RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781096|ref|YP_003065509.1|
UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
(474 letters)
>gnl|CDD|179018 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase;
Provisional.
Length = 461
Score = 679 bits (1756), Expect = 0.0
Identities = 223/465 (47%), Positives = 308/465 (66%), Gaps = 9/465 (1%)
Query: 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHK 60
+ + + IHFVGIGGIGMSG+AEVL N G++V GSD+ QRL + G + IGH
Sbjct: 1 VPELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHD 60
Query: 61 VENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTT 120
ENI +A+++V S+AI DN E +AARE IP++ R+EMLA LMR R SI+V+GTHGKTT
Sbjct: 61 AENIKDADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTT 120
Query: 121 TTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVV 180
TTSL+A +L + DPT + GGI+N+ GTNAR+G S++ V EADESD +F++L DI +V
Sbjct: 121 TTSLLAHVLAEAGLDPTFLIGGILNAAGTNARLGNSDYFVAEADESDRSFLKLHPDIAIV 180
Query: 181 TNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240
TNID +HLDYYGDF ++ AF +F N+PFYG V C D PE+R L+ R+ +R +ITYG
Sbjct: 181 TNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRV-SRPVITYGF 239
Query: 241 HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYK 300
AD R NIR+ G + FDV +G V+ D +LPL G HN+ NA A+IAVA +
Sbjct: 240 SEDADFRAENIRQDGGGTHFDVLRRG------EVLGDFTLPLPGRHNVLNALAAIAVALE 293
Query: 301 LGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICP-RKI 359
LG+ E +++ LA+F G+KRRF G V + DDY HHP EI + L A RQ P ++I
Sbjct: 294 LGIDDEAIREALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYPDKRI 353
Query: 360 IAIHQPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHP 419
+A+ QPHRYSR L D+F+ DAD V++ +Y+AGE+ I G S +L + IK +GH
Sbjct: 354 VAVFQPHRYSRTRDLLDEFAEALSDADEVILLDIYAAGEEPIGGVDSEDLARKIK-RGHR 412
Query: 420 QAYYMDSFDHLVSKILAIAEPGDFIIFFGAGNITQWAASLIGELE 464
++ + L + + +PGD ++ GAG+IT+ A +L+ L
Sbjct: 413 DPIFVPDLEDLAELLAEVLKPGDLVLTMGAGDITKLARALLELLL 457
>gnl|CDD|162195 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase.
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase (murein tripeptide ligase) is
described by TIGR01081.
Length = 448
Score = 513 bits (1323), Expect = e-146
Identities = 207/454 (45%), Positives = 292/454 (64%), Gaps = 8/454 (1%)
Query: 9 PIHFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAE 68
IHFVGIGGIGMSGIAE+L N G+QV GSD+ +RL GI + IGH EN+D+A+
Sbjct: 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDAD 60
Query: 69 ILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAAL 128
++V+S AI DN E + A+ER IP+I R+EMLA LMR R SI+V+GTHGKTTTT++IA +
Sbjct: 61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVI 120
Query: 129 LEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVVTNIDPEHL 188
L++ DPTV+ GG++ GTNAR+G+ E++V EADESD +F+ L ++ +VTNI+P+HL
Sbjct: 121 LKEAGLDPTVVVGGLVKEAGTNARLGSGEYLVAEADESDASFLHLQPNVAIVTNIEPDHL 180
Query: 189 D-YYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIR 247
D Y F ++AAF KFI N+PFYG AV+C D P +R L+ + + I G AD R
Sbjct: 181 DTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKATEQVITYGGSGEDADYR 240
Query: 248 YSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSED 307
NI++ F V +G + + T+ L G HN+ NA A+IAVA +LG+ E
Sbjct: 241 AENIQQSGAEGKFSVRGKGKLYLEFTL------NLPGRHNVLNALAAIAVALELGIDFEA 294
Query: 308 VKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICP-RKIIAIHQPH 366
+ + LA+F G+KRRF ++G + V + DDY HHP EI + L A RQ P ++I+ + QPH
Sbjct: 295 ILRALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYPDKRIVVVFQPH 354
Query: 367 RYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDS 426
RYSR LFD F+ DAD +++ +Y+AGE+ I G L + I G + Y++
Sbjct: 355 RYSRTRDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKITQLGKIEPYFVPD 414
Query: 427 FDHLVSKILAIAEPGDFIIFFGAGNITQWAASLI 460
LV + A+ + GD I+ GAG+I + A L+
Sbjct: 415 LAELVEFLAAVLQSGDLILTMGAGDIIKLARELL 448
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Length = 809
Score = 309 bits (792), Expect = 1e-84
Identities = 166/449 (36%), Positives = 245/449 (54%), Gaps = 26/449 (5%)
Query: 11 HFVGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAEIL 70
HF+GIGGIGMS +A +L + G+ V GSD+ G V++L +G + +GH+ E++ ++
Sbjct: 8 HFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVV 67
Query: 71 VLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLE 130
V S++I KDNVE ++A+ R ++ R+E+LA LM+ + SI VSG+HGKTT +SLI A+ +
Sbjct: 68 VYSSSISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQ 127
Query: 131 QGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVVTNIDPEHL-D 189
+ K DP+ GG +N G N G+SE+ V EADESDG+ + V+TNID EHL +
Sbjct: 128 EAKKDPSYAIGG-LNQEGLNGYSGSSEYFVAEADESDGSLKHYTPEFSVITNIDNEHLSN 186
Query: 190 YYGDFNAIRAAFYKF---IDNIP--FYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQA 244
+ GD + A+ F + I FY D P ++ +Q +YG
Sbjct: 187 FEGDRELLLASIQDFARKVQQINKCFYN-----GDCPRLKG---CLQG---HSYGFSSSC 235
Query: 245 DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLS 304
D+ + + RS F G V +D+ L L+G HN++NA A++ +A LG+
Sbjct: 236 DLHILSYYQEGWRSYFSAKFLG------VVYQDIELNLVGMHNVANAAAAMGIALTLGID 289
Query: 305 SEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQ-ICPRKIIAIH 363
++ L FSG++RR +DY HHP EIS L AVR + R+IIAI
Sbjct: 290 EGAIRNALKGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVGLRRIIAIC 349
Query: 364 QPHRYSRLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYY 423
QPHR+SRL D F S F DAD V+++ VYSAGE+ S +L + I + Y
Sbjct: 350 QPHRFSRLRECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQKLAEAISQSSIVKCTY 409
Query: 424 MDSFDHLVSKILAIAEPGDFIIFFGAGNI 452
+ F + + D + GAGNI
Sbjct: 410 V-PFHEIQRYLEQSIRVHDVCVSLGAGNI 437
>gnl|CDD|130153 TIGR01081, mpl,
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase. Alternate name: murein
tripeptide ligase.
