RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter asiaticus str. psy62] (318 letters) >1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Score = 254 bits (649), Expect = 2e-68 Identities = 99/303 (32%), Positives = 164/303 (54%), Gaps = 7/303 (2%) Query: 6 ISRLLRERGKQLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPI 64 I + L++ K + + PLK+ T+ +TGGNA+ P +++ + ++IP+ Sbjct: 18 IYQALQQLIP--NEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPV 75 Query: 65 TIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIG 124 T +G GSNI++R+ GIRG+V+ L + +IEV + +I G+ + ++ A + + Sbjct: 76 TYLGNGSNIIIREGGIRGIVISLLS--LDHIEVSDDA-IIAGSGAAIIDVSRVARDYALT 132 Query: 125 GFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEI 184 G F GIPGSIGGA YMNAGA E + ++ +G+ + ++L+ YR+S I Sbjct: 133 GLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSII 192 Query: 185 TKD-LIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLI 243 K+ L++ P I A + ++ RE+ QP++ + GS F+ P GH A +LI Sbjct: 193 QKEHLVVLEAAFTLAPGKMTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLI 252 Query: 244 EKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRL 303 + S +G GG ++S H FM+N DN T D E L V+K V + GI L E++ + Sbjct: 253 QDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRII 312 Query: 304 GDF 306 G+ Sbjct: 313 GEH 315 >3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Length = 357 Score = 193 bits (491), Expect = 4e-50 Identities = 76/338 (22%), Positives = 122/338 (36%), Gaps = 48/338 (14%) Query: 16 QLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNIL 74 + + Q LK F A + + I DLK + +P I+G GSN+L Sbjct: 8 KTTMQIQLGANLKPYHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNML 67 Query: 75 VRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPG 134 +V+ N G + + ++ + V SL + + GIGG IPG Sbjct: 68 FTCHYTGMIVVNRLN-GIEHQQDDDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPG 126 Query: 135 SIGGAAYMNAGANNCETSQYVVEVHGID-RKGNQHVIPREQLKYQYRSSEITKD----LI 189 G A N GA E V + G + E+ ++ YR S + Sbjct: 127 CAGSAPIQNIGAYGVEFKDVCDYVEYLCLETGTVKRLTMEECQFGYRDSIFKHQLYQKAV 186 Query: 190 ITHVVLRGFPESQNIISAAIANVC----------------HHRETVQPIKEKTGGSTFKN 233 +T V L+ Q II + P GS FKN Sbjct: 187 VTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHDVYQRVCATRMEKLPDPAVMGNAGSFFKN 246 Query: 234 PTGH-------------------------SAWQLIEKSGCRGLEFGGAKISELHCNFMIN 268 P +A LI+++G +G + GGAK+ ++N Sbjct: 247 PVISQQAFARLQIEHPDVVAYPAEQGVKVAAGWLIDQAGLKGHQIGGAKVHPKQALVIVN 306 Query: 269 ADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGDF 306 +A+ D+ L ++++VFN GI LE E++ +G+ Sbjct: 307 TGDASAQDVLMLAADIQQRVFNCYGIELEHEVRFIGES 344 >2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Length = 268 Score = 185 bits (470), Expect = 1e-47 Identities = 88/278 (31%), Positives = 127/278 (45%), Gaps = 18/278 (6%) Query: 23 ENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRG 82 E LK T GG AE+ + + +LK + P ++G GSN+LV D G+ Sbjct: 7 ERVLLKDYTTLGVGGPAEL-WTVETREELKRAT-----EAPYRVLGNGSNLLVLDEGVPE 60 Query: 83 VVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYM 142 V+R + + VGA L A R G+ G GIP +GGA M Sbjct: 61 RVIR-----LAGEFQTYDLKGWVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKM 115 Query: 143 NAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLRGFPESQ 202 NAG E +E + G HV E+L + YR S + I+T V L+ + Sbjct: 116 NAGTRFGEM-ADALEAVEVFHDGAFHVYCPEELGFGYRKSHLPPGGIVTRVRLKLKERPK 174 Query: 203 NIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELH 262 I +A V R+ K K+ G FKNP G SA +LI++ G +GL G A IS H Sbjct: 