RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781095|ref|YP_003065508.1|
UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus Liberibacter
asiaticus str. psy62]
(318 letters)
>d1hska2 d.146.1.1 (A:209-317) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase,
MurB, C-terminal domain {Staphylococcus aureus [TaxId:
1280]}
Length = 109
Score = 112 bits (282), Expect = 3e-26
Identities = 38/102 (37%), Positives = 58/102 (56%)
Query: 205 ISAAIANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCN 264
I A + ++ RE+ QP++ + GS F+ P GH A +LI+ S +G GG ++S H
Sbjct: 6 IQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAG 65
Query: 265 FMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGDF 306
FM+N DN T D E L V+K V + GI L E++ +G+
Sbjct: 66 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIGEH 107
>d1hska1 d.145.1.2 (A:15-208) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Staphylococcus aureus [TaxId:
1280]}
Length = 194
Score = 104 bits (259), Expect = 1e-23
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 18 RGKFQENFPLKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVR 76
K + + PLK+ T+ +TGGNA+ P +++ + ++IP+T +G GSNI++R
Sbjct: 14 NEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR 73
Query: 77 DAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSI 136
+ GIRG+V+ L + + +I G+ + ++ A + + G F GIPGSI
Sbjct: 74 EGGIRGIVISLL---SLDHIEVSDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSI 130
Query: 137 GGAAYMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKD-LIITHVVL 195
GGA YMNAGA E + ++ +G+ + ++L+ YR+S I K+ L++
Sbjct: 131 GGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSIIQKEHLVVLEAAF 190
Query: 196 RGFP 199
P
Sbjct: 191 TLAP 194
>d1uxya2 d.146.1.1 (A:201-342) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase,
MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 142
Score = 90.8 bits (225), Expect = 1e-19
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 178 QYRSSEITKDLIITHVVLRGFPESQNIISAAIANVCHHRETVQPIKEKTGGSTFKNPTGH 237
R++++ + + G ++SA A + P + GS
Sbjct: 12 HMRTTKLPDPKVNGNA---GAFFKNPVVSAETAKALLSQFPTAPNYPQADGSVK-----L 63
Query: 238 SAWQLIEKSGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLE 297
+A LI++ +G++ GGA + +IN DNA D+ L VR+KV + + LE
Sbjct: 64 AAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLE 123
Query: 298 WEIKRLG 304
E++ +G
Sbjct: 124 PEVRFIG 130
>d1uxya1 d.145.1.2 (A:3-200) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 198
Score = 89.6 bits (221), Expect = 4e-19
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Query: 27 LKQITWFRTGGNAEVMFQPQDIHDLKYFLTLL-PSDIPITIVGLGSNILVRDAGIRGVVL 85
LK F NA+ + +D L P+ I+G GSN+L + RG V+
Sbjct: 3 LKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLE-DYRGTVI 61
Query: 86 RLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAAYMNAG 145
G + + + VGA + L L+ G+ G IPG +G + N G
Sbjct: 62 INRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIG 121
Query: 146 ANNCETSQYVVEVHGID-RKGNQHVIPREQLKYQYRSS----EITKDLIITHVVLRGFPE 200
A E + V ++ G Q + ++ ++ YR S E I V LR E
Sbjct: 122 AYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKE 181
Query: 201 SQNIIS-AAIANV 212
Q +++ + +
Sbjct: 182 WQPVLTYGDLTRL 194
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
cedar (Juniperus ashei) [TaxId: 13101]}
Length = 346
Score = 28.1 bits (62), Expect = 1.0
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 63 PITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHG 122
TI G G++ + L S++ + + I G S + G
Sbjct: 89 HKTIDGRGAD-----VHLGNGGPCLFMRKVSHVILHSL--HIHGCNTSVLGDVLVSESIG 141
Query: 123 IGGFHFFYGIPGSIGGA 139
+ H G ++
Sbjct: 142 VEPVHAQDGDAITMRNV 158
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId:
1423]}
Length = 399
Score = 27.4 bits (60), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN 99
TIVG G+N V + ++ N NIE ++
Sbjct: 129 TTIVGSGTNAKVVGGNFQ---IKSDNVIIRNIEFQD 161
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 288
Score = 27.0 bits (58), Expect = 2.2
Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 14/169 (8%)
Query: 104 IVGARCSGKSLANSALRHGIGGFHFF--YGIPGSIGGAAYMNAGANNCETSQYVVEVHGI 161
I GA G S A + + GIG +G + A + G+
Sbjct: 6 IAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAA------VEALAELGL 59
