RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter asiaticus str. psy62] (318 letters) >1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:231-304) Length = 74 Score = 98.9 bits (247), Expect = 8e-22 Identities = 29/73 (39%), Positives = 41/73 (56%) Query: 222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLG 281 ++ + GS F+ P GH A +LI+ S +G GG ++S H FM+N DN T D E L Sbjct: 1 LEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLI 60 Query: 282 EQVRKKVFNQSGI 294 V+K V + GI Sbjct: 61 HYVQKTVKEKFGI 73 >2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:199-260) Length = 62 Score = 89.6 bits (223), Expect = 4e-19 Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 229 STFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKV 288 FKNP G SA +LI++ G +GL G A IS H NF++N A D+ L +V++++ Sbjct: 1 CAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQEEL 60 >2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:1-69,A:261-268) Length = 77 Score = 85.9 bits (213), Expect = 6e-18 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 17 LRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVR 76 + E LK T GG AE+ + ++ P ++G GSN+LV Sbjct: 1 MEFMRVERVLLKDYTTLGVGGPAELWTVETREELKRA------TEAPYRVLGNGSNLLVL 54 Query: 77 DAGIRGVVLRLSNA 90 D G+ V+RL+ Sbjct: 55 DEGVPERVIRLAGE 68 >1n62_C Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} (C:1-176) Length = 176 Score = 83.0 bits (205), Expect = 4e-17 Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 11/174 (6%) Query: 37 GNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRG-VVLRLSNAGFSNI 95 + +P+ I D LT L D G +++ ++ L + G Sbjct: 3 PGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVG 62 Query: 96 EVRNHCEMIVGARCSGKSLANSAL---------RHGIGGFHFFYGIPGSIGGAAYMNAGA 146 ++++GA + +L S + G+IGG A Sbjct: 63 IREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPG 122 Query: 147 NNCETSQYVVEVHGIDRKGN-QHVIPREQLKYQYRSSEITKDLIITHVVLRGFP 199 N+ + ++ + I ++T + + P Sbjct: 123 NDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPP 176 >3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:1-82,A:334-357) Length = 106 Score = 78.7 bits (194), Expect = 9e-16 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Query: 15 KQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNI 73 + + Q LK F A + + I DLK + +P I+G GSN Sbjct: 7 PKTTXQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNX 66 Query: 74 LVRDAGIRGVVLRL 87 L G ++ Sbjct: 67 LFTC-HYTGXIVVN 79 >3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:277-333) Length = 57 Score = 75.8 bits (187), Expect = 7e-15 Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 239 AWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGI 294 A LI+++G +G + GGAK+ ++N +A+ D+ L ++++VFN GI Sbjct: 1 AGWLIDQAGLKGHQIGGAKVHPKQALVIVNTGDASAQDVLXLAADIQQRVFNCYGI 56 >1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:1-66,A:320-340) Length = 87 Score = 74.4 bits (183), Expect = 2e-14 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 26 PLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRGVV 84 LK F NA+ + +D L P+ I+G GSN+L + RG V Sbjct: 2 SLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLE-DYRGTV 60 Query: 85 LRLS 88 + Sbjct: 61 IINR 64 >1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:100-230) Length = 131 Score = 71.2 bits (174), Expect = 2e-13 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162 +I G+ + ++ A + + G F GIPGSIGGA YMNAGA E + ++ Sbjct: 12 IIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVN 71 Query: 163 RKGNQHVIPREQLKYQYRSSEITKDL-IITHVVLRGFPESQNIISAAIANVCHHRETVQP 221 +G+ + ++L+ YR+S I K+ ++ P I A + ++ RE+ QP Sbjct: 72 EQGSLIKLTTKELELDYRNSIIQKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQP 131 >2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* (A:70-198) Length = 129 Score = 68.5 bits (167), Expect = 1e-12 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162 VGA L A R G+ G GIP +GGA MNAG E + + V Sbjct: 7 GWVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNAGTRFGEMADALEAVEVFH 66 Query: 163 RKGNQHVIPREQLKYQYRSSEITKDLIITHVVLRGFPESQNIISAAIANVCHHRETVQPI 222 HV E+L + YR S + I+T V L+ + I +A V R+ QP Sbjct: 67 DGA-FHVYCPEELGFGYRKSHLPPGGIVTRVRLKLKERPKEEILRRMAEVDRARKG-QPK 124 Query: 223 KEKTG 227 ++ G Sbjct: 125 RKSAG 129 >1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:1-99,A:305-326) Length = 121 Score = 63.4 bits (154), Expect = 4e-11 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 18 RGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVR 76 K + + PLK+ T+ +TGGNA+ P +++ + ++IP+T +G GSNI++R Sbjct: 28 NEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR 87 Query: 77 DAGIRGVVLRLS 88 + GIRG+V+ L Sbjct: 88 EGGIRGIVISLL 99 >1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:273-319) Length = 47 Score = 60.4 bits (147), Expect = 3e-10 Identities = 15/46 (32%), Positives = 24/46 (52%) Query: 249 RGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGI 294 +G++ GGA + +IN DNA D+ L VR+KV + + Sbjct: 1 KGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNV 46 >1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:67-190) Length = 124 Score = 55.3 bits (133), Expect = 9e-09 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162 + VGA + L L+ G+ G IPG +G + N GA E + V ++ Sbjct: 13 LHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDSVE 72 Query: 163 RK-GNQHVIPREQLKYQYRS----SEITKDLIITHVVLRGFPESQNIIS 206 G Q + ++ ++ YR E I V LR E Q +++ Sbjct: 73 LATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLT 121 >3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:83-206) Length = 124 Score = 53.8 bits (129), Expect = 3e-08 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGID 162 + V SL + + GIGG IPG G A N GA E V + Sbjct: 13 LHVAGGEDWPSLVSWCVEQGIGGLENLALIPGCAGSAPIQNIGAYGVEFKDVCDYVEYLC 72 Query: 163 RK-GNQHVIPREQLKYQYRSSEITKDL----IITHVVLRGFPESQNIIS 206 + G + E+ ++ YR S L ++T V L+ Q II Sbjct: 73 LETGTVKRLTXEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQ 121 >1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (C:1-176) Length = 176 Score = 43.3 bits (102), Expect = 4e-05 Identities = 17/166 (10%), Positives = 49/166 (29%), Gaps = 13/166 (7%) Query: 43 FQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIR-GVVLRLSNAGFSNIEVRNHC 101 P+ + + L L SD + G +++ + ++ ++ Sbjct: 9 HAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGS 68 Query: 102 EMIVGARCSGKSLANSALRHGIGGF--HFFYGIPG-------SIGGAAYMNAGANNCETS 152 +++GA L +S + I +IGG N+ Sbjct: 69 TVVIGAMTVENDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPAL 128 Query: 153 QYVV--EVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLR 196 V ++ + +P + + + ++ ++ + + Sbjct: 129 SIAVEAHFV-LEGPNGRRTVPADGFFLGTYMTLLEENEVMVEIRVP 173 >1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (C:1-174) Length = 174 Score = 36.8 bits (85), Expect = 0.004 Identities = 17/167 (10%), Positives = 42/167 (25%), Gaps = 18/167 (10%) Query: 43 FQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIR-GVVLRLSNAGFSNIEVRNHC 101 P + ++ L P D I G L+ + ++ L N ++ Sbjct: 9 RAPASLQEVIQVLADDP-DARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAG 67 Query: 102 EMIVGARCSGKSLANSALRHG-----------IGGFHFFYGIPGSIGGAAYMNAGANNCE 150 + VGA + + G++GG+ Sbjct: 68 ILSVGAMVTHFRNKTDPTVAKCVPILPKVLAHVAHQAV--RNRGTLGGSLAHADAGAEMP 125 Query: 151 TSQYV--VEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVL 195 ++ G + + +++ ++ V + Sbjct: 126 FLMATLGATMYIASSAG-VRSVSATDFMKGHYFTDLEAGEVLVRVEI 171 >1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} (A:1-245,A:495-534) Length = 285 Score = 29.6 bits (65), Expect = 0.59 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 17/184 (9%) Query: 32 WFRTGGNAEVMFQPQDIHDLKYFLTLL----PSDIPITIVGLGSNILVRDAGIRGVVLRL 87 T + P DL L+ I G G +++ + GVV+ + Sbjct: 62 GNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNM 121 Query: 88 SNAGFSNIEVR-----NHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142 ++ G + R + + G + ++L G+ + + ++GG Sbjct: 122 ASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSN 181 Query: 143 NA-GANNCETSQYVVEVHGIDRKGNQHVIPREQ------LKYQYRSSEITKDLIITHVVL 195 + V +D + L +IT + Sbjct: 182 AGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFG-VITRARI 240 Query: 196 RGFP 199 P Sbjct: 241 AVEP 244 >1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A {Saccharomyces cerevisiae} (A:78-193,A:406-420) Length = 131 Score = 26.3 bits (58), Expect = 5.7 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 7/30 (23%) Query: 276 DLEYLGEQVRKK-------VFNQSGILLEW 298 DL LG VRK + ++ ++ Sbjct: 86 DLSLLGSHVRKATYQTYAPILYENDHFFDY 115 >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase; HET: FAD; 1.70A {Bos taurus} (A:1-113,A:330-420) Length = 204 Score = 25.9 bits (56), Expect = 6.7 Identities = 8/41 (19%), Positives = 12/41 (29%) Query: 104 IVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNA 144 +VG+ +G A L+H Y G Sbjct: 11 VVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGV 51 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.140 0.423 Gapped Lambda K H 0.267 0.0584 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,507,537 Number of extensions: 112154 Number of successful extensions: 262 Number of sequences better than 10.0: 1 Number of HSP's gapped: 256 Number of HSP's successfully gapped: 21 Length of query: 318 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 230 Effective length of database: 1,981,209 Effective search space: 455678070 Effective search space used: 455678070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.3 bits)