HHsearch alignment for GI: 254781096 and conserved domain: PRK10773

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed.
Probab=100.00  E-value=0  Score=413.10  Aligned_cols=406  Identities=18%  Similarity=0.284  Sum_probs=303.2

Q ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCHHHCCCCCEEEECCCCC-CCCHHHHHHHHCCCCEE-E-H---
Q ss_conf             9999998798699960789988999998898899679978868898999888989-99988999997799499-5-3---
Q gi|254781096|r   23 IAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAID-KDNVECIAARERNIPII-F-R---   96 (474)
Q Consensus        23 lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g~~~~~i~~~d~vV~spgi~-~~~~~l~~a~~~gi~i~-~-~---   96 (474)
T Consensus         6 l~~ia~~~~g~l~~~d~~i---------~~i----~~DSR~v~~g~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~~~~~~   72 (452)
T PRK10773          6 LSQLADILNAELQGADITI---------DAV----TTDTRKVTPGCLFVALKGERFDAHDFADQAKAAGAGALLVSRPLD   72 (452)
T ss_pred             HHHHHHHHCCEEECCCCCE---------EEE----EECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             9999998699998898157---------789----965871799988999447989979999999986998999847668


Q ss_pred             -----------HHHH---HHHHC---CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC---C-CC
Q ss_conf             -----------8998---86411---68515870457840477888864034444305753573333310014---6-85
Q gi|254781096|r   97 -----------SEML---AGLMR---CRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR---I-GT  155 (474)
Q Consensus        97 -----------~e~l---~~~~~---~~~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~---~-~~  155 (474)
T Consensus        73 ~~~~~i~V~d~~~al~~la~~~~~~~~~~vIgITGSnGKTTtk~~i~~iL~~~g~~-~~t~gn~n~~iG~p~tl~~~~~~  151 (452)
T PRK10773         73 IDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNT-LYTAGNLNNDIGVPLTLLRLTPE  151 (452)
T ss_pred             CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHCCCCH
T ss_conf             99998998999999999999875159975899991699625999999999972884-12456526887866076507921


Q ss_pred             CCCCHHHCCCCC-CHH----HHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             420011023221-012----211855303422202201100025566664301333333222222234650134543200
Q gi|254781096|r  156 SEWIVVEADESD-GTF----IRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARI  230 (474)
Q Consensus       156 ~~~~V~E~~e~~-~s~----~~~~P~iaVitNI~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~  230 (474)
T Consensus       152 ~~~~v~E~g~~~~gei~~~~~~~~pdiaviTNI~~dHLd~~gs~e~~~~aK~~Lf~~l~~~g~~IlN~Dd~~~~~~~~~~  231 (452)
T PRK10773        152 YDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQSVI  231 (452)
T ss_pred             HHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             33578532379853567664002667599984247765405769999999999981788798999979876799999983


Q ss_pred             CCCCCCCCCCC-CCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf             11123333333-22220221021125842013555113444442000023567654333221121001232100000013
Q gi|254781096|r  231 QNRKIITYGRH-PQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVK  309 (474)
Q Consensus       231 ~~~~v~~fg~~-~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~e~i~  309 (474)
T Consensus       232 ~~~~v~~~~~~~~~~d~~~~~i~~~~~g~~f~l~~~~~~-------~~v~l~l~G~hnv~NalaAiava~~lG~~~~~i~  304 (452)
T PRK10773        232 GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLHTPTGS-------VDVLLPLPGRHNIANALAAAALAMSVGATLDAVK  304 (452)
T ss_pred             CCCEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCE-------EEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             798289980687776189999999189418999967951-------8999707617689989999999998599999999


Q ss_pred             HHHHCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHH--C
Q ss_conf             343100001582211014786047630-244554302223331013443210333036631-478889999999861--8
Q gi|254781096|r  310 KGLASFSGIKRRFTLVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYS-RLSTLFDQFSSCFGD--A  385 (474)
Q Consensus       310 ~~L~~f~g~~~R~e~v~~~~gv~~idD-yahnP~~i~atl~al~~~~~~rii~i~~p~~~s-r~~~~~~e~~~~l~~--a  385 (474)
T Consensus       305 ~~L~~~~~v~GRme~i~~~~g~~iIdDsYNAnP~Sm~aal~~l~~~~~~ki~VLGdM~ELG~~s~~~H~~v~~~~~~~~i  384 (452)
T PRK10773        305 AGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHRQVGEAAKAAGI  384 (452)
T ss_pred             HHHHHCCCCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99972899867407997387089997425699799999999997577976999877377285789999999999997699


Q ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCE--EEEECCCCHHHHHHHHHHHH
Q ss_conf             9999908666776432389999999999963899899988989999999985589879--99944899889999999998
Q gi|254781096|r  386 DIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDF--IIFFGAGNITQWAASLIGEL  463 (474)
Q Consensus       386 d~vil~~i~~~~e~~~~g~~~~~l~~~i~~~~~~~~~~~~~~~eav~~~~~~~~~gDv--VL~~GaG~~~~~~~~~~~~l  463 (474)
T Consensus       385 d~v~~v-----------G~~~~~~~~----~~-~~~~~f~~~~~~~~~l~~~l~~~~~~~vLvKGSr~~~l--e~iv~~L  446 (452)
T PRK10773        385 DRVLSV-----------GKLSQAIST----AS-GVGEHFADKTALIARLKALLAEQQVITILVKGSRSAAM--EEVVRAL  446 (452)
T ss_pred             CEEEEE-----------CHHHHHHHH----HC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHH
T ss_conf             999998-----------878999987----41-87633699999999999887449984899985751149--9999999


Q ss_pred             HHCC
Q ss_conf             7417
Q gi|254781096|r  464 ELVT  467 (474)
Q Consensus       464 ~~~~  467 (474)
T Consensus       447 ~~~~  450 (452)
T PRK10773        447 QEKG  450 (452)
T ss_pred             HHHC
T ss_conf             9625