175 EEILRRMAEVDRARK--GQPKRKSAGCAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEH 232 Query: 263 CNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEI 300 NF++N A D+ L +V++++ + LEWE+ Sbjct: 233 GNFIVNLGQARAKDVLELVRRVQEEL----PLELEWEV 266 >1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Length = 340 Score = 176 bits (447), Expect = 5e-45 Identities = 78/327 (23%), Positives = 124/327 (37%), Gaps = 50/327 (15%) Query: 27 LKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPS-DIPITIVGLGSNILVRDAGIRGVVL 85 LK F NA+ + +D L + P+ I+G GSN+L + V++ Sbjct: 3 LKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVII 62 Query: 86 RLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAG 145 G + + + VGA + L L+ G+ G IPG +G + N G Sbjct: 63 NRIK-GIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIG 121 Query: 146 ANNCETSQYVVEVHGIDR-KGNQHVIPREQLKYQYRSS----EITKDLIITHVVLRGFPE 200 A E + V ++ G Q + ++ ++ YR S E I V LR E Sbjct: 122 AYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKE 181 Query: 201 SQNIISAAIAN---------------VCHHRETVQPIKEKTG--GSTFKNP--------- 234 Q +++ VCH R T P + G G+ FKNP Sbjct: 182 WQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGAFFKNPVVSAETAKA 241 Query: 235 -----------------TGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDL 277 +A LI++ +G++ GGA + +IN DNA D+ Sbjct: 242 LLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDV 301 Query: 278 EYLGEQVRKKVFNQSGILLEWEIKRLG 304 L VR+KV + + LE E++ +G Sbjct: 302 VQLAHHVRQKVGEKFNVWLEPEVRFIG 328 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 55.3 bits (133), Expect = 2e-08 Identities = 68/388 (17%), Positives = 118/388 (30%), Gaps = 153/388 (39%) Query: 5 RISRLLRE--RGKQLRGKFQENFP--LKQITWFRTGGNAEVMFQPQDIHDLKYFLTLLPS 60 + L E R K F L + W N P D Y L+ Sbjct: 190 FSAETLSELIRTTLDAEKV---FTQGLNILEWLE---NPSN--TP----DKDYLLS---- 233 Query: 61 DIPIT--IVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKS----- 113 IPI+ ++G+ L V +L GF+ E+R++ + GA +G S Sbjct: 234 -IPISCPLIGVIQ--LAHYV----VTAKLL--GFTPGELRSY---LKGA--TGHSQGLVT 279 Query: 114 ---------------LANSALRHGIGGFHFFYG-----------IPGSIGGAAYMNAGAN 147 A+ FF G +P SI ++ N Sbjct: 280 AVAIAETDSWESFFVSVRKAIT-----VLFFIGVRCYEAYPNTSLPPSI----LEDSLEN 330 Query: 148 NCETSQYVVEVHGIDRKG--------NQHVIPREQLKYQYRSSEITKDLI--ITHVVLRG 197 N ++ + + ++ N H +P + ++ L+ ++V+ G Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGK--------QVEISLVNGAKNLVVSG 381 Query: 198 FPES--------QNIISAAIAN-----------VCHHRETVQPIKEKTGGSTFKNPTGHS 238 P+S + + + + +R P+ S F HS Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR--FLPV-----ASPF-----HS 429 Query: 239 -----AWQLIEKS-GCRGLEFGGA--KISELHCNFMINADNATGYDLEYLGEQVRKKVFN 290 A LI K + F +I ++ F G DL L + +++ + Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTF-------DGSDLRVLSGSISERIVD 481 Query: 291 QSGILLE---WEIKRLGDFFD--HQIVD 313 I+ WE F H I+D Sbjct: 482 C--IIRLPVKWE-TTTQ--FKATH-ILD 503 Score = 31.5 bits (71), Expect = 0.25 Identities = 52/284 (18%), Positives = 84/284 (29%), Gaps = 102/284 (35%) Query: 16 QLRGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKY-FLTLL-----PSDIP----IT 65 QL+ +F + P T G A +P +L FL + PS + + Sbjct: 32 QLQEQFNKILPE------PTEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84 Query: 66 IVGLG---SNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGA-----RCSGKSL--- 114 + L + L I + +L + + ++ + + Sbjct: 85 NLCLTEFENCYL-EGNDIHALAAKLLQENDTTLVKTKE---LIKNYITARIMAKRPFDKK 140 Query: 115 ANSAL-RHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPRE 173 +NSAL R G I G G