HHsearch alignment for GI: 254781096 and conserved domain: TIGR01318
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=96.27 E-value=0.022 Score=35.30 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=52.9
Q ss_pred CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCC-----------CHHH---------HHHHHCCCEEEEC----CC---
Q ss_conf 6079994614608789999998798699960789-----------9889---------9999889889967----99---
Q gi|254781096|r 8 GPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVIL-----------GPNV---------QRLHKQGIKVSIG----HK--- 60 (474)
Q Consensus 8 ~~i~~iGigG~G~s~lA~~l~~~G~~V~g~D~~~-----------~~~~---------~~L~~~gi~i~~g----~~--- 60 (474)
T Consensus 144 ~rVAviGAGPAGLa-CAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGrD~~l 222 (480)
T TIGR01318 144 KRVAVIGAGPAGLA-CADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGRDISL 222 (480)
T ss_pred CEEEEECCCCCHHH-HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCH
T ss_conf 27899778860257-99987517855999747703076013688851102789999999997589278658165032555
Q ss_pred HHHCCCCCEEEECCCCC
Q ss_conf 78868898999888989
Q gi|254781096|r 61 VENIDNAEILVLSTAID 77 (474)
Q Consensus 61 ~~~i~~~d~vV~spgi~ 77 (474)
T Consensus 223 ~~LLe~YDAVFlGvGTY 239 (480)
T TIGR01318 223 DDLLEDYDAVFLGVGTY 239 (480)
T ss_pred HHHHHHCCEEEEECCCC
T ss_conf 44431148489611433