HHsearch alignment for GI: 254781096 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=567.28 Aligned_cols=441 Identities=22% Similarity=0.311 Sum_probs=328.4
Q ss_pred CCCHHHCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHCCCEEE--EC-CCHHHCCCCCEEEECCCC
Q ss_conf 985312760799946146087899999987986999607899-88999998898899--67-997886889899988898
Q gi|254781096|r 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILG-PNVQRLHKQGIKVS--IG-HKVENIDNAEILVLSTAI 76 (474)
Q Consensus 1 ~~~~~~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~-~~~~~L~~~gi~i~--~g-~~~~~i~~~d~vV~spgi 76 (474)
T Consensus 1 ~~~~~~~k~vlV~GlG~sG~a-~a~~L~~~G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI 79 (501)
T PRK02006 1 MFGDRQRPMVLVLGLGESGLA-MARWCARHGCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGL 79 (501)
T ss_pred CCCCCCCCEEEEEEECHHHHH-HHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEE
T ss_conf 976668983999833688999-9999997898499998999986199998608981897788986784689999989900
Q ss_pred CCC----CHHHHHHHHCCCCEEEHHHHHHHHHCC--------CCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 999----988999997799499538998864116--------85158704578404778888640344443057535733
Q gi|254781096|r 77 DKD----NVECIAARERNIPIIFRSEMLAGLMRC--------RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGII 144 (474)
Q Consensus 77 ~~~----~~~l~~a~~~gi~i~~~~e~l~~~~~~--------~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~ 144 (474)
T Consensus 80 ~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~-~~~GNIG 158 (501)
T PRK02006 80 SPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKV-AVAGNIS 158 (501)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE-EEECCCC
T ss_conf 888854319999999879958768999998876302223568748999389966879999999999769974-6525646
Q ss_pred CCCCCC--CCC---CCCCCCHHHCCCCCCH-HHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 333100--146---8542001102322101-2211855303422202201100025566664301333333222222234
Q gi|254781096|r 145 NSYGTN--ARI---GTSEWIVVEADESDGT-FIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCM 218 (474)
Q Consensus 145 ~~~~~~--~~~---~~~~~~V~E~~e~~~s-~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~ 218 (474)
T Consensus 159 ~p~l~~l~~~~~~~~~~d~~VlElSSfQLe~~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~rif~---~~~~~V~n~ 235 (501)
T PRK02006 159 PAALDKLAEAIDAAALPDVWVLELSSFQLETTHTFAPDAATVLNITQDHLDWHGSMAAYAAAKGRIFG---PATVRVLNR 235 (501)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHC---CCCEEEEEC
T ss_conf 10267787642257768689999664675756557967899907886564442379999999998723---485599948
Q ss_pred CCCHHHHHHHHCCC-CCCCCCCCCCCC---CEEEEEEEECCCCCEEEEEE--------------ECCC-----CCCCCCC
Q ss_conf 65013454320011-123333333222---20221021125842013555--------------1134-----4444200
Q gi|254781096|r 219 DHPEVRSLIARIQN-RKIITYGRHPQA---DIRYSNIRKYSGRSIFDVSV--------------QGNV-----TKDLTVI 275 (474)
Q Consensus 219 Dd~~~~~~~~~~~~-~~v~~fg~~~~~---d~~~~~i~~~~~~~~f~~~~--------------~~~~-----~~~~~~~ 275 (474)
T Consensus 236 DD~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (501)
T PRK02006 236 DDALVMAMAPPAAAADAPVTFGLDEPAQDGDYGLL---RENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLM 312 (501)
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEE---ECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCC
T ss_conf 88889987665056641688505775666540256---237705787303221000000122102333444331011035
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCC
Q ss_conf 0023567654333221121001232100000013343100001582211014786047630-244554302223331013
Q gi|254781096|r 276 KDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQI 354 (474)
Q Consensus 276 ~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~ 354 (474)
T Consensus 313 ~~~~L~l~G~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V~~~~gv~~iNDSKaTN~---~at~~Al~s~ 389 (501)
T PRK02006 313 PADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVIATIDDVDYVDDSKGTNV---GATVAALDGL 389 (501)
T ss_pred CCHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCCCH---HHHHHHHHHC
T ss_conf 5201035672069999999999998599878987663155787652589999678899737877898---9999999707
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHH
Q ss_conf 443210333036631478889999999861-8999990866677643238999999999996389989998898999999
Q gi|254781096|r 355 CPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSK 433 (474)
Q Consensus 355 ~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~ 433 (474)
T Consensus 390 -~~~iilI~GG--~~K~~d~-~~L~~~~~~~~k~vil-----------~G~~~~~i~~~l~~~~-~~~~~~~~l~~Av~~ 453 (501)
T PRK02006 390 -AQRVVLIAGG--DGKGQDF-SPLAAPVARWARAVVL-----------IGRDAPAIRAALADTG-VPLVDAATLEEAVRA 453 (501)
T ss_pred -CCCEEEEEEC--CCCCCCH-HHHHHHHHHHCEEEEE-----------ECCCHHHHHHHHHCCC-CEEEECCCHHHHHHH
T ss_conf -8974999805--7777797-9999999853709999-----------8989999999975179-807985999999999
Q ss_pred HHHHCCCCCEEEEECCC--------CHHHHHHHHHHHHHHCCCC
Q ss_conf 99855898799994489--------9889999999998741713
Q gi|254781096|r 434 ILAIAEPGDFIIFFGAG--------NITQWAASLIGELELVTPQ 469 (474)
Q Consensus 434 ~~~~~~~gDvVL~~GaG--------~~~~~~~~~~~~l~~~~~~ 469 (474)
T Consensus 454 a~~~a~~gd~VLl-SPacaSfD~F~nyeeRG~~F~~~V~~L~~~ 496 (501)
T PRK02006 454 AAELAQPGDAVLL-SPACASLDMFRNYAHRAQVFRAAVEELALD 496 (501)
T ss_pred HHHHCCCCCEEEE-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9975789798998-961103012069999999999999999985