HHsearch alignment for GI: 254781096 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=97.96 E-value=0.00029 Score=48.16 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=67.0
Q ss_pred HHHCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCC---------------C-----HHHHHHHHCCCEEEECC----
Q ss_conf 31276079994614608789999998798699960789---------------9-----88999998898899679----
Q gi|254781096|r 4 PQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVIL---------------G-----PNVQRLHKQGIKVSIGH---- 59 (474)
Q Consensus 4 ~~~~~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~---------------~-----~~~~~L~~~gi~i~~g~---- 59 (474)
T Consensus 134 ~~tgkkVAVIGaGPAGLsa-A~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~ 212 (560)
T PRK12771 134 PDTGKRVAVIGGGPAGLSA-AYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGE 212 (560)
T ss_pred CCCCCEEEEECCCHHHHHH-HHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECC
T ss_conf 7789989998977899999-999997698589967678889888356875447589999999999964967983878446
Q ss_pred --CHHHC-CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHH
Q ss_conf --97886-8898999888989999889999977994995389988641
Q gi|254781096|r 60 --KVENI-DNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLM 104 (474)
Q Consensus 60 --~~~~i-~~~d~vV~spgi~~~~~~l~~a~~~gi~i~~~~e~l~~~~ 104 (474)
T Consensus 213 dit~~~L~~~yDAV~la~Ga~~~r~l~i~G~d~-~gV~~al~fL~~~~ 259 (560)
T PRK12771 213 DITLEQLEGDYDAVFVAIGAQLGKRLPIPGEDA-ANVLDAVSFLRAVE 259 (560)
T ss_pred CCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-CCCEEHHHHHHHHH
T ss_conf 567999717788899916878776089788776-55240599999975