Query: 162 DRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLRGFPESQNIISAAIANVCHHRETVQP 221
IP +L+Y +S +P+ +I +
Sbjct: 60 GPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQY------SIHRGELQMILLAA 113
Query: 222 IKEKTGGSTFKNPTGHSAWQLIEKSGCRGLEFGGAKISELHCNFMINAD 270
++E+ G + G + + G G K L + ++ AD
Sbjct: 114 VRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGAD 162
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A
[TaxId: 556]}
Length = 361
Score = 26.3 bits (57), Expect = 4.0
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNH 100
T++GLG++ + + G +N+ +RN
Sbjct: 89 TTVIGLGTDAKFINGSLIIDGTD----GTNNVIIRNV 121
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 250
Score = 25.9 bits (56), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 63 PITIV--GLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNH 100
P++I G++ LVR G + L+ AG +E+R
Sbjct: 3 PVSISLSSYGAD-LVRSRGQASFLPLLAMAGAQRVELREE 41
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 26.2 bits (56), Expect = 4.3
Identities = 36/249 (14%), Positives = 64/249 (25%), Gaps = 21/249 (8%)
Query: 85 LRLSN----AGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSIGGAA 140
L L S I + IVG SGKS A++ G
Sbjct: 6 LYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFD-- 63
Query: 141 YMNAGANNCETSQYVVEVHGIDRKGNQHVIPREQLKYQYRSSEITKDLIITHVVLRGF-- 198
+ AG+ N + + G + + RE + + + + + F
Sbjct: 64 MIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAG 123
Query: 199 ----PESQNIISAAI---------ANVCHHRETVQPIKEKTGGSTFKNPTGHSAWQLIEK 245
+ +I+ + G N + + L+
Sbjct: 124 TGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFF 183
Query: 246 SGCRGLEFGGAKISELHCNFMINADNATGYDLEYLGEQVRKKVFNQSGILLEWEIKRLGD 305
G L S L F I+ D + +K +L +
Sbjct: 184 GGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSP 243
Query: 306 FFDHQIVDA 314
F+ VD+
Sbjct: 244 FYVLDEVDS 252
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 25.8 bits (57), Expect = 4.5
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 86 RLSNAGFSNIEVR---NHCEMIVGARCSGKSLANSALR 120
L+ G+S +EVR E+I+ A + L R
Sbjct: 19 ELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRR 56
>gi|93140497|sp|P0C1A2.1|PELA_ERWCH(40-393:393) RecName:
Full=Pectate lyase A; Flags: Precursor
gi|148449|gb|AAA24843.1| pectate lyase A, precursor (EC
4.2.2.2) gi|47168462|pdb|1OOC|A Chain A, Mutations In
The T1.5 Loop Of Pectate Lyase A
gi|47168463|pdb|1OOC|B Chain B, Mutations In The T1.5
Loop Of Pectate Lyase A gi|47168541|pdb|1PE9|A Chain
A, Mutations In The T1.5 Loop Of Pectate Lyase A
gi|47168542|pdb|1PE9|B Chain B, Mutations In The T1.5
Loop Of Pectate Lyase A gi|21730393|pdb|1JRG|A Chain
A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi gi|21730394|pdb|1JRG|B Chain B,
Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi gi|21730403|pdb|1JTA|A Chain A,
Crystal Structure Of Pectate Lyase A (C2 Form) E=1e-123
s/c=1.25 id=65% cov=97%
Length = 350
Score = 25.8 bits (56), Expect = 5.1
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN 99
T++GLG++ + + + +N+ +RN
Sbjct: 78 TTVIGLGTDAKFINGSLI--IDGTDGT--NNVIIRN 109
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
[TaxId: 5061]}
Length = 359
Score = 25.5 bits (55), Expect = 6.9
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN 99
+++G GS+ I+G LR+ + G NI ++N
Sbjct: 110 KSLIGEGSS-----GAIKGKGLRIVS-GAENIIIQN 139
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B
[TaxId: 5061]}
Length = 359
Score = 24.7 bits (53), Expect = 9.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 64 ITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRN 99
+IVG G+ I+G LR+ + G N+ ++N
Sbjct: 110 KSIVGQGTK-----GVIKGKGLRVVS-GAKNVIIQN 139
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 24.8 bits (53), Expect = 9.9
Identities = 15/77 (19%), Positives = 26/77 (33%)
Query: 77 DAGIRGVVLRLSNAGFSNIEVRNHCEMIVGARCSGKSLANSALRHGIGGFHFFYGIPGSI 136
DAG + L+L + G IEV ++ + G +L + + G
Sbjct: 20 DAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFR 79
Query: 137 GGAAYMNAGANNCETSQ 153
G A ++ S
Sbjct: 80 GEALSSLCALSDVTIST 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.423
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,239,203
Number of extensions: 58038
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 18
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)