Length = 448
Score = 193 bits (492), Expect = 7e-50
Identities = 132/456 (28%), Positives = 214/456 (46%), Gaps = 38/456 (8%)
Query: 10 IHFVGIGGIGMSGIAEVLHNTGHQVQGSDV-ILGPNVQRLHKQGIKVSIGHKVENID-NA 67
IH +GI G M G+A + GH+V GSD + P +L QGI++ G ++
Sbjct: 2 IHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKP 61
Query: 68 EILVLSTAIDKDNVECIAARERNIPIIFRSEMLAG-LMRCRKSISVSGTHGKTTTTSLIA 126
+++V+ A+ + N A N+P + L ++ R ++V+GTHGKTTT S++A
Sbjct: 62 DLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLA 121
Query: 127 ALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIV-------V 179
+LEQ P + GG+ ++G +AR+G S + V+EADE D F S V V
Sbjct: 122 WVLEQCGLKPGFLIGGVPGNFGVSARLGESPFFVIEADEYDTAFFDKRSKFVHYRPRTLV 181
Query: 180 VTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIAR---IQNRKII 236
+ N++ +H D + D AI+ F+ + +P G + ++ +A+ +
Sbjct: 182 LNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFG 241
Query: 237 TYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIA 296
G QA+ + + S FDV + G + ++ L+G HN+ NA +IA
Sbjct: 242 EQG-EWQAE------KITADGSHFDVLLDGE------KVGEVKWSLVGRHNMHNALMAIA 288
Query: 297 VAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQ-IC 355
A +G++ ED + L SF KRR L G N + V+DD+ HHP I + L +RQ +
Sbjct: 289 AARHVGVAIEDACEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVG 348
Query: 356 PRKIIAIHQPHRYS-RLSTLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIK 414
+I+A+ +P + +L D + G AD V + P V +
Sbjct: 349 GARILAVLEPRSNTMKLGVHKDDLAPSLGRADQVFL----------YQPGQIPWDVAEVA 398
Query: 415 LQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAG 450
Q A FD V+ I+ A+PGD I+ G
Sbjct: 399 AQCVQPANVSADFDAFVAMIVKNAQPGDHILVMSNG 434
>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Length = 433
Score = 141 bits (357), Expect = 4e-34
Identities = 115/451 (25%), Positives = 188/451 (41%), Gaps = 62/451 (13%)
Query: 13 VGIGGIGMSGI--AEVLHNTGHQVQGSDVILGPNVQRLHKQ-----GIKVSIGHKVENID 65
+ I G+G +G A LH G +V +D+ ++ Q G + G +E+++
Sbjct: 2 ILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLN 61
Query: 66 NAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLI 125
NA+++V S I D+ AA +R IP++ E+ L+ ++++GT+GKTTTTSL+
Sbjct: 62 NADLVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLVP-LPVVAITGTNGKTTTTSLL 120
Query: 126 AALLEQGKFDPTVINGGIINSYGTNARIG----TSEWIVVEADESDGTFIRLPS---DIV 178
LL + + G I GT A +E V+E S S +I
Sbjct: 121 YHLL-KAAGLKAFLGGNI----GTPALEVLDQEGAELYVLEL--SSFQLETTESLRPEIA 173
Query: 179 VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITY 238
++ NI +HLD++G F AA K AV+ D P L + + + I
Sbjct: 174 LILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFS 233
Query: 239 GRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVA 298
+ D + G + DL L+G HN N A+IA+A
Sbjct: 234 ---VEKDAERGLCIRDGGLYLKP--------------NDLEGSLLGLHNAENILAAIALA 276
Query: 299 YKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRK 358
LGL+ E + + L SF G+ R VG N VH ++D + + LAA+
Sbjct: 277 KSLGLNLEAILEALRSFKGLPHRLEYVGQKNGVHFYND--SKATNVHATLAALSAF-DNP 333
Query: 359 IIAIHQPHRYSRLSTLFDQ---FSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKL 415
+I I + D+ FS A + + V + GE + ++ +K
Sbjct: 334 VILI--------VGGD-DKGADFSPLAPAAAGKVKA-VLAIGE------DAAKIAPLLKE 377
Query: 416 QGHPQAYYMDSFDHLVSKILAIAEPGDFIIF 446
G Y ++S + V +A PGD ++
Sbjct: 378 AGLS-VYLVESLEEAVQAAREVASPGDVVLL 407
>gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 128 bits (324), Expect = 3e-30
Identities = 103/342 (30%), Positives = 159/342 (46%), Gaps = 50/342 (14%)
Query: 17 GIGMSGI--AEVLHNTGHQVQGSDV-ILGPN--VQRLHKQGIKVSIG-HKVENID-NAEI 69
G+ SG A++LH G V +D N Q L ++GIKV G H +E +D + ++
Sbjct: 12 GLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDL 71
Query: 70 LVLSTAIDKDNVECIAARERNIPIIFRSEM-LAGLMRCRKSISVSGTHGKTTTTSLIAAL 128
+V + I N A E+ IPII +E+ LA L+ I ++G++GKTTTT+LI +
Sbjct: 72 MVKNPGIPYTNPMVEKALEKGIPII--TEVELAYLISEAPIIGITGSNGKTTTTTLIGEM 129
Query: 129 LEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPS-----------DI 177
L+ G ++ G I G A SE + +A D + L S I
Sbjct: 130 LKAGGQHA-LLAGNI----GYPA----SE-VAQKATADDTLVMELSSFQLMGIETFRPHI 179
Query: 178 VVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIIT 237
V+TNI P HLDY+G F AA + N + V+ D EV+ L + + ++
Sbjct: 180 AVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEVKELAKQTKA-TVVP 238
Query: 238 YGRH--PQADIRYSNIRKYS-GRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACAS 294
+ + + Y G I D+ LP G HN+ NA A+
Sbjct: 239 FSTTEKVEDGAYIKDGALYFKGEKIMAAD-------------DIVLP--GSHNLENALAA 283
Query: 295 IAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
IA A LG+S+E +++ L++FSG+K R VG + ++D
Sbjct: 284 IAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDGRKFYND 325
>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain.
Length = 188
Score = 127 bits (321), Expect = 6e-30
Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 19/197 (9%)
Query: 112 VSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIG-----TSEWIVVEADES 166
++GT+GKTTTT LIAALL G N+ G + +++ V+E
Sbjct: 1 ITGTNGKTTTTELIAALLSA-AGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSF 59
Query: 167 DGTFIRL----PSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPE 222
RL DI V+TNI P+HLDY+G AA + + +P G AV+ D PE
Sbjct: 60 GLGEGRLEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPE 119
Query: 223 VRSLIARIQNRKIITYGRHPQADIRYSNIRKYS-GRSIFDVSVQGNVTKDLTVIKDLSLP 281
+ + K+IT+G +AD R +NI S G I +V G ++SLP
Sbjct: 120 LAKRLKNAGA-KVITFGLENEADDRAANIYVSSEGGKIVLFTVPGG-------ELEISLP 171
Query: 282 LIGEHNISNACASIAVA 298
L G HN+ NA A++A A
Sbjct: 172 LPGRHNVYNALAALAAA 188
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 114 bits (288), Expect = 5e-26
Identities = 84/348 (24%), Positives = 154/348 (44%), Gaps = 58/348 (16%)
Query: 17 GIGMSGIA--EVLHNTGHQVQGSD----VILGPNVQRLHKQGIKVSIG-HKVENIDNAEI 69
G G+SG+A + L G +V +D L ++ L + GI++ +G + E ++ ++
Sbjct: 12 GAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDL 71
Query: 70 LVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSI-SVSGTHGKTTTTSLIAAL 128
+V+S + D+ + A ++ I +I E+ + I +++GT+GKTTTT+L+ +
Sbjct: 72 VVVSPGVPLDSPPVVQAHKKGIEVI--GEVELAYRFSKAPIVAITGTNGKTTTTTLLGEI 129
Query: 129 LEQGKFDPTVINGGI-------INSYGTNARIGTSEWIVVEADESD---GTFIRLPSDIV 178
+ T++ G I + YG E ++ A+ S T +
Sbjct: 130 FKN-AGRKTLVAGNIGYPLIDAVEEYG--------EDDIIVAEVSSFQLETIKEFKPKVG 180
Query: 179 VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITY 238
+ NI P+HLD + A + +N + V+ D P RSL + + R I
Sbjct: 181 CILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSLAKKAKARVIF-- 238
Query: 239 GRHPQADIRYSNIRKYSGRSIFD--VSVQGN--------VTKDLTVIKDLSLPLIGEHNI 288
+S +S+ + V V+ +++ I ++ +P GEHN+
Sbjct: 239 ---------------FSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIP--GEHNL 281
Query: 289 SNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
NA A+ A AY LG+S + + L +F G++ R V N V +D
Sbjct: 282 ENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAEINGVKFIND 329
>gnl|CDD|178894 PRK00139, murE,
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional.
