HHsearch alignment for GI: 254781096 and conserved domain: PRK04663

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=0  Score=553.66  Aligned_cols=423  Identities=19%  Similarity=0.285  Sum_probs=318.9

Q ss_pred             CCCHHHCCEEEEEEECHHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHCCCEEEEC-CCHHHCCCCCEEEECCCCC
Q ss_conf             98531276079994614608789999998798--69996078998899999889889967-9978868898999888989
Q gi|254781096|r    1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGH--QVQGSDVILGPNVQRLHKQGIKVSIG-HKVENIDNAEILVLSTAID   77 (474)
Q Consensus         1 ~~~~~~~~~i~~iGigG~G~s~lA~~l~~~G~--~V~g~D~~~~~~~~~L~~~gi~i~~g-~~~~~i~~~d~vV~spgi~   77 (474)
T Consensus         1 ~~~~~~~KkvlV~GlG~sG~s-~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~l~~~d~vV~SPGI~   79 (438)
T PRK04663          1 MDRWQGIKNVVVVGLGITGLS-VVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNQDWLAEADLVVTNPGIA   79 (438)
T ss_pred             CCCCCCCCEEEEEEECHHHHH-HHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCCEEEECCCCC
T ss_conf             942259974999906785899-9999996699846999639889368876206976972788967836899999899769


Q ss_pred             CCCHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99988999997799499538998864116851587045784047788886403444430575357333331001468542
Q gi|254781096|r   78 KDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSE  157 (474)
Q Consensus        78 ~~~~~l~~a~~~gi~i~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~~~~~  157 (474)
T Consensus        80 ~~~p~~~~a~~~~i~i~~eiel~~~~~~-~~iIaVTGTnGKTTTtsli~~iL~~~g~~~-~~gGNiG~p~-~~~~~~~~d  156 (438)
T PRK04663         80 LATPEIQPVLAKGIPVVGDIELFAWAVD-KPVIAITGSNGKSTVTDLTGVMAKAAGVKV-AVGGNIGVPA-LDLLEQDAE  156 (438)
T ss_pred             CCCHHHHHHHHCCCCEECHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHHHCCCCC-EEEEECCCHH-HHHHHCCCC
T ss_conf             9898999999869937038899976458-978999489982899999999998289970-6872157168-875304697


Q ss_pred             CCHHHCCCCC-CHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             0011023221-012211855303422202201100025566664301333333222222234650134543200111233
Q gi|254781096|r  158 WIVVEADESD-GTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKII  236 (474)
Q Consensus       158 ~~V~E~~e~~-~s~~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~  236 (474)
T Consensus       157 ~~VlElSSfQLe~~~~~~p~iavilNIs~DHLD~h~s~e~Y~~aK~rIf~~~---~~~Ivn~dd~~~~~---~~~~~~~~  230 (438)
T PRK04663        157 LYVLELSSFQLETTSSLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHA---ELAVVNRDDKQTYP---DTASLQLV  230 (438)
T ss_pred             EEEEECCCCCHHHHCCCCCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEECCCHHHHHH---HHCCCCEE
T ss_conf             8998445101434035686333440688768777369999999999985369---78998653598887---76078579


Q ss_pred             CCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHCCC
Q ss_conf             33333222202210211258420135551134444420000235676543332211210012321000000133431000
Q gi|254781096|r  237 TYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFS  316 (474)
Q Consensus       237 ~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~  316 (474)
T Consensus       231 ~fg~~~~-~~~~~---~~~~~~-~~~~-~-----~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~  299 (438)
T PRK04663        231 TFGFDQQ-EYGLI---EHQGRE-WLAD-N-----GQPVLASNELKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYN  299 (438)
T ss_pred             EEECCCC-CCCEE---EECCEE-EEEE-C-----CEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             9604620-16559---727869-9985-8-----8776631430566455687799999999983999789865653358


Q ss_pred             CCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-EEEEECC
Q ss_conf             01582211014786047630-2445543022233310134-4321033303663147888999999986189-9999086
Q gi|254781096|r  317 GIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQIC-PRKIIAIHQPHRYSRLSTLFDQFSSCFGDAD-IVLISPV  393 (474)
Q Consensus       317 g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~-~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad-~vil~~i  393 (474)
T Consensus       300 glpHRlE~v~~~~gv~~iNDSKaTN~~a---~~~Al~~~~~~~~i~lI~GG--~~Kg~d-~~~l~~~~~~~~~~~~~---  370 (438)
T PRK04663        300 GLTHRCQVVADNRGIKWVNDSKATNVAS---TLAALSGLNLEGKLYLLVGG--VGKGAD-FSELKPVLATLNLQLCC---  370 (438)
T ss_pred             CCCCCEEEEEEECCEEEECCCCCCCHHH---HHHHHHHCCCCCCEEEEECC--CCCCCC-HHHHHHHHHHCCEEEEE---
T ss_conf             9887528999989999974787788789---99999836777847999657--666668-79999998523769999---


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCC-------CHHHHHHHHHHHHHHC
Q ss_conf             667764323899999999999638998999889899999999855898799994489-------9889999999998741
Q gi|254781096|r  394 YSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAG-------NITQWAASLIGELELV  466 (474)
Q Consensus       394 ~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDvVL~~GaG-------~~~~~~~~~~~~l~~~  466 (474)
T Consensus       371 --------~G~~~~~~~~~-----~~~~~~~~~l~~Av~~a~~~a~~gd~vLlSPacaSfD~F~nyeeRG~~F~~lv~~l  437 (438)
T PRK04663        371 --------FGEDGDQFMPL-----HPSARRFETMEDAIESISPQLKSGDMVMLSPACASFDQFANFMARGDAFAELAKQY  437 (438)
T ss_pred             --------ECCCHHHHHHH-----CCCCEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             --------88889999743-----24534406799999999986779998998974403003069999999999999974