HHsearch alignment for GI: 254781096 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=579.84 Aligned_cols=420 Identities=23% Similarity=0.321 Sum_probs=328.3
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHH--CCCEEEECCCHHH-CCCCCEEEECCCCCCCCHH
Q ss_conf 760799946146087899999987986999607899-88999998--8988996799788-6889899988898999988
Q gi|254781096|r 7 MGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILG-PNVQRLHK--QGIKVSIGHKVEN-IDNAEILVLSTAIDKDNVE 82 (474)
Q Consensus 7 ~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~~-~~~~~L~~--~gi~i~~g~~~~~-i~~~d~vV~spgi~~~~~~ 82 (474)
T Consensus 5 ~k~v~viGlG~sG~s~-a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~~~~p~ 83 (445)
T PRK04308 5 NKKILVAGLGGTGISM-IAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPD 83 (445)
T ss_pred CCEEEEEEECHHHHHH-HHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCCCCCHH
T ss_conf 9989999989999999-999997899199997999953189997436996899378636501599999989953899999
Q ss_pred HHHHHHCCCCEEEHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC--CC-CCCC
Q ss_conf 999997799499538998864116--851587045784047788886403444430575357333331001--46-8542
Q gi|254781096|r 83 CIAARERNIPIIFRSEMLAGLMRC--RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNA--RI-GTSE 157 (474)
Q Consensus 83 l~~a~~~gi~i~~~~e~l~~~~~~--~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~--~~-~~~~ 157 (474)
T Consensus 84 l~~a~~~gi~i~~~~el~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~~GNiG~p~~~~~~~~~~~~~d 162 (445)
T PRK04308 84 IEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGNIGTPVLEAELQREGKKAD 162 (445)
T ss_pred HHHHHHCCCCEECHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHCCCCCC
T ss_conf 99999759957159999999984169957999489983779999999999759962-99850375211114443278786
Q ss_pred CCHHHCCCCC-CHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 0011023221-012211855303422202201100025566664301333333222222234650134543200111233
Q gi|254781096|r 158 WIVVEADESD-GTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKII 236 (474)
Q Consensus 158 ~~V~E~~e~~-~s~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~ 236 (474)
T Consensus 163 ~~VlElSSfql~~~~~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~~---~~~~vln~dd~~~~~~~~--~~~~v~ 237 (445)
T PRK04308 163 VWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKR--AGREVK 237 (445)
T ss_pred EEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCCC---CCEEEECCCCHHHHHHHH--CCCCEE
T ss_conf 799996033446655437638998589856754535999999999974457---977999387199999986--699569
Q ss_pred CCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCC
Q ss_conf 33333222202210211258420135551134444420000235676543332211210012321000000133431000
Q gi|254781096|r 237 TYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFS 316 (474)
Q Consensus 237 ~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~ 316 (474)
T Consensus 238 ~~~~~~~~d~~~~~-----~~~~~--~~~~-----~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~ 305 (445)
T PRK04308 238 WFSLEHEADFWLER-----ETGRL--KQGN-----EDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305 (445)
T ss_pred EEECCCCCCEEEEC-----CCCEE--EECC-----CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 98137656368961-----66379--7468-----114543025667654798899999999982998899999987579
Q ss_pred CCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEECCC
Q ss_conf 01582211014786047630-244554302223331013443210333036631478889999999861-8999990866
Q gi|254781096|r 317 GIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISPVY 394 (474)
Q Consensus 317 g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~i~ 394 (474)
T Consensus 306 Gl~hR~E~v~~~~GV~~iNDSKaTn~---~at~~Al~~~-~~~i~lI~GG--~~Kg~d~-~~l~~~~~~~~~~v~~---- 374 (445)
T PRK04308 306 GLPHRVEKIGEKNGVVFIDDSKGTNV---GATAAAIAGL-QNPLFVILGG--MGKGQDF-TPLRDALAGKAKGVFL---- 374 (445)
T ss_pred CCCCCEEEEEEECCEEEEECCCCCCH---HHHHHHHHHC-CCCEEEEECC--CCCCCCH-HHHHHHHHHHCEEEEE----
T ss_conf 99986289986489889807988888---9999999827-7977999767--6677786-9999998752569999----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCC-------CHHHHHHHHHHHHH
Q ss_conf 67764323899999999999638998999889899999999855898799994489-------98899999999987
Q gi|254781096|r 395 SAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAG-------NITQWAASLIGELE 464 (474)
Q Consensus 395 ~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG-------~~~~~~~~~~~~l~ 464 (474)
T Consensus 375 -------~G~~~~~i~~~l~~~~-~~~~~~~~l~~Av~~a~~~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~ 443 (445)
T PRK04308 375 -------IGVDAPQIRRDLDGCG-LNLTDCATLEEAVQTAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFK 443 (445)
T ss_pred -------ECCCHHHHHHHHHHCC-CCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -------8979999999886379-85587687999999999748898989989734040130799999999999997