Length = 460
Score = 110 bits (278), Expect = 8e-25
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 18/187 (9%)
Query: 176 DIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKI 235
D+ V TN+ +HLDY+G AA + AV+ D R L+
Sbjct: 186 DVAVFTNLSRDHLDYHGTMEDYLAAKARLFSE--LGLAAVINADDEVGRRLL---ALPDA 240
Query: 236 ITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASI 295
AD+R +++ Y+ T++ ++ PLIG N+SN A++
Sbjct: 241 YAVSMAG-ADLRATDVE-YTDSGQ-----------TFTLVTEVESPLIGRFNVSNLLAAL 287
Query: 296 AVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQIC 355
A LG+ ED LA G+ R V V DY H P + VL A+R
Sbjct: 288 AALLALGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHA 347
Query: 356 PRKIIAI 362
++I +
Sbjct: 348 KGRLICV 354
Score = 36.3 bits (85), Expect = 0.020
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 110 ISVSGTHGKTTTTSLIAALLEQ 131
I V+GT+GKTTT L+A +L
Sbjct: 98 IGVTGTNGKTTTAYLLAQILRL 119
>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. A
close homolog, scoring just below the trusted cutoff, is
found (with introns) in Arabidopsis thaliana. Its role
is unknown.
Length = 464
Score = 109 bits (275), Expect = 1e-24
Identities = 76/282 (26%), Positives = 111/282 (39%), Gaps = 31/282 (10%)
Query: 108 KSISVSGTHGKTTTTSLIAALLEQ-GK---FDPTVING-GIINSYGTNARIGTSEWIVV- 161
K I V+GT+GKTTTTSLIA LL GK T+ G + A + T E + +
Sbjct: 86 KVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQ 145
Query: 162 ----EADESDGTFIRLPS---------------DIVVVTNIDPEHLDYYGDFNAIRAAFY 202
E E+ + + D V TN+ +HLD++G AA
Sbjct: 146 STLAEMVEAGAQYAVMEVSSHALAQGRVRGVRFDAAVFTNLSRDHLDFHGTMENYFAAKA 205
Query: 203 KFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITY-GRHPQADIRYSNIRKYSGRSIFD 261
+ FAV+ +D + R+ K IT AD R +I+ F+
Sbjct: 206 SLFTELGLKRFAVINLDDEYGAQFVKRLP--KDITVSAITQPADGRAQDIKITDSGYSFE 263
Query: 262 VSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVA-YKLGLSSEDVKKGLASFSGIKR 320
T L PLIG N+ N A++A + G+ ED+ L F G+
Sbjct: 264 GQQFTFETPA--GEGHLHTPLIGRFNVYNLLAALATLLHLGGIDLEDIVAALEKFRGVPG 321
Query: 321 RFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKIIAI 362
R LV V DY H P + L +R+ ++I +
Sbjct: 322 RMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHKDGRLIVV 363
>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 100 bits (251), Expect = 9e-22
Identities = 79/282 (28%), Positives = 118/282 (41%), Gaps = 27/282 (9%)
Query: 100 LAGLMRCRKS---ISVSGTHGKTTTTSLIAALL--EQGKFDPTVINGGIINSYG---TNA 151
LA R R S ++++G++GKTTT +IAA+L QG+ G N G T
Sbjct: 593 LATAWRARFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLL 652
Query: 152 RI-GTSEWIVVEAD-ESDGTFIRLPS----DIVVVTNIDPEHLDYYGDFNAIRAAFYKFI 205
R+ V E G L + + +VTN EH ++ A+ A + I
Sbjct: 653 RLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEII 712
Query: 206 DNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRK-YSGRSIFDVSV 264
+P G AVV D P R+++ +G P AD+ I K S
Sbjct: 713 AALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRC 772
Query: 265 QGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTL 324
Q ++ LPLIGEHN+ NA A+IA A G S + ++ GL F + R
Sbjct: 773 QVVTPAGSA---EVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQR 829
Query: 325 VGVWNDVHVFDD-YGHHPIEISSVLAAVRQIC-----PRKII 360
+ + DD Y +P S+ AA+ + PR ++
Sbjct: 830 RRLSCGTRIIDDTYNANP---DSMRAAIDVLAELPNGPRALV 868
Score = 89.4 bits (222), Expect = 2e-18
Identities = 75/312 (24%), Positives = 115/312 (36%), Gaps = 64/312 (20%)
Query: 110 ISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNAR-IGTS------------ 156
++V+GT+GKT+ L+A LL + I + R I S
Sbjct: 115 VAVTGTNGKTSCAQLLAQLLTRLGKPCGSIG---TLGARLDGRLIPGSLTTPDAIILHRI 171
Query: 157 ---------EWIVVEADES-------DGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAA 200
+ + +EA DG I + TN+ +HLDY+G A
Sbjct: 172 LARMRAAGADAVAMEASSHGLEQGRLDGLRI----AVAGFTNLTRDHLDYHGTMQDYEEA 227
Query: 201 FYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNR--KIITYGRHPQADIRYSNIRKYSGRS 258
+P G AV+ D P L R K+ ++ AD++ ++R +
Sbjct: 228 KAALFSKLPGLGAAVINADDPAAARL-LAALPRGLKVGYSPQNAGADVQARDLRATAHGQ 286
Query: 259 IFDVSV-QGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSG 317
+F ++ G+ L L+G N+SN A KLGL + + LA+ S
Sbjct: 287 VFTLATPDGSYQ--------LVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSP 338
Query: 318 IKRRFTLVGVW---NDVHVFDDYGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTL 374
+ R VG V DY H P ++ L A+R + Q R RL +
Sbjct: 339 VPGRMERVGPTAGAQGPLVVVDYAHTPDALAKALTALR--------PVAQA-RNGRLVCV 389
Query: 375 FDQFSSCFGDAD 386
F C GD D
Sbjct: 390 F----GCGGDRD 397
>gnl|CDD|179461 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 96.5 bits (241), Expect = 1e-20
Identities = 94/358 (26%), Positives = 150/358 (41%), Gaps = 57/358 (15%)
Query: 9 PIHFVGIGGIGMSGI--AEVLHNTGHQVQGSDVILGPNVQR----LHKQGIKVSIGHKVE 62
I V IG +G SGI A +L G +V SD P + L ++GI V +G +E
Sbjct: 1 AIAHV-IG-LGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLE 58
Query: 63 ------NIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEM-LAGLMRCRKSIS---V 112
+D +++V+S I D+ + RER I +I E+ LA R K I +
Sbjct: 59 LESFQPWLDQPDLVVVSPGIPWDHPTLVELRERGIEVI--GEIELA--WRALKHIPWVGI 114
Query: 113 SGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNA------RIGTSE---WIVVEA 163
+GT+GKTT T+L+A +L+ + G I G A R G ++ WIV E
Sbjct: 115 TGTNGKTTVTALLAHILQAAGLNAPA--CGNI---GYAACELALLRSGKAQKPDWIVAEL 169
Query: 164 D----ESDGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMD 219
ES L I + T P+HL+ +G A ++ ++ D
Sbjct: 170 SSYQIESSPE---LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNGD 223
Query: 220 HPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLS 279
P +R + T + + + + + +G V + + LS
Sbjct: 224 DPYLRQHRSSWPK-GYWTSTQGKASLL--------GQADGWILE-EGWVVERGEPLFPLS 273
Query: 280 -LPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
L + G HN+ N ++A A GLS+E + + L SF G+ R +G N + +D
Sbjct: 274 ALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEALRSFPGVPHRLERIGTINGIDFIND 331
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 93.4 bits (232), Expect = 1e-19
Identities = 83/332 (25%), Positives = 152/332 (45%), Gaps = 23/332 (6%)
Query: 13 VGIGGIGMSGIA--EVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENID----- 65
+G+ G+G +GI+ E L N DVI+ +++ ++ + + +
Sbjct: 9 IGVFGLGKTGISVYEELQNK------YDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQ 62
Query: 66 NAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKTTTTSLI 125
N + +VLS I + A+ NIPI ++L + K I+++GT+GK+TTT+LI
Sbjct: 63 NLDKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALI 122
Query: 126 AALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIR-LPSDIVVVTNID 184
+ +L D V G I A+ + + V+E ++ + I V+ NI
Sbjct: 123 SHILNSNGLDYPV--AGNIGVPALQAK-ASKDGYVLELSSFQLDLVKTFTAKIAVLLNIT 179
Query: 185 PEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQA 244
P+HLD + D + AA K D + +AV+ +D+ R + ++Q + I
Sbjct: 180 PDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVT 239
Query: 245 DIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLS 304
I + I S+ D + N D++ + L G+HN N AS AVA +G+
Sbjct: 240 KILENGI------SVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVE 293
Query: 305 SEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
+ + + ++SF + R +G N++ ++D
Sbjct: 294 PKKILESISSFQSLPHRMQYIGSINNISFYND 325
>gnl|CDD|162224 TIGR01143, murF,
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase. This family consists of the strictly bacterial
MurF gene of peptidoglycan biosynthesis. This enzyme is
almost always
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
few species, MurE adds lysine rather than
diaminopimelate. This enzyme acts on the product from
MurE activity, and so is also subfamily rather than
equivalog. Staphylococcus aureus is an example of
species in this MurF protein would differ.
