HHsearch alignment for GI: 254781096 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=96.27  E-value=0.022  Score=35.30  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCC-----------CHHH---------HHHHHCCCEEEEC----CC---
Q ss_conf             6079994614608789999998798699960789-----------9889---------9999889889967----99---
Q gi|254781096|r    8 GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVIL-----------GPNV---------QRLHKQGIKVSIG----HK---   60 (474)
Q Consensus         8 ~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~-----------~~~~---------~~L~~~gi~i~~g----~~---   60 (474)
T Consensus       144 ~rVAviGAGPAGLa-CAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGrD~~l  222 (480)
T TIGR01318       144 KRVAVIGAGPAGLA-CADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGRDISL  222 (480)
T ss_pred             CEEEEECCCCCHHH-HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCH
T ss_conf             27899778860257-99987517855999747703076013688851102789999999997589278658165032555


Q ss_pred             HHHCCCCCEEEECCCCC
Q ss_conf             78868898999888989
Q gi|254781096|r   61 VENIDNAEILVLSTAID   77 (474)
Q Consensus        61 ~~~i~~~d~vV~spgi~   77 (474)
T Consensus       223 ~~LLe~YDAVFlGvGTY  239 (480)
T TIGR01318       223 DDLLEDYDAVFLGVGTY  239 (480)
T ss_pred             HHHHHHCCEEEEECCCC
T ss_conf             44431148489611433