HHsearch alignment for GI: 254781096 and conserved domain: PRK11337

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.
Probab=91.36  E-value=1.1  Score=23.83  Aligned_cols=58  Identities=29%  Similarity=0.274  Sum_probs=23.8

Q ss_pred             CCCCEEEEEE-CCCCCCCCHHHHHHHHCC--CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             4786047630-244554302223331013--443210333036631478889999999861899999086667764323
Q gi|254781096|r  327 VWNDVHVFDD-YGHHPIEISSVLAAVRQI--CPRKIIAIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIP  402 (474)
Q Consensus       327 ~~~gv~~idD-yahnP~~i~atl~al~~~--~~~rii~i~~p~~~sr~~~~~~e~~~~l~~ad~vil~~i~~~~e~~~~  402 (474)
T Consensus       187 ~~~Dv~i~iS~sG~t~----e~i~~~~~Ak~~Ga~vI~IT~~------~--~SpLa---~~aD~vL~~~---~~e~~~~  247 (293)
T PRK11337        187 QEGDVVLVVSHSGRTS----DVKAAVELAKQNGAKIICITHS------Y--HSPIA---KLADYIICSP---APETPLL  247 (293)
T ss_pred             CCCCEEEEEECCCCCH----HHHHHHHHHHHCCCEEEEECCC------C--CCHHH---HHCCEEEECC---CCCCCCC
T ss_conf             9998899981899988----9999999999879949997699------9--98468---9589988648---8764434