HHsearch alignment for GI: 254781096 and conserved domain: pfam08245

>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=100.00  E-value=3.8e-37  Score=272.45  Aligned_cols=179  Identities=35%  Similarity=0.430  Sum_probs=150.2

Q ss_pred             EECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC-----CCCCCCHHHCCCCCCHHHH----CCCCCEEEEE
Q ss_conf             704578404778888640344443057535733333100146-----8542001102322101221----1855303422
Q gi|254781096|r  112 VSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARI-----GTSEWIVVEADESDGTFIR----LPSDIVVVTN  182 (474)
Q Consensus       112 VTGTnGKTTTt~ml~~il~~~g~~~~~~~G~~~~~~~~~~~~-----~~~~~~V~E~~e~~~s~~~----~~P~iaVitN  182 (474)
T Consensus         1 VTGT~GKTTt~~ml~~iL~~~g~~~-~~~g~~~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~P~iaviTN   79 (188)
T pfam08245         1 ITGTNGKTTTTELIAALLSAAGGVV-GTGGNTNNAIGLPLLLALMERKGADYAVLELSSFGLGEGRLEGLAKPDIAVITN   79 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCEEEEEC
T ss_conf             9375868999999999998389989-983884745779999976664699689998327771076552777899999945


Q ss_pred             EECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf             20220110002556666430133333322222223465013454320011123333333222202210211258420135
Q gi|254781096|r  183 IDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDV  262 (474)
Q Consensus       183 I~~DHld~~~s~e~y~~aK~~i~~~~~~~g~~vin~Dd~~~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~  262 (474)
T Consensus        80 i~~DHld~~~s~e~~~~~K~~i~~~~~~~g~~v~n~Dd~~~~~~~~~~-~~~~~t~g~~~~~d~~~~~i~~~~~~~~~~~  158 (188)
T pfam08245        80 ISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPELAKRLKNA-GAKVITFGLENEADDRAANIYVSSEGGKIVL  158 (188)
T ss_pred             CHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC-CCCEEEEECCCCCCEEEEEEEECCCCCEEEE
T ss_conf             765564662179999999999997299999999989888899999866-9846998568765604467899589968999


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             551134444420000235676543332211210012
Q gi|254781096|r  263 SVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVA  298 (474)
Q Consensus       263 ~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a  298 (474)
T Consensus       159 ~~~~~------~~~~~~l~l~G~HNv~NalaAia~A  188 (188)
T pfam08245       159 FTVPG------GELEISLPLPGRHNVYNALAALAAA  188 (188)
T ss_pred             EECCC------EEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             96299------3899998866399999999999959