HHsearch alignment for GI: 254781096 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=561.24 Aligned_cols=429 Identities=21% Similarity=0.291 Sum_probs=313.6
Q ss_pred CCCHHHCC--EEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCHHHCCCCCEEEECCCCCC
Q ss_conf 98531276--0799946146087899999987986999607899889999988988996799788688989998889899
Q gi|254781096|r 1 MLNPQGMG--PIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAIDK 78 (474)
Q Consensus 1 ~~~~~~~~--~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi~~ 78 (474)
T Consensus 1 m~~~~~~~gk~v~v~GlG~sG~s~-a~~L~~~G~~V~~~D~~~~-~~~~~~~~g~~~~-~~~~~~~~~~~~iV~SPGIp~ 77 (457)
T PRK01390 1 MIPVTSFKGKTVALFGLGGSGLAT-ARALKAGGAEVIAWDDNPD-SVAKAAAAGIATA-DLRTADWSQFAALVLSPGVPL 77 (457)
T ss_pred CCCCCCCCCCEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCH-HHHHHHHCCCCCC-CCCCCCCCCCCEEEECCCCCC
T ss_conf 957320289989999436999999-9999978997999939920-6689987598314-554123203878999998886
Q ss_pred CCH----HHHHHHHCCCCEEEHHHHHHH----HHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 998----899999779949953899886----411685158704578404778888640344443057535733333100
Q gi|254781096|r 79 DNV----ECIAARERNIPIIFRSEMLAG----LMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTN 150 (474)
Q Consensus 79 ~~~----~l~~a~~~gi~i~~~~e~l~~----~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~ 150 (474)
T Consensus 78 ~~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~-~~gGNIG~p~l~l 156 (457)
T PRK01390 78 THPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDV-QMGGNIGTAILSL 156 (457)
T ss_pred CCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE-EEECCCCHHHCCC
T ss_conf 566731999999985991860089999998732578988999289964989999999999739986-9966624011123
Q ss_pred CCCCCCCCCHHHCCCCCCHHH-HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 146854200110232210122-1185530342220220110002556666430133333322222223465013454320
Q gi|254781096|r 151 ARIGTSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIAR 229 (474)
Q Consensus 151 ~~~~~~~~~V~E~~e~~~s~~-~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~ 229 (474)
T Consensus 157 ~~~~~~~~~VlElSSfQl~~~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~---~~~~Vin~DD~~~~~l~~~ 233 (457)
T PRK01390 157 EPPKAGRVYVVECSSYQIDLTPSLDPTVGILLNLTPDHLDRHGTMEHYAAIKERLVAG---AGTAVIGVDDAYCQAIADR 233 (457)
T ss_pred CCCCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHH
T ss_conf 4688996699992575265440069988999178877865508999999999998557---9869996888889999999
Q ss_pred CC--CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf 01--1123333333222202210211258420135551134444420000235676543332211210012321000000
Q gi|254781096|r 230 IQ--NRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSED 307 (474)
Q Consensus 230 ~~--~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~ 307 (474)
T Consensus 234 ~~~~~~~~~~~s~~~~~~---~g~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~L~G~HN~~NalAAia~a~~lGi~~e~ 306 (457)
T PRK01390 234 LERAGKRVVRISVEKPLA---RGIYADGG-KLVRA--TGGARHEIADLAG-IGSLRGRHNAQNAAAAVAACLALGVSPEE 306 (457)
T ss_pred HHHCCCEEEEEECCCCCC---CCEEEECC-EEEEC--CCCCEEEEEEHHH-CCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 876388499971676566---86498578-89984--7983454431432-34577542699999999999981898999
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 13343100001582211014786047630-24455430222333101344321033303663147888999999986189
Q gi|254781096|r 308 VKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGDAD 386 (474)
Q Consensus 308 i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad 386 (474)
T Consensus 307 i~~aL~~F~Gl~hR~E~V~~~~Gv~~iNDSKaTN~~---at~~Al~s~~--~i~lI~G--G~~K~~d~-~~l~~~~~~v~ 378 (457)
T PRK01390 307 IQAGLRSFPGLAHRMEQVGRRGKVLFVNDSKATNAD---AAAPALSSFP--NIYWIAG--GKPKAGGI-ESLAPFFPRIA 378 (457)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCEEECCCCCCCHH---HHHHHHHCCC--CEEEEEC--CCCCCCCH-HHHHHHHHCCC
T ss_conf 999997489999852797542783385377678989---9999997378--8599945--04788897-99999874335
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC----CCCCEEEEECCC-------CHHHH
Q ss_conf 9999086667764323899999999999638998999889899999999855----898799994489-------98899
Q gi|254781096|r 387 IVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIA----EPGDFIIFFGAG-------NITQW 455 (474)
Q Consensus 387 ~vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~----~~gDvVL~~GaG-------~~~~~ 455 (474)
T Consensus 379 ~~~l-----------iG~~~~~~~~~l~~--~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeR 445 (457)
T PRK01390 379 KAYL-----------IGEAAEEFAATLGG--AVPYEISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVR 445 (457)
T ss_pred EEEE-----------ECCCHHHHHHHHHC--CCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHH
T ss_conf 9999-----------89888999998736--7987985989999999999998518999989979624040142699999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q gi|254781096|r 456 AASLIGELE 464 (474)
Q Consensus 456 ~~~~~~~l~ 464 (474)
T Consensus 446 G~~Fk~~V~ 454 (457)
T PRK01390 446 GDAFRELVQ 454 (457)
T ss_pred HHHHHHHHH
T ss_conf 999999998