Length = 417
Score = 93.1 bits (232), Expect = 1e-19
Identities = 74/271 (27%), Positives = 117/271 (43%), Gaps = 32/271 (11%)
Query: 108 KSISVSGTHGKTTTTSLIAALLEQ-GKFDPTVINGGIINS----------YGTNARIGTS 156
K I ++G+ GKTTT ++AA+L K G N+ +
Sbjct: 75 KVIGITGSSGKTTTKEMLAAILSHKYK---VFATPGNFNNEIGLPLTLLRAPGDHDYAVL 131
Query: 157 EWIVVEADESDGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVV 216
E E DI V+TNI P HL+ +G I A + + + G AV+
Sbjct: 132 EMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVI 191
Query: 217 CMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIR-KYSGRSIFDVSVQGNVTKDLTVI 275
D P R+ N+ I+++G D ++I G + F + G
Sbjct: 192 NADDPAFAKFAKRLPNKAILSFG-FEGGDFSAADISYSALGSTGFTLVAPGGEF------ 244
Query: 276 KDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFD 335
++SLPL+G HN+ NA A+ A+A +LG+ E++ +GLA +K RF + N + + D
Sbjct: 245 -EVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFEIQTK-NGLTLID 302
Query: 336 D-YGHHPIEISSVLAAVRQIC---PRKIIAI 362
D Y +P S+ AA+ P K I +
Sbjct: 303 DTYNANP---DSMRAAL-DALARFPGKKILV 329
>gnl|CDD|179291 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 91.8 bits (229), Expect = 4e-19
Identities = 79/259 (30%), Positives = 114/259 (44%), Gaps = 36/259 (13%)
Query: 85 AARERNIPII-----FRSEMLAGLMRCRKSISVSGTHGKTTTTSLIAALLEQGKFDPTVI 139
AR + +I F E A I+++GT+GK+TTT+LIA +L + D +
Sbjct: 88 LARAAGVEVIGDIELFCRERRAHAPDAP-FIAITGTNGKSTTTALIAHILREAGRD-VQM 145
Query: 140 NGGIINSYGTNA----RIGTSEWIVVEADESDGTFIRLPS---DIVVVTNIDPEHLDYYG 192
G I GT V+E S PS D+ V+ N+ P+HLD +G
Sbjct: 146 GGNI----GTAVLTLEPPPAGRVYVLEL--SSYQIDLAPSLDPDVGVLLNLTPDHLDRHG 199
Query: 193 DFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ--NRKIITY-GRHPQADIRYS 249
AA + AV+ +D R++ R++ R+++ P AD Y+
Sbjct: 200 TMEGYAAAKERLFAGQG-PDTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYA 258
Query: 250 NIRKYSGRSIFDVSVQGNVTK--DLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSED 307
+ G + D G + DL I SLP G HN NA A+ A A LGLS E+
Sbjct: 259 D-----GGKLVDAR-GGRQVEIADLRGIP--SLP--GAHNAQNAAAAYAAARALGLSPEE 308
Query: 308 VKKGLASFSGIKRRFTLVG 326
+ GLASF G+ R VG
Sbjct: 309 IAAGLASFPGLAHRMEQVG 327
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 86.8 bits (215), Expect = 1e-17
Identities = 101/375 (26%), Positives = 154/375 (41%), Gaps = 46/375 (12%)
Query: 110 ISVSGTHGKTTTTSLIAALLEQ-GK-FDPTVINGGIINSY------GTNARIG------- 154
+SV+GT+GKTTTT L+A +L+Q GK T +G I Y T
Sbjct: 482 VSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDP 541
Query: 155 TSEWIVVEADESDGTFIRL-----PSDIVVVTNIDPEHLDYYGDFNAI-RAAFYK--FID 206
T + V+E G +R D+ VVTNI +HL GD N I A K ++
Sbjct: 542 TVDAAVLETAR--GGILREGLAFDRCDVGVVTNIAGDHLGI-GDINTIEDLADVKRVVVE 598
Query: 207 NIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRK------YSGRSIF 260
+ G+AV+ D P V ++ A KI + P ++I Y I
Sbjct: 599 VVLPDGYAVLNADDPMVAAM-AEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYI- 656
Query: 261 DVSVQGNVTKDLTVIKDLSLPLIGE--HNISNACASIAVAYKLGLSSEDVKKGLASF--- 315
V +G + I + L + G I NA A++A A+ LG+ E ++ G+ +F
Sbjct: 657 -VIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAAWALGVPIELIRAGIRTFDAD 715
Query: 316 -SGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTL 374
+ RF L + HV DYGH+P I +V AA+R R+ I + R L
Sbjct: 716 AAQAPGRFNLFNL-GGAHVLVDYGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRDEDL 774
Query: 375 FDQFSSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVS-- 432
+Q G D +++ + P + L++ Q +A D D +
Sbjct: 775 VEQGELLGGAFDQIILKE--DDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIA 832
Query: 433 KILAIAEPGDFIIFF 447
L GD ++ F
Sbjct: 833 AALDDLRAGDLVVIF 847
>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 458
Score = 77.8 bits (192), Expect = 6e-15
Identities = 95/370 (25%), Positives = 160/370 (43%), Gaps = 51/370 (13%)
Query: 13 VGIGGIGMSGIA--EVLHNTGHQVQGSD----VILGPNVQRLHKQGIKVSIGHK-VENID 65
V + GIG+S I + L G +V D LG L + G+K+ +G ++ +D
Sbjct: 17 VAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD 76
Query: 66 NAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCR-KSISVSGTHGKTTTTSL 124
+++ + ++ D+ E + A+E I SEM + C K V+G+ GKTTTT+L
Sbjct: 77 GFDVIFKTPSMRIDSPELVKAKEEGAYIT--SEMEEFIKYCPAKVFGVTGSDGKTTTTTL 134
Query: 125 IAALLEQGKFDPTVINGGIINSYGTNAR-IGTSEWIVVEADESDGTFIRLPSDIVVVTNI 183
I +L++ + T + G I +N I + +V+E + + ++ VVTN+
Sbjct: 135 IYEMLKEEGYK-TWVGGNIGTPLFSNIEEIKEEDKVVLELSSFQLMTMDVSPEVAVVTNL 193
Query: 184 DPEHLDYYGDFNAIRAAFYKFID---NIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGR 240
P HLD + D ++ID NI Y E L+ N IT G
Sbjct: 194 SPNHLDVHKDME-------EYIDAKKNIFKY--------QSENDLLVLNKDNE--ITNGM 236
Query: 241 HPQADIRYSNIRKYSGRSIF--DVSVQGN--VTKDLTVIKDLSLPLIGEHNISNACASIA 296
+A ++ K+S + ++ + V K + L G HN+ N A+
Sbjct: 237 EKEAK---GDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFC 293
Query: 297 VAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISS----VLAAVR 352
A +S E +KK +FSG++ R V N V ++D I+S LA ++
Sbjct: 294 -AVNDDVSIESMKKVATTFSGVEHRCEFVREINGVKYYND------SIASSPTRTLAGLK 346
Query: 353 QICPRKIIAI 362
+ +I I
Sbjct: 347 AF-EKPVILI 355
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 445
Score = 74.9 bits (184), Expect = 4e-14
Identities = 85/340 (25%), Positives = 136/340 (40%), Gaps = 41/340 (12%)
Query: 13 VGIGGIGMSGIAEVLHNTGHQVQGSDVILGPNVQRLHK--QGIKVSIGHKVENIDN-AEI 69
G+GG G+S IA + N + V ++ K G+ G + +DN +I
Sbjct: 11 AGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDI 70
Query: 70 LVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCR--KSISVSGTHGKTTTTSLIAA 127
L LS I + + A ++ ++ E+LA ++ R K I+++G++GKTT TSL+
Sbjct: 71 LALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGY 130
Query: 128 LLEQGKFDPTVINGGIINSYGTN------ARIGTSE--WIVVEADESDGTFIRLPSDIVV 179
L + D TVI G I GT R G W++ + L
Sbjct: 131 LCIKCGLD-TVIAGNI----GTPVLEAELQREGKKADVWVLELSSFQLENTESLRPTAAT 185
Query: 180 VTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYG 239
V NI +HLD Y D K G V+ D R++ R R++ +
