HHsearch alignment for GI: 254781096 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=548.19 Aligned_cols=428 Identities=21% Similarity=0.295 Sum_probs=319.8
Q ss_pred CHHHCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHH-HHHHHCCCEEEECCCHHHCCCCCEEEECCCCCCCCH
Q ss_conf 5312760799946146087899999987986999607899889-999988988996799788688989998889899998
Q gi|254781096|r 3 NPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNV-QRLHKQGIKVSIGHKVENIDNAEILVLSTAIDKDNV 81 (474)
Q Consensus 3 ~~~~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~-~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi~~~~~ 81 (474)
T Consensus 2 ~~~~~K~v~V~GlG~sG~a-~~~~L~~~~~~~~~dd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~d~iV~SPGI~~~~p 78 (450)
T PRK01368 2 NSHTKQKIGVFGLGKTGIS-VYEELQNKYDLIVYDDLKANRDIFEELFSKN-AI-IALSDSRWQNLDKIVLSPGIPLTHE 78 (450)
T ss_pred CCCCCCEEEEEEECHHHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHCCC-CE-ECCCCCCHHCCCEEEECCCCCCCCH
T ss_conf 7668990899958787999-9999971999899989965647899752148-36-0257111521999998996199899
Q ss_pred HHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 89999977994995389988641168515870457840477888864034444305753573333310014685420011
Q gi|254781096|r 82 ECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVV 161 (474)
Q Consensus 82 ~l~~a~~~gi~i~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~~~V~ 161 (474)
T Consensus 79 ~~~~a~~~~i~i~~eiel~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~-~~~GNIG~p~l-~~-~~~~d~~Vl 155 (450)
T PRK01368 79 IVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDY-PVAGNIGVPAL-QA-KASKDGYVL 155 (450)
T ss_pred HHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEECCCCHHHH-HC-CCCCCEEEE
T ss_conf 9999998799587699999976679977999689997489999999999759962-89625563665-25-268975999
Q ss_pred HCCCCCCHH-HHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC---CCCCC
Q ss_conf 023221012-21185530342220220110002556666430133333322222223465013454320011---12333
Q gi|254781096|r 162 EADESDGTF-IRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQN---RKIIT 237 (474)
Q Consensus 162 E~~e~~~s~-~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~---~~v~~ 237 (474)
T Consensus 156 ElSSfQl~~~~~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~ 235 (450)
T PRK01368 156 ELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIP 235 (450)
T ss_pred EECCCCHHCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 93565220363479878999468877987726878999999999965898888999787488999998630045516974
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCC
Q ss_conf 33332222022102112584201355511344444200002356765433322112100123210000001334310000
Q gi|254781096|r 238 YGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSG 317 (474)
Q Consensus 238 fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g 317 (474)
T Consensus 236 f~~~~~~~~g---~~~~~~~~~~~~------~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~g 306 (450)
T PRK01368 236 FSVTKILENG---ISVVDDKILDNF------FDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQS 306 (450)
T ss_pred ECCCCCCCCC---EEEECCEEEEEC------CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 0345324477---488547335520------1553300452113575658999999999999809977777876424677
Q ss_pred CCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 1582211014786047630-244554302223331013443210333036631478889999999861899999086667
Q gi|254781096|r 318 IKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSA 396 (474)
Q Consensus 318 ~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad~vil~~i~~~ 396 (474)
T Consensus 307 lpHRlE~V~~~~gv~~iNDSKaTN~---~a~~~Al~~~~--~i~lI~G--G~~K~~d-~~~l~~~~~~v~~~~l------ 372 (450)
T PRK01368 307 LPHRMQYIGSINNISFYNDSKATNA---ISAVQSIKALD--NIYWLAG--GIPKEGG-IEEIKPYFSKIKKAYF------ 372 (450)
T ss_pred HHHEEEEEEEECCEEEECCCCCCCH---HHHHHHHHCCC--CEEEEEE--CCCCCCC-HHHHHHHHHCCCEEEE------
T ss_conf 0014689999899999717887899---99999985689--7399994--1577788-7999988743879999------
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCE----EEEECCC--------CHHHHHHHHHHHHH
Q ss_conf 76432389999999999963899899988989999999985589879----9994489--------98899999999987
Q gi|254781096|r 397 GEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDF----IIFFGAG--------NITQWAASLIGELE 464 (474)
Q Consensus 397 ~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDv----VL~~GaG--------~~~~~~~~~~~~l~ 464 (474)
T Consensus 373 -----~G~~~~~~~~~~~--~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLl-SPacaSfD~f~nye~RG~~F~~lv~ 444 (450)
T PRK01368 373 -----YGQAKEMFANTAK--NIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILL-APSCSSYDQFKNFEERGELFIKLSS 444 (450)
T ss_pred -----ECCCHHHHHHHCC--CCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -----8978999998605--8987696499999999999997557878997996-8602040131799999999999999
Q ss_pred HCC
Q ss_conf 417
Q gi|254781096|r 465 LVT 467 (474)
Q Consensus 465 ~~~ 467 (474)
T Consensus 445 ~L~ 447 (450)
T PRK01368 445 ILI 447 (450)
T ss_pred HHH
T ss_conf 987