HHsearch alignment for GI: 254781096 and conserved domain: TIGR02068
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=100.00 E-value=0 Score=344.15 Aligned_cols=335 Identities=25% Similarity=0.373 Sum_probs=258.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEE------CCCCCCCCC-----CCC--C--CCCCCCHHHCCCCCCHHHH
Q ss_conf 515870457840477888864034444305753------573333310-----014--6--8542001102322101221
Q gi|254781096|r 108 KSISVSGTHGKTTTTSLIAALLEQGKFDPTVIN------GGIINSYGT-----NAR--I--GTSEWIVVEADESDGTFIR 172 (474)
Q Consensus 108 ~~IaVTGTnGKTTTt~ml~~il~~~g~~~~~~~------G~~~~~~~~-----~~~--~--~~~~~~V~E~~e~~~s~~~ 172 (474)
T Consensus 489 PiV~vTGTNGKTt~~RL~Ahil~~~G~~vG~T~tDG~Yi~~~~v~~GDntGP~SAr~~L~d~~VdaAVLEtar--GGiLR 566 (876)
T TIGR02068 489 PIVAVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKKLVEKGDNTGPKSARRILADPTVDAAVLETAR--GGILR 566 (876)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCHHHHHHCCCCCCEEEEEEECCC--CCCCC
T ss_conf 4888726898355788999999856982764203767755766624789871573012278880189986278--72206
Q ss_pred ----C-CCCCEEEEEEE-CCCHHHC--CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ----1-85530342220-2201100--02556666430133333322222223465013454320011123333333222
Q gi|254781096|r 173 ----L-PSDIVVVTNID-PEHLDYY--GDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQA 244 (474)
Q Consensus 173 ----~-~P~iaVitNI~-~DHld~~--~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~~~ 244 (474)
T Consensus 567 ~GLafD~c~VGvVtNi~~~DHLG~~dInt~e~La~Vk~vv~e~V~pDG~AVLNA~DP~va~mA~~~~G-~i~YF~~~~~~ 645 (876)
T TIGR02068 567 EGLAFDRCDVGVVTNIADGDHLGLGDINTIEDLADVKRVVVEVVKPDGYAVLNADDPMVAAMAEKCKG-KIAYFSMDPNN 645 (876)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCCCEEECCCCCHHHHHHHHCCC-CEEEEECCCCH
T ss_conf 65010321416898337766357886004788875101267888589827864788557999842896-18986218625
Q ss_pred CEEEEEEEECCCCCEE----EEEEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHCHHHHHHHHHHCCC--
Q ss_conf 2022102112584201----3555113444442000023567654--3332211210012321000000133431000--
Q gi|254781096|r 245 DIRYSNIRKYSGRSIF----DVSVQGNVTKDLTVIKDLSLPLIGE--HNISNACASIAVAYKLGLSSEDVKKGLASFS-- 316 (474)
Q Consensus 245 d~~~~~i~~~~~~~~f----~~~~~~~~~~~~~~~~~~~l~l~G~--Hn~~NalaAia~a~~lgi~~e~i~~~L~~f~-- 316 (474)
T Consensus 646 ~~~~~H~~~G~~avy~~~G~ivia~G~~~~~~~~~~~iPlT~GG~~~F~ieN~LAA~aAA~~~~v~ie~Ir~G~~tF~~d 725 (876)
T TIGR02068 646 PTVAKHIAKGGRAVYYENGYIVIAKGGAEVAIARIAEIPLTMGGRVAFQIENALAAVAAAWALGVDIELIRAGIRTFKAD 725 (876)
T ss_pred HHHHHHHHCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH
T ss_conf 89999985598999986787999747832267899728867577157888899999999853489899999898733010
Q ss_pred --CCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHCCCC-CCCEEEEECCCCHHHHHHHHHHHHHHHH-CCEEEEEC
Q ss_conf --0158221101478604763024455430222333101344-3210333036631478889999999861-89999908
Q gi|254781096|r 317 --GIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICP-RKIIAIHQPHRYSRLSTLFDQFSSCFGD-ADIVLISP 392 (474)
Q Consensus 317 --g~~~R~e~v~~~~gv~~idDyahnP~~i~atl~al~~~~~-~rii~i~~p~~~sr~~~~~~e~~~~l~~-ad~vil~~ 392 (474)
T Consensus 726 ~~~~PGrfnLF-n~~~~~~lvDY~HNp~~~~av~~a~~~~~A~rr~gV~ggpG--DR~De~l~~~G~~~g~~FD~i~~ke 802 (876)
T TIGR02068 726 AAQAPGRFNLF-NLGGAHVLVDYGHNPAAIEAVVEAIRNLPARRRIGVIGGPG--DRRDEDLVKLGEILGGAFDQIILKE 802 (876)
T ss_pred HHCCCCEEEEE-ECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 10689503222-25882899965779789999999996178784789980787--7865889999999754068799962
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCC-CC-CEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 6667764323899999999999638-99-89998898999999998558987999944
Q gi|254781096|r 393 VYSAGEKEIPGFSSPELVKNIKLQG-HP-QAYYMDSFDHLVSKILAIAEPGDFIIFFG 448 (474)
Q Consensus 393 i~~~~e~~~~g~~~~~l~~~i~~~~-~~-~~~~~~~~~eav~~~~~~~~~gDvVL~~G 448 (474)
T Consensus 803 D~~~rGkR~~G~a~~Ll~~G~~~~~~~~~~i~~i~de~~Ai~~~L~~~~~GdL~vi~~ 860 (876)
T TIGR02068 803 DDDLRGKRARGEAAALLRQGLIQAAMRKAAIEEILDETEAIKAALDSLEAGDLVVILP 860 (876)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 7453578887358999996353057765679999889999999984214688699970