Sbjct: 186 VLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQVLNADDAFCRAM-KRAG-REVKWFS 240
Query: 240 RHPQADI---RYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIA 296
+AD R + K + +PL G HN +N A++A
Sbjct: 241 LEHEADFWLERETGRLKQGNEDLIATQ---------------DIPLQGLHNAANVMAAVA 285
Query: 297 VAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
+ +GL E + + + +F G+ R +G N V DD
Sbjct: 286 LCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDD 325
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 480
Score = 74.7 bits (184), Expect = 5e-14
Identities = 80/364 (21%), Positives = 132/364 (36%), Gaps = 72/364 (19%)
Query: 13 VGIGGIGMSGI--AEVLHNTGHQV----QGSDVILGPNVQRLHKQGIKVSIGHKVENIDN 66
V + G+G+SG A+ L G +V G D L G V +G ++
Sbjct: 19 VVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPED 78
Query: 67 AEILVLSTAIDKDNVECIAARERNIPIIFRSEM---LAGLMRCRKSISVSGTHGKTTTTS 123
+++V S D AA + IP+ E+ L R ++V+GT+GKTTT
Sbjct: 79 TDLVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQ 138
Query: 124 LIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVVT-- 181
++A++L + IGT V++A + D++ V
Sbjct: 139 MLASMLRAAGLRAAAV-----------GNIGTP---VLDAVRDPEGY-----DVLAVELS 179
Query: 182 ------------------NIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEV 223
N+ P+HLD++G A AA + + V + P
Sbjct: 180 SFQLHWSPSVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEGT--TVACVYNVADPAT 237
Query: 224 RSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFD------VSVQGNVTK--DL 272
L+ ++ + I + S + D V+ T +L
Sbjct: 238 EDLVEEADVVEGARAIGFT---------LGTPGPSQLGVVDGILVDRAFVEDRQTSALEL 288
Query: 273 TVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVH 332
++DL HNI+NA A+ A+A G+ V+ GL +F R V + V
Sbjct: 289 ATLEDLRPA--APHNIANALAAAALARSFGVPPAAVRDGLRAFRPDAHRIEHVADADGVT 346
Query: 333 VFDD 336
DD
Sbjct: 347 WVDD 350
>gnl|CDD|179359 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 498
Score = 73.5 bits (181), Expect = 1e-13
Identities = 78/286 (27%), Positives = 114/286 (39%), Gaps = 41/286 (14%)
Query: 85 AARERNIPII----FRSEMLAGLMRCR---KSISVSGTHGKTTTTSLIAALLEQGKFDPT 137
AARER IP+ ++ LA L K ++++GT+GKTTTT+L L E+
Sbjct: 92 AARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151
Query: 138 VINGGIINSYGTNA---RIGTSEWIVVEADESDG----TFIRLPSDIVVVTNIDPEHLDY 190
V G I+ + I V E T L D V NI +HLD+
Sbjct: 152 V--AGNISPAALDKLMEAIDAGALPDVWVLELSSFQLETTHTLAPDAATVLNITQDHLDW 209
Query: 191 YGDFNAIRAAFYK-FIDNIPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRH-PQADIRY 248
+G A AA + F V+ D V ++ +T+G P AD Y
Sbjct: 210 HGSMAAYAAAKARIFGPR----TVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDY 265
Query: 249 SNIRKYSG---------RSIFDVSVQGNVTKDLTVIKDLS---------LPLIGEHNISN 290
+R +G R D + KD D+ L + G HN +N
Sbjct: 266 GLLRD-NGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAAN 324
Query: 291 ACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
A A++A+A +GL + + GL + G R LV + V +DD
Sbjct: 325 ALAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDD 370
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 72.1 bits (178), Expect = 3e-13
Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 110 ISVSGTHGKTTTTSLIAALLEQ-GKF------DPTVINGGII----NSYGTNARI----G 154
++V+GT+GKTTTT LIA +L+ GK D I+G +I + +AR
Sbjct: 483 VAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNP 542
Query: 155 TSEWIVVEADESDGTFIR--LP---SDIVVVTNIDPEHLDYYGDFNAIRAAFYK--FIDN 207
E V+E G +R L D+ VVTNI +HL G A K ++
Sbjct: 543 DVEAAVLETAR--GGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEA 600
Query: 208 IPFYGFAVVCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIF---D--V 262
+ G+AV+ D P V ++ R + K+I + P + + + GR+++ D V
Sbjct: 601 VKPDGYAVLNADDPMVAAMAERCKG-KVIFFSMDPDNPVIAEHRAQ-GGRAVYVEGDYIV 658
Query: 263 SVQGNVTKDLTVIKDLSLPLIG--EHNISNACASIAVAYKLGLSSEDVKKGLASF 315
+G + + D+ L L G NI NA A+IA A+ LG+ E ++ GL +F
Sbjct: 659 LAEGGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWALGIDIELIRAGLRTF 713
>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 71.1 bits (175), Expect = 6e-13
Identities = 78/347 (22%), Positives = 138/347 (39%), Gaps = 58/347 (16%)
Query: 13 VGIGGIGMSGIAEVLHNTGHQVQGSDVILGP----NVQRLHKQGIKVSIGH-KVENIDNA 67
VG+G G+S + L G D P + R +++ G E + A
Sbjct: 12 VGLGKTGLS-VVRFLARQGIPFAVMDSREQPPGLDTLAR-EFPDVELRCGGFDCELLVQA 69
Query: 68 EILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKS--ISVSGTHGKTTTTSLI 125
+++S + D AA I +I E+ A R K+ I+++G++GK+T T+L+
Sbjct: 70 SEIIISPGLALDTPALRAAAAMGIEVIGDIELFA---REAKAPVIAITGSNGKSTVTTLV 126
Query: 126 AALLEQ-GKFDPTVINGGIINSYGTNARIGTSEWIVVE--ADESDGTFIRLPS------- 175
+ + GK V GG IGT ++ +D+ + + L S
Sbjct: 127 GEMAKAAGK---RVAVGG---------NIGTP---ALDLLSDDPELYVLELSSFQLETTH 171
Query: 176 --DIVVVT--NIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQ 231
+ V T NI +H+D Y D A A ++ V D R L+
Sbjct: 172 SLNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRGA---KQVVFNRDDALTRPLVPD-- 226
Query: 232 NRKIITYGRH-PQADIRYSNIRKYSGRSIFDVSVQGNVTKDLT-VIKDLSLPLIGEHNIS 289
N+ +++G + P D + + + + ++ L L G HN++
Sbjct: 227 NQPCLSFGLNAPDFD----------EWGLREGDGETYLAHGFERLMPVRELKLRGSHNLA 276
Query: 290 NACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
NA A++A+ GL E + + L +F+G+ R V V ++D
Sbjct: 277 NALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAGVDYYND 323
>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 468
Score = 70.6 bits (173), Expect = 9e-13
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 57/305 (18%)
Query: 55 VSIGHKVENIDNAEILVLSTAIDKDNVECIAARERNIPII-----FRSEMLAGLMRCRKS 109
V + + +++V S I E +AA R P I + +E A +
Sbjct: 58 VETEASAQRLAAFDVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGT 117
Query: 110 ISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGT-----NARIGTSEWIVVEAD 164
+ V+GT GK+TTT+L+A LL T + G I G A E+ +E
Sbjct: 118 VCVTGTKGKSTTTALLAHLLRAAG-HRTALVGNI----GVPLLEVLAPQPAPEYWAIELS 172
