HHsearch alignment for GI: 254781096 and conserved domain: TIGR02374

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=96.00  E-value=0.021  Score=35.47  Aligned_cols=77  Identities=27%  Similarity=0.416  Sum_probs=55.5

Q ss_pred             HHHHHHH--HHHHHHCCCEEEEEECCCCHH------------HHHHHHCCCEEEECC--C---------HHHCC------
Q ss_conf             4608789--999998798699960789988------------999998898899679--9---------78868------
Q gi|254781096|r   17 GIGMSGI--AEVLHNTGHQVQGSDVILGPN------------VQRLHKQGIKVSIGH--K---------VENID------   65 (474)
Q Consensus        17 G~G~s~l--A~~l~~~G~~V~g~D~~~~~~------------~~~L~~~gi~i~~g~--~---------~~~i~------   65 (474)
T Consensus       154 GGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~D  233 (813)
T TIGR02374       154 GGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKD  233 (813)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCC
T ss_conf             67415889999998779706446764898999999999999999998579579861761105764156401231224238


Q ss_pred             ----CCCEEEECCCCCCCCHHHHHHHHCCCCEEEH
Q ss_conf             ----8989998889899998899999779949953
Q gi|254781096|r   66 ----NAEILVLSTAIDKDNVECIAARERNIPIIFR   96 (474)
Q Consensus        66 ----~~d~vV~spgi~~~~~~l~~a~~~gi~i~~~   96 (474)
T Consensus       234 G~~l~aDlvv~A~GirP~~---~LA~~aGl~v~~R  265 (813)
T TIGR02374       234 GSSLEADLVVFAAGIRPRD---ELAAEAGLKVNDR  265 (813)
T ss_pred             CCEEEECEEEEECCCCCCH---HHHHHCCCCCCCC
T ss_conf             9788703799951566636---8998659735476