HHsearch alignment for GI: 254781096 and conserved domain: TIGR02374
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=96.00 E-value=0.021 Score=35.47 Aligned_cols=77 Identities=27% Similarity=0.416 Sum_probs=55.5
Q ss_pred HHHHHHH--HHHHHHCCCEEEEEECCCCHH------------HHHHHHCCCEEEECC--C---------HHHCC------
Q ss_conf 4608789--999998798699960789988------------999998898899679--9---------78868------
Q gi|254781096|r 17 GIGMSGI--AEVLHNTGHQVQGSDVILGPN------------VQRLHKQGIKVSIGH--K---------VENID------ 65 (474)
Q Consensus 17 G~G~s~l--A~~l~~~G~~V~g~D~~~~~~------------~~~L~~~gi~i~~g~--~---------~~~i~------ 65 (474)
T Consensus 154 GGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~D 233 (813)
T TIGR02374 154 GGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKD 233 (813)
T ss_pred CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCC
T ss_conf 67415889999998779706446764898999999999999999998579579861761105764156401231224238
Q ss_pred ----CCCEEEECCCCCCCCHHHHHHHHCCCCEEEH
Q ss_conf ----8989998889899998899999779949953
Q gi|254781096|r 66 ----NAEILVLSTAIDKDNVECIAARERNIPIIFR 96 (474)
Q Consensus 66 ----~~d~vV~spgi~~~~~~l~~a~~~gi~i~~~ 96 (474)
T Consensus 234 G~~l~aDlvv~A~GirP~~---~LA~~aGl~v~~R 265 (813)
T TIGR02374 234 GSSLEADLVVFAAGIRPRD---ELAAEAGLKVNDR 265 (813)
T ss_pred CCEEEECEEEEECCCCCCH---HHHHHCCCCCCCC
T ss_conf 9788703799951566636---8998659735476