HHsearch alignment for GI: 254781096 and conserved domain: PRK03369

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=556.02  Aligned_cols=427  Identities=21%  Similarity=0.268  Sum_probs=309.8

Q ss_pred             CCCHH-HCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEE-CCCHHHCCCCCEEEECCCCCC
Q ss_conf             98531-2760799946146087899999987986999607899889999988988996-799788688989998889899
Q gi|254781096|r    1 MLNPQ-GMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSI-GHKVENIDNAEILVLSTAIDK   78 (474)
Q Consensus         1 ~~~~~-~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~-g~~~~~i~~~d~vV~spgi~~   78 (474)
T Consensus         5 ~~~~~~~Gk~V~V~GlG~sG~a-~a~~L~~~G~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~   82 (487)
T PRK03369          5 MLDPLTPGAPVLVAGAGVTGRA-VLAALTRFGARPTVCDDDPD-ALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPP   82 (487)
T ss_pred             CCCCCCCCCEEEEEEECHHHHH-HHHHHHHCCCEEEEEECCCH-HHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCC
T ss_conf             4786579898999915683899-99999978697999989825-779998659948637622656467788998995799


Q ss_pred             CCHHHHHHHHCCCCEEEHHHHHHHHHC------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             998899999779949953899886411------68515870457840477888864034444305753573333310014
Q gi|254781096|r   79 DNVECIAARERNIPIIFRSEMLAGLMR------CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR  152 (474)
Q Consensus        79 ~~~~l~~a~~~gi~i~~~~e~l~~~~~------~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~  152 (474)
T Consensus        83 ~~p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~-~~~~GNiG~p~~-~~~  160 (487)
T PRK03369         83 TAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRR-SVLCGNIGSPVL-DVL  160 (487)
T ss_pred             CCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC-EEEEECCCHHHH-HHC
T ss_conf             899999999889907659999999874443367665599979887278999999999858998-599813665766-412


Q ss_pred             CCCCCCCHHHCCCCCCHHH-HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             6854200110232210122-118553034222022011000255666643013333332222222346501345432001
Q gi|254781096|r  153 IGTSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ  231 (474)
Q Consensus       153 ~~~~~~~V~E~~e~~~s~~-~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~  231 (474)
T Consensus       161 ~~~~~~~V~ElSSfql~~~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~ri~~----~~~~v~n~DD~~~~~l~~~~~  236 (487)
T PRK03369        161 DEPAELLAVELSSFQLHWAPSLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVAGLDDSRAAALLDTAP  236 (487)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHCC
T ss_conf             4788589998136543446666854788527887787542899999999755733----987999687688999974278


Q ss_pred             CCCCCCCCCCCCC--CEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf             1123333333222--20221021125842013555113444442000023567654333221121001232100000013
Q gi|254781096|r  232 NRKIITYGRHPQA--DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVK  309 (474)
Q Consensus       232 ~~~v~~fg~~~~~--d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~  309 (474)
T Consensus       237 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~----~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~  306 (487)
T PRK03369        237 APVRVGFRLGEPAAGELGV-----RDGHLVDRA-F----ADDLTLAPVDSIPVPGPVGVLDALAAAALARAVGVPAGAIA  306 (487)
T ss_pred             CCEEEEEECCCCCCCCEEE-----ECCEEEEEE-C----CCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             7679965327876442126-----536899841-3----67736724664588635369989999999998499999999


Q ss_pred             HHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCE
Q ss_conf             343100001582211014786047630-24455430222333101344321033303663147888999999986-1899
Q gi|254781096|r  310 KGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFG-DADI  387 (474)
Q Consensus       310 ~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~-~ad~  387 (474)
T Consensus       307 ~aL~~F~glphR~E~v~~~~Gv~fiNDSKaTn~~a~~~Al~s---~-~-~iilI~G--G~~Kg~~~-~~L~~~~~~~v~~  378 (487)
T PRK03369        307 DALASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILA---Y-P-RVVWIAG--GLLKGASV-DALVAEMASRLVG  378 (487)
T ss_pred             HHHHHCCCCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHH---C-C-CEEEECC--CCCCCCCH-HHHHHHHHHHEEE
T ss_conf             999857999985289999999999825766898899999861---5-5-5089615--54367770-7789999754259


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHHHCCC--C------------------------------CEEEECCHHHHHHHHH
Q ss_conf             9990866677643238999999999996389--9------------------------------8999889899999999
Q gi|254781096|r  388 VLISPVYSAGEKEIPGFSSPELVKNIKLQGH--P------------------------------QAYYMDSFDHLVSKIL  435 (474)
Q Consensus       388 vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~--~------------------------------~~~~~~~~~eav~~~~  435 (474)
T Consensus       379 v~l-----------~G~d~~~i~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AV~~A~  447 (487)
T PRK03369        379 AVL-----------IGRDRAVVAEALSRHAPDVPVVEVVTGEDAGMPATPEACVLDVTKVDDAGGTLGDAVMTAAVAAAR  447 (487)
T ss_pred             EEE-----------ECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             999-----------788889999999742776652133113222210013454433332100112035779999999999


Q ss_pred             HHCCCCCEEEEECCC-------CHHHHHHHHHHHHH
Q ss_conf             855898799994489-------98899999999987
Q gi|254781096|r  436 AIAEPGDFIIFFGAG-------NITQWAASLIGELE  464 (474)
Q Consensus       436 ~~~~~gDvVL~~GaG-------~~~~~~~~~~~~l~  464 (474)
T Consensus       448 ~~a~~GdvVLLSPacaSfD~f~nye~RG~~F~~~V~  483 (487)
T PRK03369        448 GLARPGDTVLLAPAGASFDQFTGYADRGDAFAAAVR  483 (487)
T ss_pred             HHCCCCCEEEECCHHHCHHCCCCHHHHHHHHHHHHH
T ss_conf             748999989979555341030799999999999999