HHsearch alignment for GI: 254781096 and conserved domain: PRK02006

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=567.28  Aligned_cols=441  Identities=22%  Similarity=0.311  Sum_probs=328.4

Q ss_pred             CCCHHHCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHCCCEEE--EC-CCHHHCCCCCEEEECCCC
Q ss_conf             985312760799946146087899999987986999607899-88999998898899--67-997886889899988898
Q gi|254781096|r    1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILG-PNVQRLHKQGIKVS--IG-HKVENIDNAEILVLSTAI   76 (474)
Q Consensus         1 ~~~~~~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~-~~~~~L~~~gi~i~--~g-~~~~~i~~~d~vV~spgi   76 (474)
T Consensus         1 ~~~~~~~k~vlV~GlG~sG~a-~a~~L~~~G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI   79 (501)
T PRK02006          1 MFGDRQRPMVLVLGLGESGLA-MARWCARHGCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGL   79 (501)
T ss_pred             CCCCCCCCEEEEEEECHHHHH-HHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEE
T ss_conf             976668983999833688999-9999997898499998999986199998608981897788986784689999989900


Q ss_pred             CCC----CHHHHHHHHCCCCEEEHHHHHHHHHCC--------CCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             999----988999997799499538998864116--------85158704578404778888640344443057535733
Q gi|254781096|r   77 DKD----NVECIAARERNIPIIFRSEMLAGLMRC--------RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGII  144 (474)
Q Consensus        77 ~~~----~~~l~~a~~~gi~i~~~~e~l~~~~~~--------~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~  144 (474)
T Consensus        80 ~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~-~~~GNIG  158 (501)
T PRK02006         80 SPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKV-AVAGNIS  158 (501)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE-EEECCCC
T ss_conf             888854319999999879958768999998876302223568748999389966879999999999769974-6525646


Q ss_pred             CCCCCC--CCC---CCCCCCHHHCCCCCCH-HHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             333100--146---8542001102322101-2211855303422202201100025566664301333333222222234
Q gi|254781096|r  145 NSYGTN--ARI---GTSEWIVVEADESDGT-FIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCM  218 (474)
Q Consensus       145 ~~~~~~--~~~---~~~~~~V~E~~e~~~s-~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~  218 (474)
T Consensus       159 ~p~l~~l~~~~~~~~~~d~~VlElSSfQLe~~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~rif~---~~~~~V~n~  235 (501)
T PRK02006        159 PAALDKLAEAIDAAALPDVWVLELSSFQLETTHTFAPDAATVLNITQDHLDWHGSMAAYAAAKGRIFG---PATVRVLNR  235 (501)
T ss_pred             CHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHC---CCCEEEEEC
T ss_conf             10267787642257768689999664675756557967899907886564442379999999998723---485599948


Q ss_pred             CCCHHHHHHHHCCC-CCCCCCCCCCCC---CEEEEEEEECCCCCEEEEEE--------------ECCC-----CCCCCCC
Q ss_conf             65013454320011-123333333222---20221021125842013555--------------1134-----4444200
Q gi|254781096|r  219 DHPEVRSLIARIQN-RKIITYGRHPQA---DIRYSNIRKYSGRSIFDVSV--------------QGNV-----TKDLTVI  275 (474)
Q Consensus       219 Dd~~~~~~~~~~~~-~~v~~fg~~~~~---d~~~~~i~~~~~~~~f~~~~--------------~~~~-----~~~~~~~  275 (474)
T Consensus       236 DD~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (501)
T PRK02006        236 DDALVMAMAPPAAAADAPVTFGLDEPAQDGDYGLL---RENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLM  312 (501)
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEE---ECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCC
T ss_conf             88889987665056641688505775666540256---237705787303221000000122102333444331011035


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCC
Q ss_conf             0023567654333221121001232100000013343100001582211014786047630-244554302223331013
Q gi|254781096|r  276 KDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQI  354 (474)
Q Consensus       276 ~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~  354 (474)
T Consensus       313 ~~~~L~l~G~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V~~~~gv~~iNDSKaTN~---~at~~Al~s~  389 (501)
T PRK02006        313 PADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVIATIDDVDYVDDSKGTNV---GATVAALDGL  389 (501)
T ss_pred             CCHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCCCH---HHHHHHHHHC
T ss_conf             5201035672069999999999998599878987663155787652589999678899737877898---9999999707


Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHH
Q ss_conf             443210333036631478889999999861-8999990866677643238999999999996389989998898999999
Q gi|254781096|r  355 CPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSK  433 (474)
Q Consensus       355 ~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~  433 (474)
T Consensus       390 -~~~iilI~GG--~~K~~d~-~~L~~~~~~~~k~vil-----------~G~~~~~i~~~l~~~~-~~~~~~~~l~~Av~~  453 (501)
T PRK02006        390 -AQRVVLIAGG--DGKGQDF-SPLAAPVARWARAVVL-----------IGRDAPAIRAALADTG-VPLVDAATLEEAVRA  453 (501)
T ss_pred             -CCCEEEEEEC--CCCCCCH-HHHHHHHHHHCEEEEE-----------ECCCHHHHHHHHHCCC-CEEEECCCHHHHHHH
T ss_conf             -8974999805--7777797-9999999853709999-----------8989999999975179-807985999999999


Q ss_pred             HHHHCCCCCEEEEECCC--------CHHHHHHHHHHHHHHCCCC
Q ss_conf             99855898799994489--------9889999999998741713
Q gi|254781096|r  434 ILAIAEPGDFIIFFGAG--------NITQWAASLIGELELVTPQ  469 (474)
Q Consensus       434 ~~~~~~~gDvVL~~GaG--------~~~~~~~~~~~~l~~~~~~  469 (474)
T Consensus       454 a~~~a~~gd~VLl-SPacaSfD~F~nyeeRG~~F~~~V~~L~~~  496 (501)
T PRK02006        454 AAELAQPGDAVLL-SPACASLDMFRNYAHRAQVFRAAVEELALD  496 (501)
T ss_pred             HHHHCCCCCEEEE-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9975789798998-961103012069999999999999999985