HHsearch alignment for GI: 254781096 and conserved domain: COG0769
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=343.47 Aligned_cols=329 Identities=28% Similarity=0.359 Sum_probs=245.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCC--CC--------C-----------CCCCCCCCCHHHCC
Q ss_conf 685158704578404778888640344443057535733333--10--------0-----------14685420011023
Q gi|254781096|r 106 CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSY--GT--------N-----------ARIGTSEWIVVEAD 164 (474)
Q Consensus 106 ~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~--~~--------~-----------~~~~~~~~~V~E~~ 164 (474)
T Consensus 90 ~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~-gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 90 KLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALI-GTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8518986387857999999999988629825899-977663268863456678921789999999999738809998850
Q ss_pred CC---CCHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCCCCC
Q ss_conf 22---1012211855303422202201100025566664301333333222222234650134543200111--233333
Q gi|254781096|r 165 ES---DGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNR--KIITYG 239 (474)
Q Consensus 165 e~---~~s~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~--~v~~fg 239 (474)
T Consensus 169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T COG0769 169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG 248 (475)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 34797578656359886456656666523574999998898776405788747987788038889999985688789968
Q ss_pred CCCCCCEEEE-EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCC
Q ss_conf 3322220221-021125842013555113444442000023567654333221121001232100000013343100001
Q gi|254781096|r 240 RHPQADIRYS-NIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGI 318 (474)
Q Consensus 240 ~~~~~d~~~~-~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~ 318 (474)
T Consensus 249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~-------~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v 321 (475)
T COG0769 249 CDFKRPDLDYRGIEESSSGSDFVFEPSGG-------IGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETLKPV 321 (475)
T ss_pred CCCCCCCHHHCCCEEEECCCEEEEECCCC-------CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 89963121222611421354058863787-------32686041227789999999999987499999999999746899
Q ss_pred CCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCCC-HHHH-HHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 58221101478604763024455430222333101344321033303663-1478-889999999861899999086667
Q gi|254781096|r 319 KRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKIIAIHQPHRY-SRLS-TLFDQFSSCFGDADIVLISPVYSA 396 (474)
Q Consensus 319 ~~R~e~v~~~~gv~~idDyahnP~~i~atl~al~~~~~~rii~i~~p~~~-sr~~-~~~~e~~~~l~~ad~vil~~i~~~ 396 (474)
T Consensus 322 ~GRmE~v~~~-~~~v~VDyAHnPd~le~~L~~~~~~~~g~li~VfG~gGDrD~~kr~~mg~i--a~~~ad~vivt~dnpR 398 (475)
T COG0769 322 PGRMELVNIG-GKLVIVDYAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAI--AEQLADIVIVTSDNPR 398 (475)
T ss_pred CCCEEEECCC-CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHH--HHHCCCCEEECCCCCC
T ss_conf 9860687389-976999953486999999999875349848999776688753430315999--9855993699189988
Q ss_pred CCCCCCCCCHHHHHHHHHHCCC-C-CEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 7643238999999999996389-9-89998898999999998558987999944899
Q gi|254781096|r 397 GEKEIPGFSSPELVKNIKLQGH-P-QAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451 (474)
Q Consensus 397 ~e~~~~g~~~~~l~~~i~~~~~-~-~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG~ 451 (474)
T Consensus 399 ~edp------~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGh 449 (475)
T COG0769 399 SEDP------AVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGH 449 (475)
T ss_pred CCCH------HHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 7688------99999998364766414301109999999998632488789964235