Query: 165 E---SDGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHP 221
D ++ VV N+ PEHLD++G A +Y+ D + ++V P
Sbjct: 173 SYQTGDVARSGARPELAVVLNLFPEHLDWHGG----EARYYR--DKL-----SLVTEGRP 221
Query: 222 EVRSLIARIQNRKIITYGRHPQADIRYSNIRK---------YSG-RSIFDVSVQGNVTKD 271
+ L A + ++ + P +++ + N Y G +++FD ++
Sbjct: 222 RIALLNA--ADPRLAAL-QLPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTAL------- 271
Query: 272 LTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDV 331
+PL G HN N CA +A LGL + + A F + R +G + +
Sbjct: 272 --------VPLPGRHNRGNLCAVLAALEALGLDAVALAPAAAGFRPLPNRLQELGSRDGI 323
Query: 332 HVFDD 336
+D
Sbjct: 324 TYVND 328
>gnl|CDD|178896 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 473
Score = 64.0 bits (156), Expect = 7e-11
Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 52/349 (14%)
Query: 13 VGIGGIGMSG--IAEVLHNTGHQVQGSDVILGPNVQRLHK-----QGIKVSIGHKVENID 65
V + G G+SG IA +L G V V+ N HK +S + +D
Sbjct: 18 VLVAGAGVSGRGIAAMLSELGCDV----VVADDNETARHKLIEVTGVADISTAEASDQLD 73
Query: 66 NAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRC------RKSISVSGTHGKT 119
+ ++V S D+ + A+ + + +I E+ L + R ++V+GT+GKT
Sbjct: 74 SFSLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKT 133
Query: 120 TTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADESDGTFI-------- 171
TTT+++AA++++G F + IG + A +
Sbjct: 134 TTTAMLAAMMQEGGFAAQAV-----------GNIGVPVSAALVAQPRIDVLVAELSSFQL 182
Query: 172 ----RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLI 227
L D+ VV N+ +H+D++G A K + AV+ D V L
Sbjct: 183 HWSPTLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLRG----PVAVIGADDEYVVQLT 238
Query: 228 ARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHN 287
+ +I + A +R G + + Q V I S G
Sbjct: 239 SAADLSGLIGFTMGEPAA-GQVGVR--DGELVDNAFGQNVVLASAEGI---SPA--GPAG 290
Query: 288 ISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
+ +A A+ AVA G++ E + + L+SF R +V V D+
Sbjct: 291 VLDALAAAAVARSQGVAPEAIARALSSFEVAGHRGQVVAEHGGVTWIDN 339
>gnl|CDD|184459 PRK14022, PRK14022,
UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase;
Provisional.
Length = 481
Score = 54.7 bits (132), Expect = 6e-08
Identities = 65/293 (22%), Positives = 111/293 (37%), Gaps = 70/293 (23%)
Query: 108 KSISVSGTHGKTTTTSLIAALLEQGKFDPTVI---NGGIINSYGTNARIGTSEWI----- 159
K ++ +GT GKTT +L+Q P ++ N + + + T E +
Sbjct: 111 KLLAFTGTKGKTTAAYFAYHILKQLH-KPAMLSTMNTTLDGETFFKSALTTPESLDLFKM 169
Query: 160 VVEADESDGTFI---------------RLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKF 204
+ EA ++ T + L D+ V NI P+H+
Sbjct: 170 MAEAVDNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNITPDHIG--------------P 215
Query: 205 IDNIPF--YGF----------AVVC---MDHPEVRSLIARIQNRKIITYGRHPQADIRYS 249
I++ F Y + AVV MDH L+ ++ ++ YG + I S
Sbjct: 216 IEHPTFEDYFYHKRLLMENSKAVVVNSDMDHFSE--LLEQVTPQEHDFYGIDSENQIMAS 273
Query: 250 NIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVK 309
N F G + + LIG+ N NA A+ +LG S ED++
Sbjct: 274 NA--------FSFEATGKL------AGTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQ 319
Query: 310 KGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEISSVLAAVRQICPRKIIAI 362
KG+A + R ++ N VF DY H+ ++ ++ V + K+I +
Sbjct: 320 KGIAQTP-VPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQKGKLILL 371
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 50.2 bits (120), Expect = 1e-06
Identities = 73/367 (19%), Positives = 143/367 (38%), Gaps = 56/367 (15%)
Query: 5 QGMGPIHFVGIGGIGMSGIAEVLHNTGHQVQGS-DVI----LGPNVQRLHKQGIKVSIGH 59
I V + G+G++G++ V H +Q Q + VI P ++L + S G
Sbjct: 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGW 61
Query: 60 KVENIDNAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKSISVSGTHGKT 119
+E + A+++V + I E IP++ E+ A + + I+++G++GK+
Sbjct: 62 NLEWLLEADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVD-KPVIAITGSNGKS 120
Query: 120 TTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEAD-----------ESDG 168
T T L + + G+ + G N + + + +A+ E+
Sbjct: 121 TVTDLTGVMAKAA---------GVKVAVGGNIGVPALDLLEQDAELYVLELSSFQLETTS 171
Query: 169 TFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMD----HPEVR 224
+ L N+ +H+D Y R A + D+ AVV D +P+
Sbjct: 172 S---LKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAEL---AVVNRDDKQTYPDHA 225
Query: 225 SLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIG 284
L +++T+G Q + + + D V+ L L+G
Sbjct: 226 EL-------QLVTFGFDQQD---FGLAQHQGREWLAD--------NGQPVLASAELKLVG 267
Query: 285 EHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDDYGHHPIEI 344
HN++N +A+ G+ L S++G+ R +V + + +D +
Sbjct: 268 RHNVANVLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADNHGIKWVND--SKATNV 325
Query: 345 SSVLAAV 351
+S LAA+
Sbjct: 326 ASTLAAL 332
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 49.6 bits (119), Expect = 2e-06
Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 55/287 (19%)
Query: 66 NAEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRCRKS----ISVSGTHGKTTT 121
A+++V S I + AA + I I+ E+ CR++ ++++G++GK+T
Sbjct: 65 AADLIVASPGIALAHPSLSAAADAGIEIVGDIELF-----CREAQAPIVAITGSNGKSTV 119
Query: 122 TSLIAALLEQGKFDPTVINGGIINSYGTNARIG---------TSEWIVVEAD--ESDGTF 170
T+L+ + + G G N IG E V+E + + T
Sbjct: 120 TTLVGEMAKAA---------GWKVGVGGN--IGLPALSLLDQECELYVLELSSFQLETTS 168
Query: 171 IRLPSDIVVVTNIDPEHLD-YYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIAR 229
L + + N+ +H+D Y RAA + +N VV D ++ R
Sbjct: 169 -SLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKV---CVVNADDAL--TMPIR 222
Query: 230 IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNIS 289
+++ +++G + D + + G + V K V+ + L G+HN +
Sbjct: 223 GADKRCVSFGVN-MGDYH---LNRQQGETWLRV-------KGEKVLNTKEMKLSGQHNYT 271
Query: 290 NACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLV----GV-W-ND 330
NA A++A+A +G+ K L +F+G+ RF LV GV W ND
Sbjct: 272 NALAALALADAVGIPRASSLKALTTFTGLPHRFQLVLEHNGVRWIND 318
>gnl|CDD|184501 PRK14093, PRK14093,
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase;
Provisional.
