HHsearch alignment for GI: 254781096 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=561.24  Aligned_cols=429  Identities=21%  Similarity=0.291  Sum_probs=313.6

Q ss_pred             CCCHHHCC--EEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCHHHCCCCCEEEECCCCCC
Q ss_conf             98531276--0799946146087899999987986999607899889999988988996799788688989998889899
Q gi|254781096|r    1 MLNPQGMG--PIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAIDK   78 (474)
Q Consensus         1 ~~~~~~~~--~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi~~   78 (474)
T Consensus         1 m~~~~~~~gk~v~v~GlG~sG~s~-a~~L~~~G~~V~~~D~~~~-~~~~~~~~g~~~~-~~~~~~~~~~~~iV~SPGIp~   77 (457)
T PRK01390          1 MIPVTSFKGKTVALFGLGGSGLAT-ARALKAGGAEVIAWDDNPD-SVAKAAAAGIATA-DLRTADWSQFAALVLSPGVPL   77 (457)
T ss_pred             CCCCCCCCCCEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCH-HHHHHHHCCCCCC-CCCCCCCCCCCEEEECCCCCC
T ss_conf             957320289989999436999999-9999978997999939920-6689987598314-554123203878999998886


Q ss_pred             CCH----HHHHHHHCCCCEEEHHHHHHH----HHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf             998----899999779949953899886----411685158704578404778888640344443057535733333100
Q gi|254781096|r   79 DNV----ECIAARERNIPIIFRSEMLAG----LMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTN  150 (474)
Q Consensus        79 ~~~----~l~~a~~~gi~i~~~~e~l~~----~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~  150 (474)
T Consensus        78 ~~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~-~~gGNIG~p~l~l  156 (457)
T PRK01390         78 THPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDV-QMGGNIGTAILSL  156 (457)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE-EEECCCCHHHCCC
T ss_conf             566731999999985991860089999998732578988999289964989999999999739986-9966624011123


Q ss_pred             CCCCCCCCCHHHCCCCCCHHH-HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             146854200110232210122-1185530342220220110002556666430133333322222223465013454320
Q gi|254781096|r  151 ARIGTSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIAR  229 (474)
Q Consensus       151 ~~~~~~~~~V~E~~e~~~s~~-~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~  229 (474)
T Consensus       157 ~~~~~~~~~VlElSSfQl~~~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~---~~~~Vin~DD~~~~~l~~~  233 (457)
T PRK01390        157 EPPKAGRVYVVECSSYQIDLTPSLDPTVGILLNLTPDHLDRHGTMEHYAAIKERLVAG---AGTAVIGVDDAYCQAIADR  233 (457)
T ss_pred             CCCCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHH
T ss_conf             4688996699992575265440069988999178877865508999999999998557---9869996888889999999


Q ss_pred             CC--CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf             01--1123333333222202210211258420135551134444420000235676543332211210012321000000
Q gi|254781096|r  230 IQ--NRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSED  307 (474)
Q Consensus       230 ~~--~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~  307 (474)
T Consensus       234 ~~~~~~~~~~~s~~~~~~---~g~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~L~G~HN~~NalAAia~a~~lGi~~e~  306 (457)
T PRK01390        234 LERAGKRVVRISVEKPLA---RGIYADGG-KLVRA--TGGARHEIADLAG-IGSLRGRHNAQNAAAAVAACLALGVSPEE  306 (457)
T ss_pred             HHHCCCEEEEEECCCCCC---CCEEEECC-EEEEC--CCCCEEEEEEHHH-CCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             876388499971676566---86498578-89984--7983454431432-34577542699999999999981898999


Q ss_pred             HHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             13343100001582211014786047630-24455430222333101344321033303663147888999999986189
Q gi|254781096|r  308 VKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGDAD  386 (474)
Q Consensus       308 i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad  386 (474)
T Consensus       307 i~~aL~~F~Gl~hR~E~V~~~~Gv~~iNDSKaTN~~---at~~Al~s~~--~i~lI~G--G~~K~~d~-~~l~~~~~~v~  378 (457)
T PRK01390        307 IQAGLRSFPGLAHRMEQVGRRGKVLFVNDSKATNAD---AAAPALSSFP--NIYWIAG--GKPKAGGI-ESLAPFFPRIA  378 (457)
T ss_pred             HHHHHHHCCCCCCCEEEEEECCCCEEECCCCCCCHH---HHHHHHHCCC--CEEEEEC--CCCCCCCH-HHHHHHHHCCC
T ss_conf             999997489999852797542783385377678989---9999997378--8599945--04788897-99999874335


Q ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC----CCCCEEEEECCC-------CHHHH
Q ss_conf             9999086667764323899999999999638998999889899999999855----898799994489-------98899
Q gi|254781096|r  387 IVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIA----EPGDFIIFFGAG-------NITQW  455 (474)
Q Consensus       387 ~vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~----~~gDvVL~~GaG-------~~~~~  455 (474)
T Consensus       379 ~~~l-----------iG~~~~~~~~~l~~--~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeR  445 (457)
T PRK01390        379 KAYL-----------IGEAAEEFAATLGG--AVPYEISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVR  445 (457)
T ss_pred             EEEE-----------ECCCHHHHHHHHHC--CCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHH
T ss_conf             9999-----------89888999998736--7987985989999999999998518999989979624040142699999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999987
Q gi|254781096|r  456 AASLIGELE  464 (474)
Q Consensus       456 ~~~~~~~l~  464 (474)
T Consensus       446 G~~Fk~~V~  454 (457)
T PRK01390        446 GDAFRELVQ  454 (457)
T ss_pred             HHHHHHHHH
T ss_conf             999999998