HHsearch alignment for GI: 254781096 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=0 Score=553.66 Aligned_cols=423 Identities=19% Similarity=0.285 Sum_probs=318.9
Q ss_pred CCCHHHCCEEEEEEECHHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHCCCEEEEC-CCHHHCCCCCEEEECCCCC
Q ss_conf 98531276079994614608789999998798--69996078998899999889889967-9978868898999888989
Q gi|254781096|r 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGH--QVQGSDVILGPNVQRLHKQGIKVSIG-HKVENIDNAEILVLSTAID 77 (474)
Q Consensus 1 ~~~~~~~~~i~~iGigG~G~s~lA~~l~~~G~--~V~g~D~~~~~~~~~L~~~gi~i~~g-~~~~~i~~~d~vV~spgi~ 77 (474)
T Consensus 1 ~~~~~~~KkvlV~GlG~sG~s-~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~l~~~d~vV~SPGI~ 79 (438)
T PRK04663 1 MDRWQGIKNVVVVGLGITGLS-VVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNQDWLAEADLVVTNPGIA 79 (438)
T ss_pred CCCCCCCCEEEEEEECHHHHH-HHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCCEEEECCCCC
T ss_conf 942259974999906785899-9999996699846999639889368876206976972788967836899999899769
Q ss_pred CCCHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99988999997799499538998864116851587045784047788886403444430575357333331001468542
Q gi|254781096|r 78 KDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSE 157 (474)
Q Consensus 78 ~~~~~l~~a~~~gi~i~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~ 157 (474)
T Consensus 80 ~~~p~~~~a~~~~i~i~~eiel~~~~~~-~~iIaVTGTnGKTTTtsli~~iL~~~g~~~-~~gGNiG~p~-~~~~~~~~d 156 (438)
T PRK04663 80 LATPEIQPVLAKGIPVVGDIELFAWAVD-KPVIAITGSNGKSTVTDLTGVMAKAAGVKV-AVGGNIGVPA-LDLLEQDAE 156 (438)
T ss_pred CCCHHHHHHHHCCCCEECHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHHHCCCCC-EEEEECCCHH-HHHHHCCCC
T ss_conf 9898999999869937038899976458-978999489982899999999998289970-6872157168-875304697
Q ss_pred CCHHHCCCCC-CHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 0011023221-012211855303422202201100025566664301333333222222234650134543200111233
Q gi|254781096|r 158 WIVVEADESD-GTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKII 236 (474)
Q Consensus 158 ~~V~E~~e~~-~s~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~ 236 (474)
T Consensus 157 ~~VlElSSfQLe~~~~~~p~iavilNIs~DHLD~h~s~e~Y~~aK~rIf~~~---~~~Ivn~dd~~~~~---~~~~~~~~ 230 (438)
T PRK04663 157 LYVLELSSFQLETTSSLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHA---ELAVVNRDDKQTYP---DTASLQLV 230 (438)
T ss_pred EEEEECCCCCHHHHCCCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEECCCHHHHHH---HHCCCCEE
T ss_conf 8998445101434035686333440688768777369999999999985369---78998653598887---76078579
Q ss_pred CCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCC
Q ss_conf 33333222202210211258420135551134444420000235676543332211210012321000000133431000
Q gi|254781096|r 237 TYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFS 316 (474)
Q Consensus 237 ~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~ 316 (474)
T Consensus 231 ~fg~~~~-~~~~~---~~~~~~-~~~~-~-----~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~ 299 (438)
T PRK04663 231 TFGFDQQ-EYGLI---EHQGRE-WLAD-N-----GQPVLASNELKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYN 299 (438)
T ss_pred EEECCCC-CCCEE---EECCEE-EEEE-C-----CEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 9604620-16559---727869-9985-8-----8776631430566455687799999999983999789865653358
Q ss_pred CCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-EEEEECC
Q ss_conf 01582211014786047630-2445543022233310134-4321033303663147888999999986189-9999086
Q gi|254781096|r 317 GIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQIC-PRKIIAIHQPHRYSRLSTLFDQFSSCFGDAD-IVLISPV 393 (474)
Q Consensus 317 g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~-~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad-~vil~~i 393 (474)
T Consensus 300 glpHRlE~v~~~~gv~~iNDSKaTN~~a---~~~Al~~~~~~~~i~lI~GG--~~Kg~d-~~~l~~~~~~~~~~~~~--- 370 (438)
T PRK04663 300 GLTHRCQVVADNRGIKWVNDSKATNVAS---TLAALSGLNLEGKLYLLVGG--VGKGAD-FSELKPVLATLNLQLCC--- 370 (438)
T ss_pred CCCCCEEEEEEECCEEEECCCCCCCHHH---HHHHHHHCCCCCCEEEEECC--CCCCCC-HHHHHHHHHHCCEEEEE---
T ss_conf 9887528999989999974787788789---99999836777847999657--666668-79999998523769999---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCC-------CHHHHHHHHHHHHHHC
Q ss_conf 667764323899999999999638998999889899999999855898799994489-------9889999999998741
Q gi|254781096|r 394 YSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAG-------NITQWAASLIGELELV 466 (474)
Q Consensus 394 ~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG-------~~~~~~~~~~~~l~~~ 466 (474)
T Consensus 371 --------~G~~~~~~~~~-----~~~~~~~~~l~~Av~~a~~~a~~gd~vLlSPacaSfD~F~nyeeRG~~F~~lv~~l 437 (438)
T PRK04663 371 --------FGEDGDQFMPL-----HPSARRFETMEDAIESISPQLKSGDMVMLSPACASFDQFANFMARGDAFAELAKQY 437 (438)
T ss_pred --------ECCCHHHHHHH-----CCCCEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf --------88889999743-----24534406799999999986779998998974403003069999999999999974