Length = 479
Score = 49.4 bits (118), Expect = 2e-06
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 37/248 (14%)
Query: 83 CIAARER------NIPIIFRSEMLAGLM------RCR---KSISVSGTHGKTTTT-SLIA 126
+ R + + P++ ++LA L R R K I+V+G+ GKT+T +L
Sbjct: 69 AVVERAQRDKFAADAPLLVVDDVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRG 128
Query: 127 ALLEQGKFDPTVINGGIINSYGT---------NARIGTSEWIVVEADESDGTFIRLPSDI 177
L QG+ +V N +G +AR E + A E + + +
Sbjct: 129 VLGAQGETHASV--ASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEIEPLVKMVRPHV 186
Query: 178 VVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARIQNR---K 234
++T ++P HL+++ AI A + + G AV+ D+P+ L A + +
Sbjct: 187 AIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIAR 246
Query: 235 IITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACAS 294
I+++G +AD R ++ ++ S + G+ V L +P G H N+ A
Sbjct: 247 IVSFGADEKADARLLDVALHADCSAVHADILGH-----DVTYKLGMP--GRHIAMNSLAV 299
Query: 295 IAVAYKLG 302
+A A G
Sbjct: 300 LAAAELAG 307
>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 488
Score = 47.0 bits (112), Expect = 1e-05
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 27/237 (11%)
Query: 107 RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGTNARIGTSEWIVVEADES 166
R+ + V+GT+GKTTTTS++ A+L +V+ G I + + +E + VE S
Sbjct: 117 RRWLVVTGTNGKTTTTSMLHAMLIAAGR-RSVLCGNIGSPV-LDVLDEPAELLAVEL--S 172
Query: 167 DGTFIRLPS---DIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMDHPEV 223
PS + V NI +HLD++G A AA + + AVV +D
Sbjct: 173 SFQLHWAPSLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALTG----RVAVVGLDDSRA 228
Query: 224 RSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVS----VQGNVTKDLTVIKDLS 279
+L+ A +R V V DL + S
Sbjct: 229 AALLDT------------APAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVAS 276
Query: 280 LPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336
+P+ G + +A A+ A+A +G+ + + LASF + R +V V + + DD
Sbjct: 277 IPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVADGITYVDD 333
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Reviewed.
Length = 453
Score = 44.3 bits (105), Expect = 8e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 277 DLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRR 321
D+ LPL G HNI+NA A+ A+A +G + + VK GLA+ + R
Sbjct: 273 DVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLANLKAVPGR 317
>gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. A mutation study of the FolC gene of E. coli
suggests that both activitities belong to the same
active site. Because some examples are monofunctional
(and these cannot be separated phylogenetically), the
model is treated as subfamily, not equivalog.
Length = 397
Score = 43.8 bits (104), Expect = 9e-05
Identities = 61/316 (19%), Positives = 113/316 (35%), Gaps = 86/316 (27%)
Query: 108 KSISVSGTHGKTTTTSLIAALLEQ-----GKF---------DPTVINGGIIN-SYGTNA- 151
I V+GT+GK +T + + ++L G F + ING I+ A
Sbjct: 19 PVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAF 78
Query: 152 -----------------RIGT-----------SEWIVVEAD---ESDGTFIRLPSDIVVV 180
+ T + V+E D T + + + V+
Sbjct: 79 EQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNV-IEPLVSVI 137
Query: 181 TNIDPEHLDYYGDFNAIRA-AFYK---FIDNIPFYGFAVVCMDHPEVRSLIARIQNRK-- 234
T+I +H + G + + A+ K + +P V PE +++ + K
Sbjct: 138 TSIGLDHTEILG--DTLEEIAWEKAGIIKEGVP----IVTGPQEPEALNVLKKKAQEKGA 191
Query: 235 -IITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISNACA 293
+ GR D YS + + ++ L+L L+G+H NA
Sbjct: 192 PLFVVGR----DFNYSETD----------ENYLSFSGANLFLEPLALSLLGDHQAENAAL 237
Query: 294 SIAVAYKLG-----LSSEDVKKGLASFS--GIKRRFTLVGVWNDVHVFDDYGHHPIEISS 346
++A LG LS E ++KGLA+ G R ++ N ++ D H+P +
Sbjct: 238 ALAALEVLGKQRPKLSEEAIRKGLANTIWPG---RLEILSEDN-PNILLDGAHNPHSAEA 293
Query: 347 VLAAVRQICPRKIIAI 362
+ ++ + I +
Sbjct: 294 LAEWFKKRFNGRPIIL 309
>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 418
Score = 43.6 bits (103), Expect = 1e-04
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 17 GIGMSG--IAEVLHNTGHQVQGSDVILGP--NVQRLHKQGIKVSIGHKVENIDNAEILVL 72
G+G++G IA L G V G D L + +H++ ++ + E +D ++V
Sbjct: 10 GLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLE-NAEEFPEQVD---LVVR 65
Query: 73 STAIDKDNVECIAARERNIPII------FRSEMLAGLMRCRKSISVSGTHGKTTTTSLIA 126
S I K++ AA +IP++ F++ S+ ++G+ GKTTT +
Sbjct: 66 SPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTR----YPSLGITGSTGKTTTILFLE 121
Query: 127 ALL 129
LL
Sbjct: 122 HLL 124
>gnl|CDD|179652 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 401
Score = 43.0 bits (102), Expect = 1e-04
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 28/101 (27%)
Query: 108 KSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYGT-------NARIGTSEWIV 160
SI +SGT+GKTTTT + LLE F V G I GT NA+I W++
Sbjct: 90 FSIWISGTNGKTTTTQMTTHLLE--DFG-AVSGGNI----GTPLAELDKNAKI----WVL 138
Query: 161 VEADESDG-----TFIRLPSDIVVVTNIDPEHLDYYGDFNA 196
E+ T P +I ++ I P+HL ++G F
Sbjct: 139 ----ETSSFTLHYTNKAKP-NIYLLLPITPDHLSWHGSFEN 174
>gnl|CDD|182167 PRK09956, PRK09956, hypothetical protein; Provisional.
Length = 308
Score = 32.0 bits (72), Expect = 0.34
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 23 IAEVLHNTGHQVQGSDVILGPNVQRLHKQGIKVSIGHKVENIDNAEILVLSTAIDKD 79
IAE L GHQ+ + L + +H+Q IK+++ + D ++L + + D
Sbjct: 246 IAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKIALRMLEQGFDRDQVLAATQLSEAD 302
>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
Length = 263
Score = 31.0 bits (71), Expect = 0.68
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 142 GIINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAF 201
++ G I + E + + + T + +DP LD G +NAI
Sbjct: 56 EVLKPLGRCVNIISEELGEIVGNGPEYTVV-----------LDP--LD--GTYNAIN--- 97
Query: 202 YKFIDNIPFYGFAV 215
IPFY ++
Sbjct: 98 -----GIPFYAISI 106
>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional.
Length = 317
Score = 30.8 bits (70), Expect = 0.70
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 45 VQRLHKQGIKVSIGHKVENIDNAEI-------LVLSTAIDKDNVECIAARERNIPI 93
+RL +G +V+I +KV +D A + L+L A +NV+ AARER I +
Sbjct: 40 AERL--RGAQVAISNKVA-LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITV 92
>gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 30.8 bits (70), Expect = 0.80
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 1 MLNPQGMGPIHFVGIGGIGMSGIAEVLHNTGHQV---QGSDVILGPN---------VQRL 48
+L+ + I G G IGM A VL N G V + D L PN ++
Sbjct: 166 ILSRELPKSIVIAGAGAIGME-FAYVLKNYGVDVTIVEFLDRAL-PNEDAEVSKEIAKQY 223
Query: 49 HKQGIKVSIGHKVENIDN 66
K G+K+ G KVE+ID+
Sbjct: 224 KKLGVKILTGTKVESIDD 241
>gnl|CDD|183386 PRK11930, PRK11930, putative bifunctional
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase/alanine racemase; Provisional.
