HHsearch alignment for GI: 254781096 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=556.02 Aligned_cols=427 Identities=21% Similarity=0.268 Sum_probs=309.8
Q ss_pred CCCHH-HCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEE-CCCHHHCCCCCEEEECCCCCC
Q ss_conf 98531-2760799946146087899999987986999607899889999988988996-799788688989998889899
Q gi|254781096|r 1 MLNPQ-GMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSI-GHKVENIDNAEILVLSTAIDK 78 (474)
Q Consensus 1 ~~~~~-~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~-g~~~~~i~~~d~vV~spgi~~ 78 (474)
T Consensus 5 ~~~~~~~Gk~V~V~GlG~sG~a-~a~~L~~~G~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~ 82 (487)
T PRK03369 5 MLDPLTPGAPVLVAGAGVTGRA-VLAALTRFGARPTVCDDDPD-ALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPP 82 (487)
T ss_pred CCCCCCCCCEEEEEEECHHHHH-HHHHHHHCCCEEEEEECCCH-HHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCC
T ss_conf 4786579898999915683899-99999978697999989825-779998659948637622656467788998995799
Q ss_pred CCHHHHHHHHCCCCEEEHHHHHHHHHC------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 998899999779949953899886411------68515870457840477888864034444305753573333310014
Q gi|254781096|r 79 DNVECIAARERNIPIIFRSEMLAGLMR------CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR 152 (474)
Q Consensus 79 ~~~~l~~a~~~gi~i~~~~e~l~~~~~------~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~ 152 (474)
T Consensus 83 ~~p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~-~~~~GNiG~p~~-~~~ 160 (487)
T PRK03369 83 TAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRR-SVLCGNIGSPVL-DVL 160 (487)
T ss_pred CCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC-EEEEECCCHHHH-HHC
T ss_conf 899999999889907659999999874443367665599979887278999999999858998-599813665766-412
Q ss_pred CCCCCCCHHHCCCCCCHHH-HCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 6854200110232210122-118553034222022011000255666643013333332222222346501345432001
Q gi|254781096|r 153 IGTSEWIVVEADESDGTFI-RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ 231 (474)
Q Consensus 153 ~~~~~~~V~E~~e~~~s~~-~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~ 231 (474)
T Consensus 161 ~~~~~~~V~ElSSfql~~~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~ri~~----~~~~v~n~DD~~~~~l~~~~~ 236 (487)
T PRK03369 161 DEPAELLAVELSSFQLHWAPSLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVAGLDDSRAAALLDTAP 236 (487)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHCC
T ss_conf 4788589998136543446666854788527887787542899999999755733----987999687688999974278
Q ss_pred CCCCCCCCCCCCC--CEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf 1123333333222--20221021125842013555113444442000023567654333221121001232100000013
Q gi|254781096|r 232 NRKIITYGRHPQA--DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVK 309 (474)
Q Consensus 232 ~~~v~~fg~~~~~--d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~ 309 (474)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~----~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~ 306 (487)
T PRK03369 237 APVRVGFRLGEPAAGELGV-----RDGHLVDRA-F----ADDLTLAPVDSIPVPGPVGVLDALAAAALARAVGVPAGAIA 306 (487)
T ss_pred CCEEEEEECCCCCCCCEEE-----ECCEEEEEE-C----CCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 7679965327876442126-----536899841-3----67736724664588635369989999999998499999999
Q ss_pred HHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH-HCCE
Q ss_conf 343100001582211014786047630-24455430222333101344321033303663147888999999986-1899
Q gi|254781096|r 310 KGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFG-DADI 387 (474)
Q Consensus 310 ~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~-~ad~ 387 (474)
T Consensus 307 ~aL~~F~glphR~E~v~~~~Gv~fiNDSKaTn~~a~~~Al~s---~-~-~iilI~G--G~~Kg~~~-~~L~~~~~~~v~~ 378 (487)
T PRK03369 307 DALASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILA---Y-P-RVVWIAG--GLLKGASV-DALVAEMASRLVG 378 (487)
T ss_pred HHHHHCCCCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHH---C-C-CEEEECC--CCCCCCCH-HHHHHHHHHHEEE
T ss_conf 999857999985289999999999825766898899999861---5-5-5089615--54367770-7789999754259
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCC--C------------------------------CEEEECCHHHHHHHHH
Q ss_conf 9990866677643238999999999996389--9------------------------------8999889899999999
Q gi|254781096|r 388 VLISPVYSAGEKEIPGFSSPELVKNIKLQGH--P------------------------------QAYYMDSFDHLVSKIL 435 (474)
Q Consensus 388 vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~--~------------------------------~~~~~~~~~eav~~~~ 435 (474)
T Consensus 379 v~l-----------~G~d~~~i~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AV~~A~ 447 (487)
T PRK03369 379 AVL-----------IGRDRAVVAEALSRHAPDVPVVEVVTGEDAGMPATPEACVLDVTKVDDAGGTLGDAVMTAAVAAAR 447 (487)
T ss_pred EEE-----------ECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999-----------788889999999742776652133113222210013454433332100112035779999999999
Q ss_pred HHCCCCCEEEEECCC-------CHHHHHHHHHHHHH
Q ss_conf 855898799994489-------98899999999987
Q gi|254781096|r 436 AIAEPGDFIIFFGAG-------NITQWAASLIGELE 464 (474)
Q Consensus 436 ~~~~~gDvVL~~GaG-------~~~~~~~~~~~~l~ 464 (474)
T Consensus 448 ~~a~~GdvVLLSPacaSfD~f~nye~RG~~F~~~V~ 483 (487)
T PRK03369 448 GLARPGDTVLLAPAGASFDQFTGYADRGDAFAAAVR 483 (487)
T ss_pred HHCCCCCEEEECCHHHCHHCCCCHHHHHHHHHHHHH
T ss_conf 748999989979555341030799999999999999