HHsearch alignment for GI: 254781096 and conserved domain: CHL00194
>CHL00194 ycf39 Ycf39; Provisional.
Probab=95.54 E-value=0.2 Score=28.75 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=65.6
Q ss_pred EEEEEEECHHHHHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEEC--CCHHH----CCCCCEEEECCCCCCCC
Q ss_conf 07999461460878--999999879869996078998899999889889967--99788----68898999888989999
Q gi|254781096|r 9 PIHFVGIGGIGMSG--IAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIG--HKVEN----IDNAEILVLSTAIDKDN 80 (474)
Q Consensus 9 ~i~~iGigG~G~s~--lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g--~~~~~----i~~~d~vV~spgi~~~~ 80 (474)
T Consensus 2 ~ILV~--GATG~lGr~vVr~Ll~~G~~Vr~lvRnp-~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~~~~ 78 (319)
T CHL00194 2 SLLVI--GATGTLGRQIVRRALDEGYQVKCLVRNL-RKAAFLKEWGAELVYGDLSLPETIPPALEGITAIIDASTSRPSD 78 (319)
T ss_pred EEEEE--CCCCHHHHHHHHHHHHCCCCEEEEECCH-HHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 79998--9985899999999996889089995786-76323421596799942788778999965996799945667788
Q ss_pred -------------HHHHHHHHCCCCEEEHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf -------------88999997799499538998864116-851587045784047788886403444430575
Q gi|254781096|r 81 -------------VECIAARERNIPIIFRSEMLAGLMRC-RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVI 139 (474)
Q Consensus 81 -------------~~l~~a~~~gi~i~~~~e~l~~~~~~-~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~ 139 (474)
T Consensus 79 ~~~~~~vd~~g~~~li~AAk~aGVkr~V~---lS~lga~~~~~~p------~~~~K~~~E~~L~~Sgl~~TIl 142 (319)
T CHL00194 79 LNNAYQIDLEGKLALIEAAKAAKVKRFIF---FSILNAEQYPQVP------LMKIKSDIEEKLKQSGINYTIF 142 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCCCCCH------HHHHHHHHHHHHHHCCCCEEEE
T ss_conf 62088988988999999999849988999---6135666688756------7787999999998679985998