Length = 822
Score = 30.7 bits (70), Expect = 0.89
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 176 DIVVVTNIDPEHLDYYGDFNAI---RAAFYKFIDNIPFYGFAVVCMDHPEVRSLIARI-Q 231
I ++TNI H + + + +K D I + D+ + S I +
Sbjct: 184 TIGILTNIGGAHQENFRSIKQKIMEKLKLFKDCDVI------IYNGDNELISSCITKSNL 237
Query: 232 NRKIITYGR-HPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIKDLSLPLIGEHNISN 290
K+I++ R P+A + + K ++ + +G +D +P I + +I N
Sbjct: 238 TLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKG---EDFH----FEIPFIDDASIEN 290
Query: 291 ACASIAVAYKLGLSSEDVKKGLA 313
IAV LG S++ +++ +A
Sbjct: 291 LIHCIAVLLYLGYSADQIQERMA 313
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 461
Score = 30.3 bits (69), Expect = 1.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 13 VGIGGIGMSGIAEVLHNTGHQV---QGSDVILGPN-------VQR-LHKQGIKVSIGHKV 61
+G G IG+ A + + G +V + D IL V + L K+G+K+ KV
Sbjct: 176 IGGGVIGIE-FASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKV 234
Query: 62 ENI 64
+
Sbjct: 235 TAV 237
>gnl|CDD|184158 PRK13577, PRK13577, diaminopimelate epimerase; Provisional.
Length = 281
Score = 30.0 bits (68), Expect = 1.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 289 SNACASIAVAYKLGLSSEDVK 309
S++CA+ AVA++LGL +
Sbjct: 220 SSSCAAAAVAHRLGLCDSSIT 240
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 29.7 bits (66), Expect = 1.7
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 21 SGIAEVLHNTGHQVQG--------SDVILGPNVQRLHKQGIKVSIGH-KVENI----DNA 67
+GI E++ +TG Q++G S+++ P Q L + V+I H + +++ A
Sbjct: 142 AGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEA 201
Query: 68 EILVLSTAIDK 78
+ILV++T + K
Sbjct: 202 DILVVATGLAK 212
>gnl|CDD|180465 PRK06201, PRK06201, hypothetical protein; Validated.
Length = 221
Score = 28.8 bits (65), Expect = 3.1
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 428 DHL-VSKILAIAEPGDFIIFFGAGNITQWAASLIGEL 463
D+L + + L +A PGD I+ G G++T +L+GE+
Sbjct: 66 DNLMIHRALDLARPGDVIVVDGGGDLTN---ALVGEI 99
>gnl|CDD|180018 PRK05327, rpsD, 30S ribosomal protein S4; Validated.
Length = 203
Score = 28.2 bits (64), Expect = 4.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 143 IINSYGTNARIGTSEWIVVEADESDGTFIRLP--SDIVVVTNIDPEHL--DYY 191
I + R G +W+ V+A++ +GTF RLP +I V N E L + Y
Sbjct: 152 IKEALELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPIN---EQLIVELY 201
>gnl|CDD|184119 PRK13532, PRK13532, nitrate reductase catalytic subunit;
Provisional.
Length = 830
Score = 28.3 bits (64), Expect = 4.6
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 4/21 (19%)
Query: 168 GTFI-RLPSDIVVVTNIDPEH 187
GTF RLP+D+ VVTN P+H
Sbjct: 423 GTFSHRLPADM-VVTN--PKH 440
>gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 28.0 bits (63), Expect = 4.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 420 QAYYMDSFDHL--VSKILAIAE--------PGDFIIFFGAGNITQWAASLI 460
QA Y+D + HL + +IL++ GD ++ AG WAA++I
Sbjct: 283 QAIYLDEYGHLGQLDQILSLHLALEQGKLKDGDLVVLVSAGTGYTWAATVI 333
>gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family. This model
describes the capsular exopolysaccharide proteins in
bacteria. The exopolysaccharide gene cluster consists of
several genes which encode a number of proteins which
regulate the exoploysaccharide biosynthesis(EPS).
Atleast 13 genes espA to espM in streptococcus species
seem to direct the EPS proteins and all of which share
high homology. Functional roles were characterized by
gene disruption experiments which resulted in
exopolysaccharide-deficient phenotypes.
Length = 204
Score = 28.2 bits (63), Expect = 4.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 111 SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSY------GTNARIGTSEWIVVEAD 164
SV GK+TT++ IA Q + +I+G + NS N G + ++ D
Sbjct: 24 SVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTD 83
Query: 165 ESDG 168
SD
Sbjct: 84 LSDA 87
>gnl|CDD|162690 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. S-methyltransferase (MetE, EC
2.1.1.14, the cobalamin-independent methionine synthase)
and betaine-homocysteine methyltransferase.
Length = 1178
Score = 28.2 bits (63), Expect = 4.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 338 GHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTL-FDQFSS 380
G P I ++ AV+ I PR+ +++P R S L + Q S+
Sbjct: 299 GTTPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSN 342
>gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 27.6 bits (62), Expect = 6.4
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query: 52 GIKVSIGHKVENIDNAEIL-----VLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRC 106
G KV G VE I + VLS D +E I ++ + + I+F
Sbjct: 97 GKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVF----------- 145
Query: 107 RKSISVSGTHGKTTTTSLIAALLEQGKFDPTVING 141
+ V+GT GKTTT + +A L++ F + G
Sbjct: 146 ---VGVNGT-GKTTTIAKLAYYLKKNGFSVVIAAG 176
>gnl|CDD|163531 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 27.7 bits (62), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 99 MLAGLMRCRKSISVSGTHGKTTTTSLIAALL 129
+L ++ R + +SG G TT L++ALL
Sbjct: 170 LLRAIVAARLAFLISGGTGSGKTT-LLSALL 199
>gnl|CDD|131394 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 519
Score = 27.5 bits (61), Expect = 7.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 64 IDNAEILVLSTAIDKDNVECIAARER 89
I+NA+IL+ +T +D D V+ +R R
Sbjct: 223 IENAKILIANTPMDTDKVKVFGSRVR 248
>gnl|CDD|130089 TIGR01017, rpsD_bact, ribosomal protein S4, bacterial/organelle
type. This model finds organelle (chloroplast and
mitochondrial) ribosomal protein S4 as well as bacterial
ribosomal protein S4.
Length = 200
Score = 27.3 bits (61), Expect = 8.7
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 143 IINSYGTNARIGTSEWIVVEADESDGTFIRLPSDIVVVTNIDPEHL--DYY 191
+ + TN + W+ V+ +G +R+P + I+ E L +YY
Sbjct: 149 VKENLETNGQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPIN-ESLVVEYY 198
>gnl|CDD|116359 pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 53. This
domain belongs to family 53 of the glycosyl hydrolase
classification. These enzymes are enzymes are endo-1,4-
beta-galactanases (EC:3.2.1.89). The structure of this
domain is known and has a TIM barrel fold.
Length = 332
Score = 27.3 bits (61), Expect = 9.4
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 344 ISSVLAAVRQICPRKIIAIH--QPHRYSRLSTLFDQFSSCFGDADIVLIS--PVYSA 396
++S AV+ + P + IH FD + D D++ +S P +S
Sbjct: 156 LNSGYWAVKDVNPTIKVMIHLDNGEDNGTYRWWFDNLLAAGVDFDVIGVSYYPFWSG 212
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 27.1 bits (60), Expect = 9.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 373 TLFDQFSSCFGDADIVLISPVYSAGEKEIPGFSS 406
TL D FS+ +AD + S G E+PGF S
Sbjct: 338 TLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPS 371
>gnl|CDD|183827 PRK12906, secA, preprotein translocase subunit SecA; Reviewed.
Length = 796
Score = 27.0 bits (60), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 36 GSDVILGPNVQRLHKQGIKVSIG---HKVENIDN 66
G+D+ LGP V+ L G+ V IG H+ IDN
Sbjct: 501 GTDIKLGPGVKEL--GGLAV-IGTERHESRRIDN 531
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,035,327
Number of extensions: 539879
Number of successful extensions: 1329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1270
Number of HSP's successfully gapped: 93
Length of query: 474
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 377
Effective length of database: 3,898,497
Effective search space: 1469733369
Effective search space used: 1469733369
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)