HHsearch alignment for GI: 254781096 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.73 E-value=0.76 Score=24.81 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=43.8
Q ss_pred EEEEEEECHHHHHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECC--CHH----HCCCCCEEEECCC
Q ss_conf 07999461460878--9999998798699960789988999998898899679--978----8688989998889
Q gi|254781096|r 9 PIHFVGIGGIGMSG--IAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGH--KVE----NIDNAEILVLSTA 75 (474)
Q Consensus 9 ~i~~iGigG~G~s~--lA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~i~~g~--~~~----~i~~~d~vV~spg 75 (474)
T Consensus 2 riLVT--GgtGfiG~~l~~~L~~~G~~V~~l~r~~~~-~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa 73 (328)
T TIGR03466 2 KVLVT--GATGFVGSAVVRLLLERGEEVRVLVRPTSD-RRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHVAA 73 (328)
T ss_pred EEEEE--CCCCHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECC
T ss_conf 49998--677799999999999784989999899986-5565217977998207999999999717858976134