPQDIHDLKYFLTLL----PSDIPITIVGLGSNILVRDAGIRGVVLRL 87
T + P DL L+ I G G +++ + GVV+ +
Sbjct: 62 GNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNM 121
Query: 88 SNAGFSNIEVR-----NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142
++ G + R + + G + ++L G+ + + ++GG
Sbjct: 122 ASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSN 181
Query: 143 NA-GANNCETSQYVVEVHGIDRKGNQHVIPREQ------LKYQYRSSEITKDLIITHVVL 195
+ V +D + L +IT +
Sbjct: 182 AGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFG-VITRARI 240
Query: 196 RGFP 199
P
Sbjct: 241 AVEP 244
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease,
hydrolase; 2.00A {Saccharomyces cerevisiae}
(A:78-193,A:406-420)
Length = 131
Score = 26.3 bits (58), Expect = 5.7
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 276 DLEYLGEQVRKK-------VFNQSGILLEW 298
DL LG VRK + ++ ++
Sbjct: 86 DLSLLGSHVRKATYQTYAPILYENDHFFDY 115
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase; HET: FAD; 1.70A {Bos taurus}
(A:1-113,A:330-420)
Length = 204
Score = 25.9 bits (56), Expect = 6.7
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 104 IVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNA 144
+VG+ +G A L+H Y G
Sbjct: 11 VVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGV 51
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.140 0.423
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,507,537
Number of extensions: 112154
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 21
Length of query: 318
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 230
Effective length of database: 1,981,209
Effective search space: 455678070
Effective search space used: 455678070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)