HHsearch alignment for GI: 254781096 and conserved domain: PRK11337
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.
Probab=91.36 E-value=1.1 Score=23.83 Aligned_cols=58 Identities=29% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCCEEEEEE-CCCCCCCCHHHHHHHHCC--CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 4786047630-244554302223331013--443210333036631478889999999861899999086667764323
Q gi|254781096|r 327 VWNDVHVFDD-YGHHPIEISSVLAAVRQI--CPRKIIAIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIP 402 (474)
Q Consensus 327 ~~~gv~~idD-yahnP~~i~atl~al~~~--~~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad~vil~~i~~~~e~~~~ 402 (474)
T Consensus 187 ~~~Dv~i~iS~sG~t~----e~i~~~~~Ak~~Ga~vI~IT~~------~--~SpLa---~~aD~vL~~~---~~e~~~~ 247 (293)
T PRK11337 187 QEGDVVLVVSHSGRTS----DVKAAVELAKQNGAKIICITHS------Y--HSPIA---KLADYIICSP---APETPLL 247 (293)
T ss_pred CCCCEEEEEECCCCCH----HHHHHHHHHHHCCCEEEEECCC------C--CCHHH---HHCCEEEECC---CCCCCCC
T ss_conf 9998899981899988----9999999999879949997699------9--98468---9589988648---8764434