N + Y E+ R+ Sbjct: 141 SNSALFRAVGEGNAQLVAIFG----------GQGNTDD--YFEEL-------------RD 175 Query: 174 QLKYQ-YRSSEITKDLIIT----------------HVVLRGF------------PESQNI 204 L YQ Y + DLI V +G P+ + Sbjct: 176 -L-YQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231 Query: 205 ISAAIA-------NVCHHRETVQPIKEKTGG---STFKNPTGHS 238 +S I+ + H+ T + + T G S K TGHS Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGATGHS 274 >2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Score = 36.5 bits (83), Expect = 0.007 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 10/157 (6%) Query: 61 DIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEV-RNHCEMIVGARCSGKSLANSAL 119 + I++ G N G+VL L ++I + +G L A Sbjct: 62 GLEISVRSGGHNPNGYATNDGGIVLDLRL--MNSIHIDTAGSRARIGGGVISGDLVKEAA 119 Query: 120 RHG---IGGFHFFYGIPGSIGGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQ-- 174 + G + G H G G S ++ + G+ ++ Sbjct: 120 KFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERP 179 Query: 175 -LKYQYRSSEITKDLIITHVVLRGFPESQNIISAAIA 210 L + R + ++T V ++ + + +++ I Sbjct: 180 ELFWAVRGAGPNFG-VVTEVEVQLYELPRKMLAGFIT 215 >1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Score = 31.1 bits (69), Expect = 0.37 Identities = 21/181 (11%), Positives = 46/181 (25%), Gaps = 30/181 (16%) Query: 61 DIPITIVGLGSNILVRDAGIR--GVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSA 118 + I+ G G + G ++L L + V ++ + A Sbjct: 66 GVQISAKGGGHSYGSYGFGGEDGHLMLELDR--MYRVSVDDNNVATIQGGARLGYTALEL 123 Query: 119 LRHGIGGFHFFYGIPGSIGGAAYMNAGANNC----ETSQYVVEVHGIDRKGNQHVIPREQ 174 L G +GG T +++ + + + Sbjct: 124 LDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVHV---- 179 Query: 175 LKYQYRSSEITKDL------------IITHVVLRGFPESQNIISAAIANVCHHRETVQPI 222 S DL I++ F + I + + + ++ V + Sbjct: 180 ------SETENADLFWALRXXXXXFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGL 233 Query: 223 K 223 K Sbjct: 234 K 234 >3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Score = 29.9 bits (66), Expect = 0.69 Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 8/112 (7%) Query: 61 DIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEV-RNHCEMIVGARCSGKSLANSAL 119 I + G + + + + + + V + + L + Sbjct: 69 SWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAIT 128 Query: 120 RHGIGGFHFFYGIPGSIGGAAYMNAGANN------CETSQYVVEVHGIDRKG 165 F G ++G +++ G + VV+ ID G Sbjct: 129 ESS-SKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179 >2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8} Length = 219 Score = 29.3 bits (65), Expect = 1.2 Identities = 16/109 (14%), Positives = 26/109 (23%), Gaps = 17/109 (15%) Query: 103 MIVGARCSGKSLANSALRHGIGGFHFFYGIP-----GSIGGAAYMNAGANNCETSQYVVE 157 ++ + G F P G +GG A V+ Sbjct: 10 LVAPGEADLLEVHARLAGTG-----LFPPFPPVELPGGVGGLVARGGFAQTFFFPAEVLG 64 Query: 158 VHGIDRKGNQHVIPREQLKYQYRSSEITKDL-------IITHVVLRGFP 199 + KG + +K + + VVLR P Sbjct: 65 LTFRTPKGRRVRAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRP 113 >3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Score = 28.6 bits (62), Expect = 1.7 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 12/141 (8%) Query: 21 FQENFPLKQITWFRTGGN----AEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILV 75 F PL + ++ G+ P+ ++ + + G+ N Sbjct: 8 FPAEIPLYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSP 67 Query: 76 RDAG-----IRGVVLRLS--NAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHF 128 V+L + S ++ A + ++L + G+G Sbjct: 68 LTLAAGVSCPAVVLLDTTRYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAA 127 Query: 129 