HHsearch alignment for GI: 254781096 and conserved domain: pfam08245
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=100.00 E-value=3.8e-37 Score=272.45 Aligned_cols=179 Identities=35% Similarity=0.430 Sum_probs=150.2
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC-----CCCCCCHHHCCCCCCHHHH----CCCCCEEEEE
Q ss_conf 704578404778888640344443057535733333100146-----8542001102322101221----1855303422
Q gi|254781096|r 112 VSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARI-----GTSEWIVVEADESDGTFIR----LPSDIVVVTN 182 (474)
Q Consensus 112 VTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~-----~~~~~~V~E~~e~~~s~~~----~~P~iaVitN 182 (474)
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~-~~~g~~~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~P~iaviTN 79 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVV-GTGGNTNNAIGLPLLLALMERKGADYAVLELSSFGLGEGRLEGLAKPDIAVITN 79 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEEC
T ss_conf 9375868999999999998389989-983884745779999976664699689998327771076552777899999945
Q ss_pred EECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 20220110002556666430133333322222223465013454320011123333333222202210211258420135
Q gi|254781096|r 183 IDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDV 262 (474)
Q Consensus 183 I~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~ 262 (474)
T Consensus 80 i~~DHld~~~s~e~~~~~K~~i~~~~~~~g~~v~n~Dd~~~~~~~~~~-~~~~~t~g~~~~~d~~~~~i~~~~~~~~~~~ 158 (188)
T pfam08245 80 ISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPELAKRLKNA-GAKVITFGLENEADDRAANIYVSSEGGKIVL 158 (188)
T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC-CCCEEEEECCCCCCEEEEEEEECCCCCEEEE
T ss_conf 765564662179999999999997299999999989888899999866-9846998568765604467899589968999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 551134444420000235676543332211210012
Q gi|254781096|r 263 SVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVA 298 (474)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a 298 (474)
T Consensus 159 ~~~~~------~~~~~~l~l~G~HNv~NalaAia~A 188 (188)
T pfam08245 159 FTVPG------GELEISLPLPGRHNVYNALAALAAA 188 (188)
T ss_pred EECCC------EEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 96299------3899998866399999999999959