FYGIPGSIGGAAYMNAGANNC 149 ++GG +N Sbjct: 128 PAPGDLTLGGVLAINGHGTAI 148 >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Score = 27.9 bits (61), Expect = 2.7 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN-HCEMIVGARCSGKSLANSALRHG 122 +I+G+G + A I+G + N N+ +RN E + + Sbjct: 134 TSIIGVGKD-----AKIKGGGFLIKNV--DNVIIRNIEFEAPLDYFPEWDPTDGTLGEWN 186 Query: 123 IGG 125 Sbjct: 187 SEY 189 >2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Score = 28.1 bits (61), Expect = 2.9 Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 10/102 (9%) Query: 61 DIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMI--------VGARCSGK 112 + + G G +I + G+V+ +S + V + Sbjct: 86 KLTVAARGNGHSINGQAMAEGGLVVDMST--TAENHFEVGYLSGGDATAFVDVSGGALWE 143 Query: 113 SLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANNCETSQY 154 + + + G G NAG + Sbjct: 144 DVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYG 185 >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} Length = 460 Score = 27.7 bits (61), Expect = 3.3 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 17/50 (34%) Query: 103 MIVGARCSGKS-----LANSALRHGIGGFHFFY----------GIPGSIG 137 +IVG +GK+ L + AL+ + Y +PG I Sbjct: 142 VIVGGSQTGKTSLSRTLCSYALKF--NAYQPLYINLDPQQPIFTVPGCIS 189 >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Score = 27.4 bits (60), Expect = 4.7 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 7/36 (19%) Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN 99 TI+G+GSN L + N+ +RN Sbjct: 82 TTIIGVGSN-----GKFTNGSLVIKGV--KNVILRN 110 >1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* Length = 534 Score = 27.3 bits (59), Expect = 4.7 Identities = 17/142 (11%), Positives = 34/142 (23%), Gaps = 18/142 (12%) Query: 40 EVMFQPQDIHD----LKYFLTLLPSDIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNI 95 + P D L + I G G +++ + GVV+ +++ + Sbjct: 70 AAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMAS--LGDA 127 Query: 96 EVRNHCE-------MIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAGANN 148 + G + ++L G +N Sbjct: 128 AAPPRINVSADGRYVDAGGEQVWIDVLRASLARG-----VAPRSWTDYLYLTVGGTLSNA 182 Query: 149 CETSQYVVEVHGIDRKGNQHVI 170 + Q I VI Sbjct: 183 GISGQAFRHGPQISNVLEMDVI 204 >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A Length = 399 Score = 27.1 bits (59), Expect = 6.0 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN 99 TIVG G+N V + ++ N NIE ++ Sbjct: 129 TTIVGSGTNAKVVGGNFQ---IKSDNVIIRNIEFQD 161 >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 Score = 26.8 bits (58), Expect = 6.2 Identities = 7/20 (35%), Positives = 10/20 (50%) Query: 104 IVGARCSGKSLANSALRHGI 123 IVGA +G L +H + Sbjct: 27 IVGAGTAGLHLGLFLRQHDV 46 >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639 Score = 26.6 bits (57), Expect = 7.0 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%) Query: 58 LPSDIPITIVGLG------SNILVRDAGIRGVVL 85 +PS + + IVG G + L IR ++ Sbjct: 29 VPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIV 62 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.423 Gapped Lambda K H 0.267 0.0374 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,849,249 Number of extensions: 132477 Number of successful extensions: 375 Number of sequences better than 10.0: 1 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 23 Length of query: 318 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 226 Effective length of database: 3,462,782 Effective search space: 782588732 Effective search space used: 782588732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.7 bits)